Ss1.1-Pig4-TMW8059I10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCGTCCGCGACGCGTGCGGCTGCTGCGAGGTGTGTGGCGCGCCCGAGGGGGCCG AGTGCGGCCTGCAGGAGGGCCCGTGCGGCGAGGGGCTGCAGTGCGTGGTGCCCTTCGGGG TGCCCGCCTCGGCCACGGTGCGGCGGCGCGCGCAGGCCGGCCTCTGCGTGTGCGCCAGCA ACGAGCCGGTGTGCGGCAGCGACGCCAACACCTACGCCAACCTGTGCCAGCTGCGCGCTG CCAGCCGCCGTTCCGAGAGGCTGCACCAGCCGCCGGTCATCGTCTTGCAGCGCGGCGCCT GCGGCCAAGGGCAAGAAGATCCCAACAGTTTGCGCCACAAATACAACTTTATTGCCGACG TGGTGGAGAAAATCGCTCCTGCTGTGGTTCACATCGAACTGTTTCGCAAGCTTCCTTTTT CTAAGAGGGAAGTACCGGTGGCCAGTGGGTCTGGGTTTATCGTGTCCGAAGATGGACTGA TTGTGACAAATGCCCACGTGGTGACCAACAAGCACCGGGTCAAAGTCGAGCTGAAGAACG GCGCCACCTATGAAGCCAAAATCAAAGATGTGGATGAGAAGGCAGACATCGCGCTTATCA AAATTGACCATCAGGGAAAGCTGCCCGTGCTACTGCTTGGCCGCTCCTCCGAGCTGCGGC CGGGGGAGTTCGTGGTCGCCATCGGAAGCCCGTTTTCCCTTCAAAACACAGTCACCACCG GCATCGTCAGCACCACCCAGCGCGGCGGCAAAGAGCTGGGGCTGCGGAACTCGGACATGG ACTATATCCAGACAGACGCCATCATCAACTATGGAAATTCCGGAGGCCCATTAGTAAACC TGGACGGTGAAGTGATAGGCATTAATACTCTGAAAGTGACAGCTGGAATCTCCTTTGCAA TTCCATCCGACAAGATTAAAAAGTTCCTAACGGAATCCCACGACCGACAAGCCAAGGGCA AAGCCATCACCAAGAAGAAGTATATTGGCATCCGAATGATGTCACTCACGTCCAGCAAAG CCAAAGAGCTGAAGGATCGCCACCGAGACTTCCCAGATGTGATTTCAGGAGCGTATATCA TTGAAGTAATTCCTGATACCCCTGCAGAAGCCGGTGGGCTCAAGGAAAATGATGTCATCA TCAGCATCAACGGCCAGTCGGTGGTCTCCGCCAACGACGTCAGCGACGTCATTAAGAAGG AAAGCACCCTGAACATGGTGGTCCGCAGGGGCAATGAAGACGTCATGGTCACCGTGATTC CCGAAGAAATCGACCCGTAGGCAGAGGCATGAGCTGGACTTCATGTTTCTCTCAGAGACT CTCCAGGGGACGATGCGTGATGCCTCTGGGCTGGTGGCTCCGGAAGCGCAAGACTTTGGA CCGCCTTGTTGCTTGTTCAGCACAAACCCTCTGGCCGATCGACTCCTTCTCGATAGTCCG CAGGCAAAGCGAGTGTAAGGTTGTAGATGCGCAGGCAGAGCCCGCCCTTCTGTATCCTAT GTATGCAGTGTGCTTTCTCCCGCCAGCTTGGACTGTTCCGGCTCGGACAGTCGACATCTG TCTCCTCCTTTAACTGAGTCATCATCCTAGTCCAGCTAAGGCTGTTGCTGTAAAGCATAG ATAAGAGGAAGGTCCCGTGGGAGCCAGAATGGTACCAGGCGTGCTTATGCTTTCCTTCGA GTCCGCACCCAGAGGAGGGCGATGCCGAGACCCAAGGGAGGGCGAACGCTGGCTCCCAAG ATGGCCAAGGTTGCCTCTTTTAGGAACCTCTTCAGGACTGGGGAGCACCATGACTTGGAG TTTGAGCTATTAAAATACTTCTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCGTCCGCGACGCGTGCGGCTGCTGCGAGGTGTGTGGCGCGCCCGAGGGGGCCG AGTGCGGCCTGCAGGAGGGCCCGTGCGGCGAGGGGCTGCAGTGCGTGGTGCCCTTCGGGG TGCCCGCCTCGGCCACGGTGCGGCGGCGCGCGCAGGCCGGCCTCTGCGTGTGCGCCAGCA ACGAGCCGGTGTGCGGCAGCGACGCCAACACCTACGCCAACCTGTGCCAGCTGCGCGCTG CCAGCCGCCGTTCCGAGAGGCTGCACCAGCCGCCGGTCATCGTCTTGCAGCGCGGCGCCT GCGGCCAAGGGCAAGAAGATCCCAACAGTTTGCGCCACAAATACAACTTTATTGCCGACG TGGTGGAGAAAATCGCTCCTGCTGTGGTTCACATCGAACTGTTTCGCAAGCTTCCTTTTT CTAAGAGGGAAGTACCGGTGGCCAGTGGGTCTGGGTTTATCGTGTCCGAAGATGGACTGA TTGTGACAAATGCCCACGTGGTGACCAACAAGCACCGGGTCAAAGTCGAGCTGAAGAACG GCGCCACCTATGAAGCCAAAATCAAAGATGTGGATGAGAAGGCAGACATCGCGCTTATCA AAATTGACCATCAGGGAAAGCTGCCCGTGCTACTGCTTGGCCGCTCCTCCGAGCTGCGGC CGGGGGAGTTCGTGGTCGCCATCGGAAGCCCGTTTTCCCTTCAAAACACAGTCACCACCG GCATCGTCAGCACCACCCAGCGCGGCGGCAAAGAGCTGGGGCTGCGGAACTCGGACATGG ACTATATCCAGACAGACGCCATCATCAACTATGGAAATTCCGGAGGCCCATTAGTAAACC TGGACGGTGAAGTGATAGGCATTAATACTCTGAAAGTGACAGCTGGAATCTCCTTTGCAA TTCCATCCGACAAGATTAAAAAGTTCCTAACGGAATCCCACGACCGACAAGCCAAGGGCA AAGCCATCACCAAGAAGAAGTATATTGGCATCCGAATGATGTCACTCACGTCCAGCAAAG CCAAAGAGCTGAAGGATCGCCACCGAGACTTCCCAGATGTGATTTCAGGAGCGTATATCA TTGAAGTAATTCCTGATACCCCTGCAGAAGCCGGTGGGCTCAAGGAAAATGATGTCATCA TCAGCATCAACGGCCAGTCGGTGGTCTCCGCCAACGACGTCAGCGACGTCATTAAGAAGG AAAGCACCCTGAACATGGTGGTCCGCAGGGGCAATGAAGACGTCATGGTCACCGTGATTC CCGAAGAAATCGACCCGTAGGCAGAGGCATGAGCTGGACTTCATGTTTCTCTCAGAGACT CTCCAGGGGACGATGCGTGATGCCTCTGGGCTGGTGGCTCCGGAAGCGCAAGACTTTGGA CCGCCTTGTTGCTTGTTCAGCACAAACCCTCTGGCCGATCGACTCCTTCTCGATAGTCCG CAGGCAAAGCGAGTGTAAGGTTGTAGATGCGCAGGCAGAGCCCGCCCTTCTGTATCCTAT GTATGCAGTGTGCTTTCTCCCGCCAGCTTGGACTGTTCCGGCTCGGACAGTCGACATCTG TCTCCTCCTTTAACTGAGTCATCATCCTAGTCCAGCTAAGGCTGTTGCTGTAAAGCATAG ATAAGAGGAAGGTCCCGTGGGAGCCAGAATGGTACCAGGCGTGCTTATGCTTTCCTTCGA GTCCGCACCCAGAGGAGGGCGATGCCGAGACCCAAGGGAGGGCGAACGCTGGCTCCCAAG ATGGCCAAGGTTGCCTCTTTTAGGAACCTCTTCAGGACTGGGGAGCACCATGACTTGGAG TTTGAGCTATTAAAATACTTCTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
| 1-310, gnl|bosTau2|chr26 (29425958-29425649) | |
| 1-310, gnl|canFam2|chr16 (29522153-29521889) | |
| 1-310, gnl|danRer3|chrUn (98547259-98546906) | |
| 1-310, gnl|dasNov1|scaffold_3095 (95809-95468) | |
| 1-310, gnl|echTel1|scaffold_280085 (476-136) | |
| 1-310, gnl|fr1|chrUn (223220349-223220702) | |
| 1-310, gnl|galGal2|chr4 (81171902-81172209) | |
| 1-310, gnl|hg17|chr10 (124211258-124211599) | |
| 1-310, gnl|Hg17|chr10 (124211322-124211631) | |
| 1-310, gnl|mm7|chr7 (127290121-127290462) | |
| 1-310, gnl|Mm7|chr7 (127290185-127290494) | |
| 1-310, gnl|monDom2|scaffold_14 (36742621-36742271) | |
| 1-310, gnl|panTro1|chr8 (126532390-126532731) | |
| 1-310, gnl|rheMac2|chr9 (122078503-122078844) | |
| 1-310, gnl|rn3|chr1 (190407919-190408260) | |
| 1-310, gnl|tetNig1|chrUn_random (9501266-9501619) | |
| 1-310, gnl|xenTro1|scaffold_16819 (818-1178) | |
| 410-615, gnl|bosTau2|chr26 (29395530-29395325) | |
| 410-615, gnl|canFam2|chr28 (35135746-35135991) | |
| 410-615, gnl|danRer3|chrUn (98523360-98523157) | |
| 410-615, gnl|dasNov1|scaffold_3095 (66771-66505) | |
| 410-615, gnl|fr1|chrUn (223223714-223223941) | |
| 410-615, gnl|galGal2|chr6 (30326262-30326511) | |
| 410-615, gnl|hg17|chr10 (124238895-124239140) | |
| 410-615, gnl|Hg17|chr10 (124238928-124239133) | |
| 410-615, gnl|loxAfr1|scaffold_2564 (10434-10161) | |
| 410-615, gnl|mm7|chr7 (127315697-127315951) | |
| 410-615, gnl|Mm7|chr7 (127315723-127315928) | |
| 410-615, gnl|monDom2|scaffold_14 (36708795-36708555) | |
| 410-615, gnl|oryCun1|scaffold_214865 (4186-4442) | |
| 410-615, gnl|panTro1|chr8 (126559839-126560084) | |
| 410-615, gnl|rheMac2|chr9 (122105494-122105739) | |
| 410-615, gnl|rn3|chr1 (190433510-190433764) | |
| 410-615, gnl|tetNig1|chrUn_random (9502920-9503132) | |
| 410-615, gnl|xenTro1|scaffold_190 (1040820-1041061) | |
| 629-799, gnl|bosTau2|chr11 (7759671-7759501) | |
| 629-799, gnl|canFam2|chr17 (51681671-51681508) | |
| 629-799, gnl|danRer3|chr13 (9312255-9312418) | |
| 629-799, gnl|dasNov1|scaffold_54875 (2956-2793) | |
| 629-799, gnl|echTel1|scaffold_201551 (1040-1203) | |
| 629-799, gnl|fr1|chrUn (119565435-119565272) | |
| 629-799, gnl|galGal2|chrUn (122302374-122302537) | |
| 629-799, gnl|hg17|chr2 (74669700-74669863) | |
| 629-799, gnl|Hg17|chr2 (74669707-74669877) | |
| 629-799, gnl|loxAfr1|scaffold_8565 (19209-19372) | |
| 629-799, gnl|mm7|chr6 (83078952-83078789) | |
| 629-799, gnl|Mm7|chr6 (83078943-83078773) | |
| 629-799, gnl|monDom2|scaffold_10 (48132848-48132685) | |
| 629-799, gnl|oryCun1|scaffold_128785 (3249-3086) | |
| 629-799, gnl|panTro1|chr12 (77074109-77074272) | |
| 629-799, gnl|rheMac2|chr13 (74761250-74761413) | |
| 629-799, gnl|rn3|chr4 (117508916-117508753) | |
| 629-799, gnl|tetNig1|chr10 (5684933-5684770) | |
| 629-799, gnl|xenTro1|scaffold_1403 (5344-5507) | |
| 842-969, gnl|bosTau2|chr26 (29373490-29373363) | |
| 842-969, gnl|canFam2|chr28 (35154411-35154550) | |
| 842-969, gnl|danRer3|chrUn (98490761-98490613) | |
| 842-969, gnl|echTel1|scaffold_201551 (3402-3540) | |
| 842-969, gnl|fr1|chrUn (223230513-223230634) | |
| 842-969, gnl|galGal2|chr6 (30340499-30340622) | |
| 842-969, gnl|hg17|chr10 (124258140-124258279) | |
| 842-969, gnl|Hg17|chr10 (124258161-124258294) | |
| 842-969, gnl|loxAfr1|scaffold_10999 (16914-17055) | |
| 842-969, gnl|mm7|chr7 (127335386-127335524) | |
| 842-969, gnl|Mm7|chr7 (127335406-127335538) | |
| 842-969, gnl|monDom2|scaffold_14 (36662965-36662827) | |
| 842-969, gnl|oryCun1|scaffold_199093 (94888-94751) | |
| 842-969, gnl|panTro1|chr8 (126578751-126578890) | |
| 842-969, gnl|rheMac2|chr9 (122124785-122124924) | |
| 842-969, gnl|rn3|chr1 (190454312-190454448) | |
| 842-969, gnl|tetNig1|chrUn_random (9508310-9508438) | |
| 842-969, gnl|xenTro1|scaffold_190 (1043461-1043598) | |
| 990-1111, gnl|bosTau2|chr26 (29370390-29370269) | |
| 990-1111, gnl|Hg17|chr10 (124261450-124261571) | |
| 990-1111, gnl|Mm7|chr7 (127337384-127337505) | |
| 1113-1827, gnl|bosTau2|chr26 (29368847-29368140) | |
| 1113-1827, gnl|Hg17|chr10 (124263698-124264408) | |
| 1113-1827, gnl|Mm7|chr7 (127338714-127339404) |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-310, gnl|bosTau2|chr26 (29425958-29425649) | |
| 1-310, gnl|canFam2|chr16 (29522153-29521889) | |
| 1-310, gnl|danRer3|chrUn (98547259-98546906) | |
| 1-310, gnl|dasNov1|scaffold_3095 (95809-95468) | |
| 1-310, gnl|echTel1|scaffold_280085 (476-136) | |
| 1-310, gnl|fr1|chrUn (223220349-223220702) | |
| 1-310, gnl|galGal2|chr4 (81171902-81172209) | |
| 1-310, gnl|hg17|chr10 (124211258-124211599) | |
| 1-310, gnl|Hg17|chr10 (124211322-124211631) | |
| 1-310, gnl|mm7|chr7 (127290121-127290462) | |
| 1-310, gnl|Mm7|chr7 (127290185-127290494) | |
| 1-310, gnl|monDom2|scaffold_14 (36742621-36742271) | |
| 1-310, gnl|panTro1|chr8 (126532390-126532731) | |
| 1-310, gnl|rheMac2|chr9 (122078503-122078844) | |
| 1-310, gnl|rn3|chr1 (190407919-190408260) | |
| 1-310, gnl|tetNig1|chrUn_random (9501266-9501619) | |
| 1-310, gnl|xenTro1|scaffold_16819 (818-1178) | |
| 410-615, gnl|bosTau2|chr26 (29395530-29395325) | |
| 410-615, gnl|canFam2|chr28 (35135746-35135991) | |
| 410-615, gnl|danRer3|chrUn (98523360-98523157) | |
| 410-615, gnl|dasNov1|scaffold_3095 (66771-66505) | |
| 410-615, gnl|fr1|chrUn (223223714-223223941) | |
| 410-615, gnl|galGal2|chr6 (30326262-30326511) | |
| 410-615, gnl|hg17|chr10 (124238895-124239140) | |
| 410-615, gnl|Hg17|chr10 (124238928-124239133) | |
| 410-615, gnl|loxAfr1|scaffold_2564 (10434-10161) | |
| 410-615, gnl|mm7|chr7 (127315697-127315951) | |
| 410-615, gnl|Mm7|chr7 (127315723-127315928) | |
| 410-615, gnl|monDom2|scaffold_14 (36708795-36708555) | |
| 410-615, gnl|oryCun1|scaffold_214865 (4186-4442) | |
| 410-615, gnl|panTro1|chr8 (126559839-126560084) | |
| 410-615, gnl|rheMac2|chr9 (122105494-122105739) | |
| 410-615, gnl|rn3|chr1 (190433510-190433764) | |
| 410-615, gnl|tetNig1|chrUn_random (9502920-9503132) | |
| 410-615, gnl|xenTro1|scaffold_190 (1040820-1041061) | |
| 629-799, gnl|bosTau2|chr11 (7759671-7759501) | |
| 629-799, gnl|canFam2|chr17 (51681671-51681508) | |
| 629-799, gnl|danRer3|chr13 (9312255-9312418) | |
| 629-799, gnl|dasNov1|scaffold_54875 (2956-2793) | |
| 629-799, gnl|echTel1|scaffold_201551 (1040-1203) | |
| 629-799, gnl|fr1|chrUn (119565435-119565272) | |
| 629-799, gnl|galGal2|chrUn (122302374-122302537) | |
| 629-799, gnl|hg17|chr2 (74669700-74669863) | |
| 629-799, gnl|Hg17|chr2 (74669707-74669877) | |
| 629-799, gnl|loxAfr1|scaffold_8565 (19209-19372) | |
| 629-799, gnl|mm7|chr6 (83078952-83078789) | |
| 629-799, gnl|Mm7|chr6 (83078943-83078773) | |
| 629-799, gnl|monDom2|scaffold_10 (48132848-48132685) | |
| 629-799, gnl|oryCun1|scaffold_128785 (3249-3086) | |
| 629-799, gnl|panTro1|chr12 (77074109-77074272) | |
| 629-799, gnl|rheMac2|chr13 (74761250-74761413) | |
| 629-799, gnl|rn3|chr4 (117508916-117508753) | |
| 629-799, gnl|tetNig1|chr10 (5684933-5684770) | |
| 629-799, gnl|xenTro1|scaffold_1403 (5344-5507) | |
| 842-969, gnl|bosTau2|chr26 (29373490-29373363) | |
| 842-969, gnl|canFam2|chr28 (35154411-35154550) | |
| 842-969, gnl|danRer3|chrUn (98490761-98490613) | |
| 842-969, gnl|echTel1|scaffold_201551 (3402-3540) | |
| 842-969, gnl|fr1|chrUn (223230513-223230634) | |
| 842-969, gnl|galGal2|chr6 (30340499-30340622) | |
| 842-969, gnl|hg17|chr10 (124258140-124258279) | |
| 842-969, gnl|Hg17|chr10 (124258161-124258294) | |
| 842-969, gnl|loxAfr1|scaffold_10999 (16914-17055) | |
| 842-969, gnl|mm7|chr7 (127335386-127335524) | |
| 842-969, gnl|Mm7|chr7 (127335406-127335538) | |
| 842-969, gnl|monDom2|scaffold_14 (36662965-36662827) | |
| 842-969, gnl|oryCun1|scaffold_199093 (94888-94751) | |
| 842-969, gnl|panTro1|chr8 (126578751-126578890) | |
| 842-969, gnl|rheMac2|chr9 (122124785-122124924) | |
| 842-969, gnl|rn3|chr1 (190454312-190454448) | |
| 842-969, gnl|tetNig1|chrUn_random (9508310-9508438) | |
| 842-969, gnl|xenTro1|scaffold_190 (1043461-1043598) | |
| 990-1111, gnl|bosTau2|chr26 (29370390-29370269) | |
| 990-1111, gnl|Hg17|chr10 (124261450-124261571) | |
| 990-1111, gnl|Mm7|chr7 (127337384-127337505) | |
| 1113-1827, gnl|bosTau2|chr26 (29368847-29368140) | |
| 1113-1827, gnl|Hg17|chr10 (124263698-124264408) | |
| 1113-1827, gnl|Mm7|chr7 (127338714-127339404) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| nep (1.4714) | |
| cov (1.32153) | |
| fbs (0.701385) | |
| hyp (0.42851) | |
| amn (0.417711) | |
| nca (0.410621) | |
| elu (0.385356) | |
| eru (0.360144) | |
| jca (0.34188) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| clu (0.239292) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (1.4714) | |
| cov (1.32153) | |
| fbs (0.701385) | |
| hyp (0.42851) | |
| amn (0.417711) | |
| nca (0.410621) | |
| elu (0.385356) | |
| eru (0.360144) | |
| jca (0.34188) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| clu (0.239292) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| jej (0.0989218) |