Non-Coding RNA Search

Ss1.1-Pig4-TMW8059H21.3

Sequence:


               
               GCAGCCGGGGGACATCCTCAGGCTGGTCTCCGACCACGCGGACTCCGGTGTGACAGTGAA
CGGAGAGCTAATCGGAGCCCCCGCGCCCCCCCACGGCCACAAGAAGCAGCGCACTTACTT
CCACGCCATCACCATCCTGGTCAACAAGCCCCAGCGGTCTTACCTGGAGATCACGCCCAG
CCGAGTCATCGTGGACGGTGGGGACAGGCAGGTCCTCCCCTGCAACCAGAGCACCGTGGT
GGGGAGTCGGGGGCTGGAGGTGTCCGTGTCCGCCAACGCCAACGTCACCGTCACCGTCCA
GGGCACCGTGGCCTTCGTTATCCTCTTCCACCTGTACAAAAAGCCAGCCCCCTACCAGCG
CAACCACCTGGGCTTCTACATCGCCAACGGCCAGGGCCTCTCCGGCAACTGCCACGGCCT
GTTAGGTCAGTTTCTGAACCAGGAGGCCCGTCTCACCGAGGAGGCTGCCGGGCTCAGCAA
GAACCCTACCAATCCTCCGGTCCCCGAGGCGGGCGGGAGGTCCAAGGCCATCCTCAAGGT
GAAGGGACACCAGGTCCCAGTGGTGTGGAAGCAGAGGAAAATCTACAACGGGGAAGAGCA
GGTGGACTGCTGGTTTGCCGGGAACAACGCCGCCAACCTGATCGACGGGGAGTACAAGGA
CTACCTGGCGGCGCATCCCTTTGACTCAGAGACCACCTTCGGCCCGGGCGCACCCCGGGG
ACTCTGACACCAGCCGCCTTAACGCTAGGGTGCATGGCAGGGAAGCGTCACCGGGGACCC
CGTGGTGTGGTTCTTGGCACTTGCCCGTGCCTGGTCTCCTGGCCGGTGGCCCCCACCCAT
GTCCCACCCCTGGTGGGTGAGGAGGTCCGCCAGCTGCCTGAGCGAAGGGTGGGGTGGGGA
CATGAATGCGAGGAATGGGGTTTCCTGCTCCCCCCCCATCTCCAGTAGAGACAGATGATG
GCACCAAAGCACAGTTAACAGCAAGAAGCCTCTACCTGGTACCAACTGGCTTGTCGGTCT
CGCAGCCCACCCTGGGCTGACTCTGGAAGGAAGGTGGCCGGAAGGTGTGTCTTCTCTGCG
GAAGTGGCCGAGTTTGGGCAGCCTGCTCTTTGCCTTACACTGATGCTTAGGAATCTCCCG
TCTTGCACTGCTGCCTTCTCTCCGGGTGTGTGGCCAACCTCAGGGGAGCCTCTCCAGTCC
AGGACATGGGTCAGGCAAATAGCACATAGATTTAATCATTGTACACGATTCGGTCTTTTA
GGAGAGGGTTTTCTTCTGCTGTCATCTCTTGCCCTTTGAACATTTGTTTTCATTTAAAAA
AAAAAAAAATGGATTCAAATAGAAACGTTGCAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCGGGGGACATCCTCAGGCTGGTCTCCGACCACGCGGACTCCGGTGTGACAGTGAA
CGGAGAGCTAATCGGAGCCCCCGCGCCCCCCCACGGCCACAAGAAGCAGCGCACTTACTT
CCACGCCATCACCATCCTGGTCAACAAGCCCCAGCGGTCTTACCTGGAGATCACGCCCAG
CCGAGTCATCGTGGACGGTGGGGACAGGCAGGTCCTCCCCTGCAACCAGAGCACCGTGGT
GGGGAGTCGGGGGCTGGAGGTGTCCGTGTCCGCCAACGCCAACGTCACCGTCACCGTCCA
GGGCACCGTGGCCTTCGTTATCCTCTTCCACCTGTACAAAAAGCCAGCCCCCTACCAGCG
CAACCACCTGGGCTTCTACATCGCCAACGGCCAGGGCCTCTCCGGCAACTGCCACGGCCT
GTTAGGTCAGTTTCTGAACCAGGAGGCCCGTCTCACCGAGGAGGCTGCCGGGCTCAGCAA
GAACCCTACCAATCCTCCGGTCCCCGAGGCGGGCGGGAGGTCCAAGGCCATCCTCAAGGT
GAAGGGACACCAGGTCCCAGTGGTGTGGAAGCAGAGGAAAATCTACAACGGGGAAGAGCA
GGTGGACTGCTGGTTTGCCGGGAACAACGCCGCCAACCTGATCGACGGGGAGTACAAGGA
CTACCTGGCGGCGCATCCCTTTGACTCAGAGACCACCTTCGGCCCGGGCGCACCCCGGGG
ACTCTGACACCAGCCGCCTTAACGCTAGGGTGCATGGCAGGGAAGCGTCACCGGGGACCC
CGTGGTGTGGTTCTTGGCACTTGCCCGTGCCTGGTCTCCTGGCCGGTGGCCCCCACCCAT
GTCCCACCCCTGGTGGGTGAGGAGGTCCGCCAGCTGCCTGAGCGAAGGGTGGGGTGGGGA
CATGAATGCGAGGAATGGGGTTTCCTGCTCCCCCCCCATCTCCAGTAGAGACAGATGATG
GCACCAAAGCACAGTTAACAGCAAGAAGCCTCTACCTGGTACCAACTGGCTTGTCGGTCT
CGCAGCCCACCCTGGGCTGACTCTGGAAGGAAGGTGGCCGGAAGGTGTGTCTTCTCTGCG
GAAGTGGCCGAGTTTGGGCAGCCTGCTCTTTGCCTTACACTGATGCTTAGGAATCTCCCG
TCTTGCACTGCTGCCTTCTCTCCGGGTGTGTGGCCAACCTCAGGGGAGCCTCTCCAGTCC
AGGACATGGGTCAGGCAAATAGCACATAGATTTAATCATTGTACACGATTCGGTCTTTTA
GGAGAGGGTTTTCTTCTGCTGTCATCTCTTGCCCTTTGAACATTTGTTTTCATTTAAAAA
AAAAAAAAATGGATTCAAATAGAAACGTTGCAGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61856368|ref|XP_583285.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856368|ref|XP_583285.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               126-245, + strand, RNAz p=0.645736

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-245, + strand, RNAz p=0.645736

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               47-455, gnl|bosTau2|chr13 (8482741-8483148)
               

               
               47-455, gnl|Hg17|chr10 (7648377-7647957)
               

               
               47-455, gnl|Mm7|chr2 (10188246-10188663)
               


               
               470-762, gnl|bosTau2|chr13 (8485269-8485561)
               

               
               470-762, gnl|Hg17|chr10 (7645321-7645004)
               

               
               470-762, gnl|Mm7|chr2 (10190442-10190746)
               


               
               804-1352, gnl|bosTau2|chr13 (8485565-8486125)
               

               
               804-1352, gnl|Hg17|chr10 (7645000-7644384)
               

               
               804-1352, gnl|Mm7|chr2 (10190765-10191326)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-455, gnl|bosTau2|chr13 (8482741-8483148)
               

               
               47-455, gnl|Hg17|chr10 (7648377-7647957)
               

               
               47-455, gnl|Mm7|chr2 (10188246-10188663)
               


               
               470-762, gnl|bosTau2|chr13 (8485269-8485561)
               

               
               470-762, gnl|Hg17|chr10 (7645321-7645004)
               

               
               470-762, gnl|Mm7|chr2 (10190442-10190746)
               


               
               804-1352, gnl|bosTau2|chr13 (8485565-8486125)
               

               
               804-1352, gnl|Hg17|chr10 (7645000-7644384)
               

               
               804-1352, gnl|Mm7|chr2 (10190765-10191326)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cga (0.279096)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	47-455, gnl\|bosTau2\|chr13 (8482741-8483148)
	47-455, gnl\|Hg17\|chr10 (7648377-7647957)
	47-455, gnl\|Mm7\|chr2 (10188246-10188663)

	470-762, gnl\|bosTau2\|chr13 (8485269-8485561)
	470-762, gnl\|Hg17\|chr10 (7645321-7645004)
	470-762, gnl\|Mm7\|chr2 (10190442-10190746)

	804-1352, gnl\|bosTau2\|chr13 (8485565-8486125)
	804-1352, gnl\|Hg17\|chr10 (7645000-7644384)
	804-1352, gnl\|Mm7\|chr2 (10190765-10191326)

	cga (0.279096)
	fce (0.271592)
	cov (0.264306)
	eep (0.245128)
	mas (0.210305)
	nep (0.183925)
	eye (0.170503)
	nco (0.161734)
	hlv (0.139256)
	nca (0.136874)
	ste (0.135208)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)