Non-Coding RNA Search

Ss1.1-Pig4-TMW8059I11.5

Sequence:


               
               AAAATAGGACACCCCGATGTCTCTTTTGCAAGAGCTTTTTCACCGAGGAATACATTTGTT
CAAAAGACTCTAATAAAAGTGTGTGATCGATCTGCACCTGTGGTTTTCACGTGACTTTTT
TTCCTCCCAGTTTTGCATTTGATACCCACTGTCCCATTCCCAAAGTGTCACCCCCAATAC
CATGGCCGGGTTTGGAAAGTATGGGGTGTCAGCCTGGGGAACAGTAACTCCCCCCAGAAA
TGCTCCGGGCGGGATTGAGAGCTGCTGACAATTGGAAGAAGCATGCGTCAACTGGCCGGC
GGGGTAAAAAGCACAGACAAATACAGAAGGGTAGATGAACATATTTTGTCAGAAATGCTT
GAAGTAGAAAATGGAGGAAAAATATCAGGGACAGTTGTTGAATTGCTGTTGAATTCAATA
CCAGCGAACTCCATTTCTCTGTGTCTTTTTTTTTTTTTTTTCTATAACAATTTATAGTGT
AAATGTATTTTGACATAGGAATCATTCTGTATTGAGATTCTTGATATAAAATACTTTTAT
GGAAGCCTGTAGGTGATCCATGGAATTATGATCAGAGTTCTTAAAAGATGTGTTTCCACG
GTGAGTGTTTGCTGAATATTAAATTTGGTTTGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATAGGACACCCCGATGTCTCTTTTGCAAGAGCTTTTTCACCGAGGAATACATTTGTT
CAAAAGACTCTAATAAAAGTGTGTGATCGATCTGCACCTGTGGTTTTCACGTGACTTTTT
TTCCTCCCAGTTTTGCATTTGATACCCACTGTCCCATTCCCAAAGTGTCACCCCCAATAC
CATGGCCGGGTTTGGAAAGTATGGGGTGTCAGCCTGGGGAACAGTAACTCCCCCCAGAAA
TGCTCCGGGCGGGATTGAGAGCTGCTGACAATTGGAAGAAGCATGCGTCAACTGGCCGGC
GGGGTAAAAAGCACAGACAAATACAGAAGGGTAGATGAACATATTTTGTCAGAAATGCTT
GAAGTAGAAAATGGAGGAAAAATATCAGGGACAGTTGTTGAATTGCTGTTGAATTCAATA
CCAGCGAACTCCATTTCTCTGTGTCTTTTTTTTTTTTTTTTCTATAACAATTTATAGTGT
AAATGTATTTTGACATAGGAATCATTCTGTATTGAGATTCTTGATATAAAATACTTTTAT
GGAAGCCTGTAGGTGATCCATGGAATTATGATCAGAGTTCTTAAAAGATGTGTTTCCACG
GTGAGTGTTTGCTGAATATTAAATTTGGTTTGGTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               385-503, - strand, RNAz p=0.947737

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-503, - strand, RNAz p=0.947737

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-635, gnl|bosTau2|chr11 (71462197-71461557)
               

               
               1-635, gnl|Hg17|chr2 (5792021-5792691)
               

               
               1-635, gnl|Mm7|chr12 (25170998-25170286)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr11 (71462197-71461557)
               

               
               1-635, gnl|Hg17|chr2 (5792021-5792691)
               

               
               1-635, gnl|Mm7|chr12 (25170998-25170286)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-635, gnl\|bosTau2\|chr11 (71462197-71461557)
	1-635, gnl\|Hg17\|chr2 (5792021-5792691)
	1-635, gnl\|Mm7\|chr12 (25170998-25170286)