Non-Coding RNA Search

Ss1.1-Pig4-TMW8059I04.3

Sequence:


               
               CCTGGGAAGATCCCAGGACTCTGGGAAGGCCAGAACTTTCAGAGGAAACAGCCGTGACTC
CTCGCCATCTGCTCTGATTCTCTCCTGACCCCACTGCCTTGAGGTATTAGGAAGAGGGCA
GGCCTGTGTGGCAGGCTCTGTGCTGCCACCAGCCCCTTCCCCAGGCAGGCCAACAATACT
CCAAAGTGGGGCACTTTCTTCTCTGGAAACTAAGACATTGGACAGAAAGGACTGGCTTAG
GGGCAGCAGCTGCCTGGTCCTCTATGCACAGAGGCCACCAGGGGTCACGGGCAGGCGCCT
CAGCCCAAGGGCACTAGTCTTTCTCCTTCCAGGATCTCCTGGGAAGGGCTGCAGGCCCTC
CTGACTTGGTGACTCAGGCAGCCCTCTGCTCAGGAGCCGGGCTTGCCCCCAGAGACAGCT
AGAGGAAGGCCAGGCTCGCGGGCCTGCCCTTGGCTGCAGCAAGTATCTGGCCCTTCCTGC
TGTTTCCAGGGCCTCTGGAAGCACCGACCCATTTCTGTTACCTCTTCTGGCCAGAAAGCC
CCAGCATTGTCCTCCGGAGCTACTCTGGGCTCAGTGCTGGCCCTGTGACCACCTGATGGA
CATGCCAGGCAGCCAGGGCCCCAACCACGGCATTTCCAGCTGCTCCCCCAACCCACCCAC
AGCTGCCCGGCAGCTGGGCCCACCGGGGCTCTGGGGACACTTCCATAGGAAGGGGCCAGC
ACTTTGTGACTGCCGTGTCTTTAGTGTTAAGCCCCCTGCCCCCAGTGCAAATCCCTGTGT
TTTGCTATCTCCTGAACAAAATGTAAACCGACGCCTGAAAGCAAGAGGTATCGAATACCT
TTCTTACCCATAAGGGTTTTCTACAAAGAATGTGTCTCACTAGGAACTGGGATACTCATT
GGCCGAGACCAACTCCTGGATAAAAGGAATAAAGGAGAATCGTGTTTGTAATAAGTTACA
GGATTGTTTCTGTCCTGGATTTTAAACTTTTTGTTAAATTGTGAAATTATGGAGGAGTTT
TATAGAAAAAAAAGTGAAATAAAGTCAGATGGGAAAGCAGACCTTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGAAGATCCCAGGACTCTGGGAAGGCCAGAACTTTCAGAGGAAACAGCCGTGACTC
CTCGCCATCTGCTCTGATTCTCTCCTGACCCCACTGCCTTGAGGTATTAGGAAGAGGGCA
GGCCTGTGTGGCAGGCTCTGTGCTGCCACCAGCCCCTTCCCCAGGCAGGCCAACAATACT
CCAAAGTGGGGCACTTTCTTCTCTGGAAACTAAGACATTGGACAGAAAGGACTGGCTTAG
GGGCAGCAGCTGCCTGGTCCTCTATGCACAGAGGCCACCAGGGGTCACGGGCAGGCGCCT
CAGCCCAAGGGCACTAGTCTTTCTCCTTCCAGGATCTCCTGGGAAGGGCTGCAGGCCCTC
CTGACTTGGTGACTCAGGCAGCCCTCTGCTCAGGAGCCGGGCTTGCCCCCAGAGACAGCT
AGAGGAAGGCCAGGCTCGCGGGCCTGCCCTTGGCTGCAGCAAGTATCTGGCCCTTCCTGC
TGTTTCCAGGGCCTCTGGAAGCACCGACCCATTTCTGTTACCTCTTCTGGCCAGAAAGCC
CCAGCATTGTCCTCCGGAGCTACTCTGGGCTCAGTGCTGGCCCTGTGACCACCTGATGGA
CATGCCAGGCAGCCAGGGCCCCAACCACGGCATTTCCAGCTGCTCCCCCAACCCACCCAC
AGCTGCCCGGCAGCTGGGCCCACCGGGGCTCTGGGGACACTTCCATAGGAAGGGGCCAGC
ACTTTGTGACTGCCGTGTCTTTAGTGTTAAGCCCCCTGCCCCCAGTGCAAATCCCTGTGT
TTTGCTATCTCCTGAACAAAATGTAAACCGACGCCTGAAAGCAAGAGGTATCGAATACCT
TTCTTACCCATAAGGGTTTTCTACAAAGAATGTGTCTCACTAGGAACTGGGATACTCATT
GGCCGAGACCAACTCCTGGATAAAAGGAATAAAGGAGAATCGTGTTTGTAATAAGTTACA
GGATTGTTTCTGTCCTGGATTTTAAACTTTTTGTTAAATTGTGAAATTATGGAGGAGTTT
TATAGAAAAAAAAGTGAAATAAAGTCAGATGGGAAAGCAGACCTTTAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               469-743, - strand, RNAz p=0.975523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-743, - strand, RNAz p=0.975523

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-341, gnl|bosTau2|chr7 (14116130-14116467)
               

               
               2-341, gnl|Hg17|chr19 (6162417-6162067)
               


               
               353-860, gnl|bosTau2|chr7 (14116457-14116966)
               

               
               353-860, gnl|Hg17|chr19 (6162077-6161594)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-341, gnl|bosTau2|chr7 (14116130-14116467)
               

               
               2-341, gnl|Hg17|chr19 (6162417-6162067)
               


               
               353-860, gnl|bosTau2|chr7 (14116457-14116966)
               

               
               353-860, gnl|Hg17|chr19 (6162077-6161594)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cki (0.330469)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	2-341, gnl\|bosTau2\|chr7 (14116130-14116467)
	2-341, gnl\|Hg17\|chr19 (6162417-6162067)

	353-860, gnl\|bosTau2\|chr7 (14116457-14116966)
	353-860, gnl\|Hg17\|chr19 (6162077-6161594)

	cki (0.330469)
	sto (0.179824)
	eye (0.170503)
	cut (0.169924)
	csp (0.161186)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	ese (0.126502)
	eru (0.120048)
	pgl (0.118483)
	nbm (0.0993246)