Non-Coding RNA Search

Ss1.1-Pig4-TMW8059I03.5

Sequence:


               
               GTTGGTTCATAGGATCAGTCCTCAGACAACGGAATTTTGTGCCCAACTTGGCATCACTGA
CATTAATGTCAGGCTTCAGAAGGCCAAGGAAGAACAGCACTTGTGTGGCGACTATGAAGG
GCAGGATGCGGTGGAGAGCAATGACTCTGGAGAAGACCCTAGTGAATATAACACAGACAC
ATCTGCCCTGTCCTCGATTAATCCAGATGAGATAATGTTAGATGAAGAAGAGGATTATGA
AGATAGTATTGTAAGTGCACACAGTGACACAAACACACCTTCTGCAGAACCTTCTGACCA
AGCTTCTGACTTTTCCACGAGCTTCTCTGACGTGAGGATCTTGCCAAGTTCCATGATTGT
ATCTTCTGATGATACATCAGGTTCCCCAGTTGGCAAAGAGGGGAATTCTGGTGAGCCTCT
GGAGTTGGGGGATGGAAAGGTGCCCTTGAAGAGGCTGAGTAACGAACATGAACCTGAACA
AAGAAAGAAGATCAAGAGGAGGAATCAAGCCATTTACGCTGCAGTGGATGATGATGATAC
AGCCTAAGACAGTTTACTTGTCTTAGTAGTATATGTAGATATGTGATTTTTGAGACTATA
TTTTTAGAGTTGGCTCTTTGACTTAAAACTTTGTAATAATGAAGTTGTATAAGAAAGCTT
TAGTTAGATATTGACTCAAGGCTTTTGTATGTTTCAGATAAAAAATATTAAAATTTCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGTTCATAGGATCAGTCCTCAGACAACGGAATTTTGTGCCCAACTTGGCATCACTGA
CATTAATGTCAGGCTTCAGAAGGCCAAGGAAGAACAGCACTTGTGTGGCGACTATGAAGG
GCAGGATGCGGTGGAGAGCAATGACTCTGGAGAAGACCCTAGTGAATATAACACAGACAC
ATCTGCCCTGTCCTCGATTAATCCAGATGAGATAATGTTAGATGAAGAAGAGGATTATGA
AGATAGTATTGTAAGTGCACACAGTGACACAAACACACCTTCTGCAGAACCTTCTGACCA
AGCTTCTGACTTTTCCACGAGCTTCTCTGACGTGAGGATCTTGCCAAGTTCCATGATTGT
ATCTTCTGATGATACATCAGGTTCCCCAGTTGGCAAAGAGGGGAATTCTGGTGAGCCTCT
GGAGTTGGGGGATGGAAAGGTGCCCTTGAAGAGGCTGAGTAACGAACATGAACCTGAACA
AAGAAAGAAGATCAAGAGGAGGAATCAAGCCATTTACGCTGCAGTGGATGATGATGATAC
AGCCTAAGACAGTTTACTTGTCTTAGTAGTATATGTAGATATGTGATTTTTGAGACTATA
TTTTTAGAGTTGGCTCTTTGACTTAAAACTTTGTAATAATGAAGTTGTATAAGAAAGCTT
TAGTTAGATATTGACTCAAGGCTTTTGTATGTTTCAGATAAAAAATATTAAAATTTCATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26346599|dbj|BAC36948.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26346599|dbj|BAC36948.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-236, + strand, RNAz p=0.993715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-236, + strand, RNAz p=0.993715

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016216, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016216, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr1 (82329916-82330663)
               

               
               1-720, gnl|Hg17|chr3 (139363990-139362918)
               

               
               1-720, gnl|Mm7|chr9 (99226438-99227192)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr1 (82329916-82330663)
               

               
               1-720, gnl|Hg17|chr3 (139363990-139362918)
               

               
               1-720, gnl|Mm7|chr9 (99226438-99227192)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               ret (0.128733)

	1-720, gnl\|bosTau2\|chr1 (82329916-82330663)
	1-720, gnl\|Hg17\|chr3 (139363990-139362918)
	1-720, gnl\|Mm7\|chr9 (99226438-99227192)