Non-Coding RNA Search

Ss1.1-Pig4-TMW8059I05.3

Sequence:


               
               AATTTAGAGGCTACCAGGCAGTGAAGACCCCTCGCCTAGTCGCTGTCGCTCCCCCCGCAG
TAGCCGGAATTGGACTTCGGCTTTCCAGCCCGCGGCTCCTTCACCGCCTCGCTTCCCACC
CGTGCCCCCGGCTTCCCGGGATCCGAATTTGTAGGCCTCTTAAAGGGTCCCAGTTGCTCT
TCGCCCGGTGCTCCAGAGCGGAAGTGGGGGTCCTGGACTTTGGTCCCAGACGTTGAGGAT
CGGAATGGCTTCCGTGCTCATCCGAGAGGCCAAGGAGGGAGACTGTGGAAATATCCTGAG
GATGATTCGGGAACTCGCCGAGTACGAGAAACTGTCCGACCAGGTGAAGATCAGTGAAGA
AGCCCTGAGAGCAGACGGCTTCGGAGAGAATCCTTTCTTTCACTGTTTGGTAGCAGAGAT
TCTTCCTGCCCCTGGGGAGCCACAGGGGTCTTGCATGGTGGGCTATGGGCTGTACTACTT
CATCTATAGCACATGGACCGGACGGAATATTTATCTGGAAGACATCTACGTGAAGCCAGA
ATATCGGGGTCAGGGGATTGGTTCCAAAATAATCAAAAAAGTGGCTGAGGTGGCCCTGGA
TAAGGGCTGCTCCCAGTTCCGCCTGGCAGTCCTGGACTGGAACAAGAAGGCCGTGGACTT
GTACAAGACCCTAGGAGCCCGAGATCTGACGGAAGCGGAAGGCTGGCATTCCTTTCGCTT
CGAGGGAGAGGCAATGAGGGAGTTGGCAGGAAAGTGACATTATCCCTTGGGGATCACTCT
TTTGGCTTCTCCAGCCCCACCAGCTCAAGCACTCCTCAGAGACTGTCTCTACGGACCAAG
GCCTCCCTGAAGGAAGGAGGATTGGTGGTGAATAGTCCCAAAGGGAAGGAGCAAAAGTGA
GGAAGAGGCCTTGCCACCCCCTTGTTCAGGGTGAAAAATAAATGAGAATTTCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTAGAGGCTACCAGGCAGTGAAGACCCCTCGCCTAGTCGCTGTCGCTCCCCCCGCAG
TAGCCGGAATTGGACTTCGGCTTTCCAGCCCGCGGCTCCTTCACCGCCTCGCTTCCCACC
CGTGCCCCCGGCTTCCCGGGATCCGAATTTGTAGGCCTCTTAAAGGGTCCCAGTTGCTCT
TCGCCCGGTGCTCCAGAGCGGAAGTGGGGGTCCTGGACTTTGGTCCCAGACGTTGAGGAT
CGGAATGGCTTCCGTGCTCATCCGAGAGGCCAAGGAGGGAGACTGTGGAAATATCCTGAG
GATGATTCGGGAACTCGCCGAGTACGAGAAACTGTCCGACCAGGTGAAGATCAGTGAAGA
AGCCCTGAGAGCAGACGGCTTCGGAGAGAATCCTTTCTTTCACTGTTTGGTAGCAGAGAT
TCTTCCTGCCCCTGGGGAGCCACAGGGGTCTTGCATGGTGGGCTATGGGCTGTACTACTT
CATCTATAGCACATGGACCGGACGGAATATTTATCTGGAAGACATCTACGTGAAGCCAGA
ATATCGGGGTCAGGGGATTGGTTCCAAAATAATCAAAAAAGTGGCTGAGGTGGCCCTGGA
TAAGGGCTGCTCCCAGTTCCGCCTGGCAGTCCTGGACTGGAACAAGAAGGCCGTGGACTT
GTACAAGACCCTAGGAGCCCGAGATCTGACGGAAGCGGAAGGCTGGCATTCCTTTCGCTT
CGAGGGAGAGGCAATGAGGGAGTTGGCAGGAAAGTGACATTATCCCTTGGGGATCACTCT
TTTGGCTTCTCCAGCCCCACCAGCTCAAGCACTCCTCAGAGACTGTCTCTACGGACCAAG
GCCTCCCTGAAGGAAGGAGGATTGGTGGTGAATAGTCCCAAAGGGAAGGAGCAAAAGTGA
GGAAGAGGCCTTGCCACCCCCTTGTTCAGGGTGAAAAATAAATGAGAATTTCTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32263929|tpg|DAA01468.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32263929|tpg|DAA01468.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               122-239, + strand, RNAz p=0.967622
               

               
               848-953, - strand, RNAz p=0.833795

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-239, + strand, RNAz p=0.967622
               

               
               848-953, - strand, RNAz p=0.833795

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_133491, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_133491, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-239, gnl|bosTau2|chr19 (13314698-13314466)
               

               
               1-239, gnl|Hg17|chr17 (7471917-7471684)
               


               
               446-557, gnl|bosTau2|chr19 (13313827-13313716)
               

               
               446-557, gnl|canFam2|chr5 (35530754-35530870)
               

               
               446-557, gnl|dasNov1|scaffold_34195 (9185-9085)
               

               
               446-557, gnl|echTel1|scaffold_314278 (1222-1339)
               

               
               446-557, gnl|fr1|chrUn (157286705-157286791)
               

               
               446-557, gnl|hg17|chr17 (7470967-7471086)
               

               
               446-557, gnl|Hg17|chr17 (7471088-7470977)
               

               
               446-557, gnl|mm7|chr11 (69704555-69704437)
               

               
               446-557, gnl|Mm7|chr11 (69704433-69704544)
               

               
               446-557, gnl|monDom2|scaffold_66 (4739744-4739846)
               

               
               446-557, gnl|oryCun1|scaffold_83442 (1316-1430)
               

               
               446-557, gnl|panTro1|chr19_random (44279736-44279617)
               

               
               446-557, gnl|rheMac2|chr16 (7356306-7356425)
               

               
               446-557, gnl|rn3|chr10 (56455166-56455048)
               

               
               446-557, gnl|tetNig1|chr7 (4970466-4970348)
               


               
               588-953, gnl|bosTau2|chr19 (13313425-13313052)
               

               
               588-953, gnl|Hg17|chr17 (7470659-7470286)
               

               
               588-953, gnl|Mm7|chr11 (69705063-69705411)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-239, gnl|bosTau2|chr19 (13314698-13314466)
               

               
               1-239, gnl|Hg17|chr17 (7471917-7471684)
               


               
               446-557, gnl|bosTau2|chr19 (13313827-13313716)
               

               
               446-557, gnl|canFam2|chr5 (35530754-35530870)
               

               
               446-557, gnl|dasNov1|scaffold_34195 (9185-9085)
               

               
               446-557, gnl|echTel1|scaffold_314278 (1222-1339)
               

               
               446-557, gnl|fr1|chrUn (157286705-157286791)
               

               
               446-557, gnl|hg17|chr17 (7470967-7471086)
               

               
               446-557, gnl|Hg17|chr17 (7471088-7470977)
               

               
               446-557, gnl|mm7|chr11 (69704555-69704437)
               

               
               446-557, gnl|Mm7|chr11 (69704433-69704544)
               

               
               446-557, gnl|monDom2|scaffold_66 (4739744-4739846)
               

               
               446-557, gnl|oryCun1|scaffold_83442 (1316-1430)
               

               
               446-557, gnl|panTro1|chr19_random (44279736-44279617)
               

               
               446-557, gnl|rheMac2|chr16 (7356306-7356425)
               

               
               446-557, gnl|rn3|chr10 (56455166-56455048)
               

               
               446-557, gnl|tetNig1|chr7 (4970466-4970348)
               


               
               588-953, gnl|bosTau2|chr19 (13313425-13313052)
               

               
               588-953, gnl|Hg17|chr17 (7470659-7470286)
               

               
               588-953, gnl|Mm7|chr11 (69705063-69705411)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eep (0.245128)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	122-239, + strand, RNAz p=0.967622
	848-953, - strand, RNAz p=0.833795

	1-239, gnl\|bosTau2\|chr19 (13314698-13314466)
	1-239, gnl\|Hg17\|chr17 (7471917-7471684)

	446-557, gnl\|bosTau2\|chr19 (13313827-13313716)
	446-557, gnl\|canFam2\|chr5 (35530754-35530870)
	446-557, gnl\|dasNov1\|scaffold_34195 (9185-9085)
	446-557, gnl\|echTel1\|scaffold_314278 (1222-1339)
	446-557, gnl\|fr1\|chrUn (157286705-157286791)
	446-557, gnl\|hg17\|chr17 (7470967-7471086)
	446-557, gnl\|Hg17\|chr17 (7471088-7470977)
	446-557, gnl\|mm7\|chr11 (69704555-69704437)
	446-557, gnl\|Mm7\|chr11 (69704433-69704544)
	446-557, gnl\|monDom2\|scaffold_66 (4739744-4739846)
	446-557, gnl\|oryCun1\|scaffold_83442 (1316-1430)
	446-557, gnl\|panTro1\|chr19_random (44279736-44279617)
	446-557, gnl\|rheMac2\|chr16 (7356306-7356425)
	446-557, gnl\|rn3\|chr10 (56455166-56455048)
	446-557, gnl\|tetNig1\|chr7 (4970466-4970348)

	588-953, gnl\|bosTau2\|chr19 (13313425-13313052)
	588-953, gnl\|Hg17\|chr17 (7470659-7470286)
	588-953, gnl\|Mm7\|chr11 (69705063-69705411)

	eep (0.245128)
	cmu (0.186393)
	nep (0.183925)
	nje (0.16592)
	spl (0.143184)
	nbm (0.0993246)
	jej (0.0989218)