Non-Coding RNA Search

Ss1.1-Pig4-TMW8059H18.3

Sequence:


               
               CACATCTGGAAGATCCCTACTCCATTTGCAAGTCATGCTTTTCACCCTCTGGATGGCTTC
CTTCAGAGTCTCCCTTACCACATATACCCTTTCGTTTTTCCCCTACACAAGGTAGTTTAT
TTAGGTTTGTACATTTTGGTCAATATCTGGACAATTTCCATTCATGACGGTGACTTCCGT
GTTCCCCAGAGCTTAAGGCCATTTATTAATGGCTCAGCCCATCATACAGACCACCATATG
CTCTTTGACTATAACTATGGACAGTACTTCACGTTGTGGGACAGAATTGGAGGCTCATTC
AAAAACCCCTCCTCCTTTGAAGGGAATGGACCACTTGATTATGTGAAGAAGATGACAGAA
GAAAAGTTCAGCAACCATGCAGGAAATGGTTGTAAAAATGAAAAATTATTCAATGGCGAG
GGCAAAAAGGCTGAGTAGATTATTGCCGAATTACTGAATATTTTTAATCAAGAGAAATAA
TCTACATATGTACAGCCAAGAGGCCTAGCACGTGAACAGTATCATTTGAAAATCAGAATG
GTGGGTCCTGCTGAGGAATGATCATGCTGGTAGGTCAAAAGAACATGCTGTGAACACCAA
GGGACTAATGGTGTCTTTCTAGCCAGCAGATCTGCAATTTGTATAGCCTCAACAACAGTT
TTTTAAAAGATAGAGGATAAGTTTTTAAGGGGACCAGGTAATGTCCTTTTGCCTTAATTC
ATCATTATTCATTAAGTAAAATTCATTGTGCTTAATGATATCATGACTAAACACCGTAAC
AACAAAATACTAATGTAAAGATGGTTCCTTGTTTCAGGAATGAGTTCAGTACATAATAAC
AACTACTTGTAGTATGTTGTTCAAGTGGAAACATCAGTATGGGGAAAAAATTGTGATATA
ATAGCAGCTGAGTGACGTGATAGCAGGTGTAATGAGATTATCGTCTTCCTACACACAGAG
AACTTAATCTCTGGGGTCATTGTCAAATATTATATTTTACTGATGAACAAATAAATTGGG
AATTTTAAAAAATATTAATATTACCATGATTTAATCCAGAACTGGGATTATTTAAAGATT
TTGGTAATTATTATTTTAAACCATTATTTAATAAGTATAAAATTATGCAACTCTGAATAT
ATGTAGAAAGGGAAATTTGATACCCAAATAATACATTTGACTCTACTGGGGTTTAGGGGT
CTTTTTGGCCAGGCCCAAGGCATGTCAGAGTTCCCAGGCCAGGGATGAACCCATGCCACA
ACAGCGACCTGAGCCACAGCAGTAACACCACCAGATCCTTAATCTGCTGTACCACAGGGG
AATTCCTAATGGTCCTGGTTTTTTAGTTTAACTGATGCACTGCACTTTTGATGTCTCAAA
GTTACAATCCTGTGATTTTCTGTGAAAGGAAATTGTTGTCAAATATTTAGGCCTATCGCT
TAAGATTAGCTTTAAAATCTTATTTTCTCTCTTTCTTCACTTTTACCCACTTCTTCTGCA
AAATTATTTAACAAATATTTTCATAGAGAAATGTCATGTGTTGTAACATAAACATGAAAA
CATGGTTTGCAAAGGCATTCTGTAAAGTATGTAAAATAAAAGTTGATTATGACTGTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAACAGCACAGAGTCTTCTTTGGACAAATTTTATGTCA
GCCTGAAACCACAGAAATGATGTAGATTGTCAAAACTTTTAGCATCCCTCCAAATGCTTG
ATGTCAAAGGGAGAAAGAGAGAAGTCAGTATCACTTTCTTTGTATATTTCACATCTTTTA
TTAGATTTGAGTGTCATAAAATTTAATGCTTGGGATCCAAAAGAAAAAAAAATTATTTTT
TCTGTTGGAGTTACTGTTCCAGTGTTACTTTACTTAAACATACCAGTATACCAGTTAGTG
TTTGTAATGGGTCGGTGCAGCTGTGTGGTTTTCACTAATCCCCACCGCCAACCCCCTCCC
TGCCCCTGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATCTGGAAGATCCCTACTCCATTTGCAAGTCATGCTTTTCACCCTCTGGATGGCTTC
CTTCAGAGTCTCCCTTACCACATATACCCTTTCGTTTTTCCCCTACACAAGGTAGTTTAT
TTAGGTTTGTACATTTTGGTCAATATCTGGACAATTTCCATTCATGACGGTGACTTCCGT
GTTCCCCAGAGCTTAAGGCCATTTATTAATGGCTCAGCCCATCATACAGACCACCATATG
CTCTTTGACTATAACTATGGACAGTACTTCACGTTGTGGGACAGAATTGGAGGCTCATTC
AAAAACCCCTCCTCCTTTGAAGGGAATGGACCACTTGATTATGTGAAGAAGATGACAGAA
GAAAAGTTCAGCAACCATGCAGGAAATGGTTGTAAAAATGAAAAATTATTCAATGGCGAG
GGCAAAAAGGCTGAGTAGATTATTGCCGAATTACTGAATATTTTTAATCAAGAGAAATAA
TCTACATATGTACAGCCAAGAGGCCTAGCACGTGAACAGTATCATTTGAAAATCAGAATG
GTGGGTCCTGCTGAGGAATGATCATGCTGGTAGGTCAAAAGAACATGCTGTGAACACCAA
GGGACTAATGGTGTCTTTCTAGCCAGCAGATCTGCAATTTGTATAGCCTCAACAACAGTT
TTTTAAAAGATAGAGGATAAGTTTTTAAGGGGACCAGGTAATGTCCTTTTGCCTTAATTC
ATCATTATTCATTAAGTAAAATTCATTGTGCTTAATGATATCATGACTAAACACCGTAAC
AACAAAATACTAATGTAAAGATGGTTCCTTGTTTCAGGAATGAGTTCAGTACATAATAAC
AACTACTTGTAGTATGTTGTTCAAGTGGAAACATCAGTATGGGGAAAAAATTGTGATATA
ATAGCAGCTGAGTGACGTGATAGCAGGTGTAATGAGATTATCGTCTTCCTACACACAGAG
AACTTAATCTCTGGGGTCATTGTCAAATATTATATTTTACTGATGAACAAATAAATTGGG
AATTTTAAAAAATATTAATATTACCATGATTTAATCCAGAACTGGGATTATTTAAAGATT
TTGGTAATTATTATTTTAAACCATTATTTAATAAGTATAAAATTATGCAACTCTGAATAT
ATGTAGAAAGGGAAATTTGATACCCAAATAATACATTTGACTCTACTGGGGTTTAGGGGT
CTTTTTGGCCAGGCCCAAGGCATGTCAGAGTTCCCAGGCCAGGGATGAACCCATGCCACA
ACAGCGACCTGAGCCACAGCAGTAACACCACCAGATCCTTAATCTGCTGTACCACAGGGG
AATTCCTAATGGTCCTGGTTTTTTAGTTTAACTGATGCACTGCACTTTTGATGTCTCAAA
GTTACAATCCTGTGATTTTCTGTGAAAGGAAATTGTTGTCAAATATTTAGGCCTATCGCT
TAAGATTAGCTTTAAAATCTTATTTTCTCTCTTTCTTCACTTTTACCCACTTCTTCTGCA
AAATTATTTAACAAATATTTTCATAGAGAAATGTCATGTGTTGTAACATAAACATGAAAA
CATGGTTTGCAAAGGCATTCTGTAAAGTATGTAAAATAAAAGTTGATTATGACTGTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAACAGCACAGAGTCTTCTTTGGACAAATTTTATGTCA
GCCTGAAACCACAGAAATGATGTAGATTGTCAAAACTTTTAGCATCCCTCCAAATGCTTG
ATGTCAAAGGGAGAAAGAGAGAAGTCAGTATCACTTTCTTTGTATATTTCACATCTTTTA
TTAGATTTGAGTGTCATAAAATTTAATGCTTGGGATCCAAAAGAAAAAAAAATTATTTTT
TCTGTTGGAGTTACTGTTCCAGTGTTACTTTACTTAAACATACCAGTATACCAGTTAGTG
TTTGTAATGGGTCGGTGCAGCTGTGTGGTTTTCACTAATCCCCACCGCCAACCCCCTCCC
TGCCCCTGTGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.666539
               

               
               280-458, + strand, RNAz p=0.898971

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.666539
               

               
               280-458, + strand, RNAz p=0.898971

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006918, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006918, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-599, gnl|bosTau2|chr15 (16531421-16532021)
               

               
               1-599, gnl|Hg17|chr11 (120682994-120683621)
               

               
               1-599, gnl|Mm7|chr9 (42190149-42189559)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-599, gnl|bosTau2|chr15 (16531421-16532021)
               

               
               1-599, gnl|Hg17|chr11 (120682994-120683621)
               

               
               1-599, gnl|Mm7|chr9 (42190149-42189559)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               kid (0.389206)
               

               
               gul (0.355177)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               kid (0.389206)
               

               
               gul (0.355177)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	120-239, - strand, RNAz p=0.666539
	280-458, + strand, RNAz p=0.898971

	1-599, gnl\|bosTau2\|chr15 (16531421-16532021)
	1-599, gnl\|Hg17\|chr11 (120682994-120683621)
	1-599, gnl\|Mm7\|chr9 (42190149-42189559)

	fce (0.543183)
	fbs (0.526039)
	kid (0.389206)
	gul (0.355177)
	lun (0.300978)
	fat (0.294855)
	hyp (0.285673)
	sug (0.254582)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	ebs (0.236602)
	nms (0.213858)
	cty (0.20816)
	fcc (0.197785)
	col (0.195008)
	mgm (0.180343)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	liv (0.146284)
	csk (0.140746)
	nca (0.136874)
	lyg (0.133103)
	ute (0.132784)
	ecc (0.115035)
	spc (0.113366)