Ss1.1-Pig4-TMW8059H22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCATCTCATGTGTAGTTGTTGAAAAGGGGACCCCTGGCCTCAGCTTTGGAAAGAAGGAGA AAAAGGTGGGGTGGAACTCACAGCCAACCAGAGCGGTGATCTTTGAAGACTGTGCTGTCC CCGTGGCCAACAGAATCGGGGACGAGGGCCAGGGATTTCTCATTGCCCTGAGAGGACTGA ACGGAGGGAGGATCAATGTCGCGTCCTGCTCCCTGGGTGCTGCCCATGCTTCAATCATCC TCACTCGAGACCACCTCAAGGTCCGGAAGCAGTTTGGAGAGCCCCTGGCCAATAACCAGT ACCTGCAGTTCAAACTGGCTGATATGGCGACCAAGCTGGTAGCCTCAAGGCTGATGATCC GCAGTGCGGCCGTGGCTCTGCAGGAGGAGCGGGAGGATGCAGTGGCCCTGTGCTCCATGG CCAAGCTCTTTGCTACGGATGAATGCTTTGAGATCTGCAATCAGGCTCTGCAGATGCACG GGGGCTATGGCTACCTAAAGGACTACGCAGTCCAGCAGTATGTACGGGACTCCAGGGTCC ACCAGATCCTTGAAGGCAGCAACGAGGTGATGCGGATGCTGATCTCAAAAAGCCTGCTTC AGGAATAGTGCCCACCCTGAGGCCCTCGTGGGTCAGGGCTGAGTGGCTCCACATGGATGG TGCTGTGACAAGTGAGTCATGGACTTCCCCAAAGGGCTGAGCTTTTCTAGAGGACCCTTC ACAGCAGTCATCTGGAAAGCAGGAAGAGCTCCCTTGGTTGGAAATAGCACAAGACGACAT ACTGCCTTGTTTTCCTGATGCAGAAGGATGACCTTTTGAACTCTGACCACCACAGCCTTT TCCCTGGATCCGCCAAGTCTCGATTTGTCTGCATTTTGCTGGTTCACCAGGTCCCTCTTC TGGGAGTCTGGGTACTTCCGTTGAATATTTTTCCTAATTGTAAAGCAAAGGTGTGGGAAA CGAGAAATGAAGAGAAAATGTCTCCCTGTCTTTTTCTGTCCTTTGTGCCTCAACCAAAGA TGCTAGAGGTTTCTGTGGGCTGCACTTCCTCTGCAGGAACTCCTCTCAGTGTAAATCGCA ATGAAATCAATGTTTGGGAACTCTTCTCCTGAGCTGTGAGTTAGGGTGTATCTGCACTTC TAGACTAACTGAATATCAAGGGCTGAGATTATTTGGAACTGTAATATTTGCAGCTTTAGA AGCACATGGTCTAGGAATGTTTCTCAGAGTTTCTCTAATACTTCCTGATAAATGCTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCATCTCATGTGTAGTTGTTGAAAAGGGGACCCCTGGCCTCAGCTTTGGAAAGAAGGAGA AAAAGGTGGGGTGGAACTCACAGCCAACCAGAGCGGTGATCTTTGAAGACTGTGCTGTCC CCGTGGCCAACAGAATCGGGGACGAGGGCCAGGGATTTCTCATTGCCCTGAGAGGACTGA ACGGAGGGAGGATCAATGTCGCGTCCTGCTCCCTGGGTGCTGCCCATGCTTCAATCATCC TCACTCGAGACCACCTCAAGGTCCGGAAGCAGTTTGGAGAGCCCCTGGCCAATAACCAGT ACCTGCAGTTCAAACTGGCTGATATGGCGACCAAGCTGGTAGCCTCAAGGCTGATGATCC GCAGTGCGGCCGTGGCTCTGCAGGAGGAGCGGGAGGATGCAGTGGCCCTGTGCTCCATGG CCAAGCTCTTTGCTACGGATGAATGCTTTGAGATCTGCAATCAGGCTCTGCAGATGCACG GGGGCTATGGCTACCTAAAGGACTACGCAGTCCAGCAGTATGTACGGGACTCCAGGGTCC ACCAGATCCTTGAAGGCAGCAACGAGGTGATGCGGATGCTGATCTCAAAAAGCCTGCTTC AGGAATAGTGCCCACCCTGAGGCCCTCGTGGGTCAGGGCTGAGTGGCTCCACATGGATGG TGCTGTGACAAGTGAGTCATGGACTTCCCCAAAGGGCTGAGCTTTTCTAGAGGACCCTTC ACAGCAGTCATCTGGAAAGCAGGAAGAGCTCCCTTGGTTGGAAATAGCACAAGACGACAT ACTGCCTTGTTTTCCTGATGCAGAAGGATGACCTTTTGAACTCTGACCACCACAGCCTTT TCCCTGGATCCGCCAAGTCTCGATTTGTCTGCATTTTGCTGGTTCACCAGGTCCCTCTTC TGGGAGTCTGGGTACTTCCGTTGAATATTTTTCCTAATTGTAAAGCAAAGGTGTGGGAAA CGAGAAATGAAGAGAAAATGTCTCCCTGTCTTTTTCTGTCCTTTGTGCCTCAACCAAAGA TGCTAGAGGTTTCTGTGGGCTGCACTTCCTCTGCAGGAACTCCTCTCAGTGTAAATCGCA ATGAAATCAATGTTTGGGAACTCTTCTCCTGAGCTGTGAGTTAGGGTGTATCTGCACTTC TAGACTAACTGAATATCAAGGGCTGAGATTATTTGGAACTGTAATATTTGCAGCTTTAGA AGCACATGGTCTAGGAATGTTTCTCAGAGTTTCTCTAATACTTCCTGATAAATGCTTTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 64-199, gnl|bosTau2|chr15 (53480770-53480905) | |
| 64-199, gnl|canFam2|chr5 (3983676-3983520) | |
| 64-199, gnl|danRer3|chr15 (9457396-9457553) | |
| 64-199, gnl|dasNov1|scaffold_25155 (5642-5486) | |
| 64-199, gnl|fr1|chrUn (15909669-15909828) | |
| 64-199, gnl|galGal2|chr24 (2497859-2498012) | |
| 64-199, gnl|hg17|chr11 (133636135-133636291) | |
| 64-199, gnl|Hg17|chr11 (133636146-133636281) | |
| 64-199, gnl|loxAfr1|scaffold_583 (75710-75554) | |
| 64-199, gnl|mm7|chr9 (26862309-26862153) | |
| 64-199, gnl|Mm7|chr9 (26862296-26862161) | |
| 64-199, gnl|monDom2|scaffold_15 (25059417-25059572) | |
| 64-199, gnl|panTro1|chr9 (135872844-135873001) | |
| 64-199, gnl|rheMac2|chr14 (132265006-132265162) | |
| 64-199, gnl|tetNig1|chr16 (2841853-2841707) | |
| 64-199, gnl|xenTro1|scaffold_328 (211354-211202) | |
| 297-450, gnl|bosTau2|chr15 (53483354-53483507) | |
| 297-450, gnl|Hg17|chr11 (133636839-133636992) | |
| 297-450, gnl|Mm7|chr9 (26861449-26861296) | |
| 451-556, gnl|bosTau2|chr15 (53483677-53483782) | |
| 451-556, gnl|canFam2|chr5 (3982219-3982144) | |
| 451-556, gnl|danRer3|chr15 (9460809-9460884) | |
| 451-556, gnl|dasNov1|scaffold_25155 (4466-4391) | |
| 451-556, gnl|fr1|chrUn (15910362-15910432) | |
| 451-556, gnl|galGal2|chr24 (2499501-2499574) | |
| 451-556, gnl|hg17|chr11 (133637613-133637688) | |
| 451-556, gnl|Hg17|chr11 (133637622-133637727) | |
| 451-556, gnl|loxAfr1|scaffold_583 (72988-72913) | |
| 451-556, gnl|mm7|chr9 (26860654-26860579) | |
| 451-556, gnl|Mm7|chr9 (26860643-26860538) | |
| 451-556, gnl|monDom2|scaffold_15 (25062293-25062368) | |
| 451-556, gnl|oryCun1|scaffold_162704 (10745-10819) | |
| 451-556, gnl|panTro1|chr9 (135874326-135874401) | |
| 451-556, gnl|rheMac2|chr14 (132266498-132266573) | |
| 451-556, gnl|rn3|chr8 (26631387-26631312) | |
| 451-556, gnl|tetNig1|chr16 (2841118-2841043) | |
| 451-556, gnl|xenTro1|scaffold_328 (193956-193878) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-199, gnl|bosTau2|chr15 (53480770-53480905) | |
| 64-199, gnl|canFam2|chr5 (3983676-3983520) | |
| 64-199, gnl|danRer3|chr15 (9457396-9457553) | |
| 64-199, gnl|dasNov1|scaffold_25155 (5642-5486) | |
| 64-199, gnl|fr1|chrUn (15909669-15909828) | |
| 64-199, gnl|galGal2|chr24 (2497859-2498012) | |
| 64-199, gnl|hg17|chr11 (133636135-133636291) | |
| 64-199, gnl|Hg17|chr11 (133636146-133636281) | |
| 64-199, gnl|loxAfr1|scaffold_583 (75710-75554) | |
| 64-199, gnl|mm7|chr9 (26862309-26862153) | |
| 64-199, gnl|Mm7|chr9 (26862296-26862161) | |
| 64-199, gnl|monDom2|scaffold_15 (25059417-25059572) | |
| 64-199, gnl|panTro1|chr9 (135872844-135873001) | |
| 64-199, gnl|rheMac2|chr14 (132265006-132265162) | |
| 64-199, gnl|tetNig1|chr16 (2841853-2841707) | |
| 64-199, gnl|xenTro1|scaffold_328 (211354-211202) | |
| 297-450, gnl|bosTau2|chr15 (53483354-53483507) | |
| 297-450, gnl|Hg17|chr11 (133636839-133636992) | |
| 297-450, gnl|Mm7|chr9 (26861449-26861296) | |
| 451-556, gnl|bosTau2|chr15 (53483677-53483782) | |
| 451-556, gnl|canFam2|chr5 (3982219-3982144) | |
| 451-556, gnl|danRer3|chr15 (9460809-9460884) | |
| 451-556, gnl|dasNov1|scaffold_25155 (4466-4391) | |
| 451-556, gnl|fr1|chrUn (15910362-15910432) | |
| 451-556, gnl|galGal2|chr24 (2499501-2499574) | |
| 451-556, gnl|hg17|chr11 (133637613-133637688) | |
| 451-556, gnl|Hg17|chr11 (133637622-133637727) | |
| 451-556, gnl|loxAfr1|scaffold_583 (72988-72913) | |
| 451-556, gnl|mm7|chr9 (26860654-26860579) | |
| 451-556, gnl|Mm7|chr9 (26860643-26860538) | |
| 451-556, gnl|monDom2|scaffold_15 (25062293-25062368) | |
| 451-556, gnl|oryCun1|scaffold_162704 (10745-10819) | |
| 451-556, gnl|panTro1|chr9 (135874326-135874401) | |
| 451-556, gnl|rheMac2|chr14 (132266498-132266573) | |
| 451-556, gnl|rn3|chr8 (26631387-26631312) | |
| 451-556, gnl|tetNig1|chr16 (2841118-2841043) | |
| 451-556, gnl|xenTro1|scaffold_328 (193956-193878) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| tbr (0.462535) | |
| amn (0.417711) | |
| cte (0.29274) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| cki (0.165235) | |
| cje (0.165235) | |
| mga (0.160205) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.462535) | |
| amn (0.417711) | |
| cte (0.29274) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| cki (0.165235) | |
| cje (0.165235) | |
| mga (0.160205) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) |