Non-Coding RNA Search

Ss1.1-Pig4-TMW8059I19.3

Sequence:


               
               AGAGGCGGAGCGCGGCGGGCACCTAGAGGAGGTGACCCCAAGGCAGGTACTGAATCACCA
TTAGTCAAGATGGCTTCAGCACCTGAGCCTCCAGCCTTTAAAAAGGAGCTGCCCAAGGAG
AAAGACTTTGGAAACCCAGGGCTCAGAGGGGTCCGCACCACAACCTTATTTCGAGCTGTG
AATCCGGAGCTCTTCATTAAGCCTAACAAACCTGTAATGGCTTTTGGACTGATAACCCTT
TCCCTTTGCGTGGCTTATATTGGTTATCTCCATGCGACACAGGAGAATAAGAAGGACCTC
TATGAAGCTATTGATAGTGAGGGACACAGTTATATGAGGAGGAAAACATCTAAGTGGGAT
TAACAGTGCTGATGCCTGCAGATGAAGCTGTACTGGGGGCTCTGAAATCCTCCCCTGAAG
ATTAAGACCGCACAGTGTCATGTTTCTTGTTCTAAAAGGTGCTACAGAGGAAGAAGGATA
GCAGTTGCAGCCAGACCACAATAGTGAATGTTGTCCTTTCAAAACTGCAGCCATTACCTC
ATTCTTTTTCCATGGAAAGAGCTTCTCAATATTTTTCTTCTATTAAATCCTCTTATAAAA
GTGCCATGAGAATGGAAGTTATTTTTGTTCTACATAATAAAAATACCAGTGCTCTTAAAA
TTGCATAGCATTTTTAATATTTTAAGGTGAATTTTGTATATACAACTGTTGTGATGGTTA
AGTTTATTTTGCTACTTGCAAAGGCAGTGTTCATTTTCTGCTTGGCACAGAACCTATGTT
TGTGAAGAAAACAAAAACTAAATTATTGTAAAGCCTGCAGTTTTTATAGAGTCACAGATG
GGTCATGTATTTCAGTTTTCCATTTCCGCTAATTTTGGTCCAGAATTTTATTTAATTGAA
AAGGTACTCCCACTGAACTACTAAAATCAATATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGCGGAGCGCGGCGGGCACCTAGAGGAGGTGACCCCAAGGCAGGTACTGAATCACCA
TTAGTCAAGATGGCTTCAGCACCTGAGCCTCCAGCCTTTAAAAAGGAGCTGCCCAAGGAG
AAAGACTTTGGAAACCCAGGGCTCAGAGGGGTCCGCACCACAACCTTATTTCGAGCTGTG
AATCCGGAGCTCTTCATTAAGCCTAACAAACCTGTAATGGCTTTTGGACTGATAACCCTT
TCCCTTTGCGTGGCTTATATTGGTTATCTCCATGCGACACAGGAGAATAAGAAGGACCTC
TATGAAGCTATTGATAGTGAGGGACACAGTTATATGAGGAGGAAAACATCTAAGTGGGAT
TAACAGTGCTGATGCCTGCAGATGAAGCTGTACTGGGGGCTCTGAAATCCTCCCCTGAAG
ATTAAGACCGCACAGTGTCATGTTTCTTGTTCTAAAAGGTGCTACAGAGGAAGAAGGATA
GCAGTTGCAGCCAGACCACAATAGTGAATGTTGTCCTTTCAAAACTGCAGCCATTACCTC
ATTCTTTTTCCATGGAAAGAGCTTCTCAATATTTTTCTTCTATTAAATCCTCTTATAAAA
GTGCCATGAGAATGGAAGTTATTTTTGTTCTACATAATAAAAATACCAGTGCTCTTAAAA
TTGCATAGCATTTTTAATATTTTAAGGTGAATTTTGTATATACAACTGTTGTGATGGTTA
AGTTTATTTTGCTACTTGCAAAGGCAGTGTTCATTTTCTGCTTGGCACAGAACCTATGTT
TGTGAAGAAAACAAAAACTAAATTATTGTAAAGCCTGCAGTTTTTATAGAGTCACAGATG
GGTCATGTATTTCAGTTTTCCATTTCCGCTAATTTTGGTCCAGAATTTTATTTAATTGAA
AAGGTACTCCCACTGAACTACTAAAATCAATATTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842889|ref|XP_612498.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842889|ref|XP_612498.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               45-204, gnl|bosTau2|chr9 (34895733-34895574)
               

               
               45-204, gnl|Hg17|chr6 (88103444-88103603)
               

               
               45-204, gnl|Mm7|chr4 (34910095-34909937)
               


               
               205-936, gnl|bosTau2|chr9 (34893482-34892746)
               

               
               205-936, gnl|Hg17|chr6 (88106553-88107343)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-204, gnl|bosTau2|chr9 (34895733-34895574)
               

               
               45-204, gnl|Hg17|chr6 (88103444-88103603)
               

               
               45-204, gnl|Mm7|chr4 (34910095-34909937)
               


               
               205-936, gnl|bosTau2|chr9 (34893482-34892746)
               

               
               205-936, gnl|Hg17|chr6 (88106553-88107343)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	45-204, gnl\|bosTau2\|chr9 (34895733-34895574)
	45-204, gnl\|Hg17\|chr6 (88103444-88103603)
	45-204, gnl\|Mm7\|chr4 (34910095-34909937)

	205-936, gnl\|bosTau2\|chr9 (34893482-34892746)
	205-936, gnl\|Hg17\|chr6 (88106553-88107343)

	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	eje (0.197668)
	ldo (0.194005)
	nep (0.183925)
	nje (0.16592)
	nco (0.161734)
	tbr (0.154178)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	eep (0.122564)
	ebs (0.118301)