Ss1.1-Pig4-TMW8059I23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCCTTTTGCCACTGCAGTGGCTGAATTAGACTTGAAGGATATACAAGATGCAAACACA ATTTTTAGAGGAAATTCCTTGGCTACCCGATGTCTGGATGAGATGATGAAAATAGTGGGA GGGCACTACCTGAAAGTAACATTAAAACCTATTCTAGATGAGATATGTGAATCCTCAAAA TCCTGTGAAATTGATCCTATTAAATTGAAAGAGGGAGATAATGTAGAAAATAATAAGGAG AATCTGCGCTACTATGTAGACAAGTTATTTAGTACAATTGTAAAGTCAAGTATGAGCTGC CCCACTGTAATGTGTGATATCTTTTATTCTCTGAGACAAATGGCTACTCAAAGATTTCCT AATGACCCTCATGTTCAGTATTCTGCAGTGAGCAGCTTTGTATTTCTTCGTTTCTTTGCT GTAGCAGTAGTATCACCTCATACTTTTCATTTGCGACCTCATCATCCAGATCCACAGACA ATTAGAACATTAACTCTCATCTCAAAAACCATTCAAACTTTGGGAAGCTGGGGGAGTCTG TCCAAAAGCAAGTCAAGTTTCAAAGAGACATTCATGTGTGAATTTTTCAAAATGTTTCAA GAGGAAGGATATATCATGGCAGTTAAAAAGTTCTTGGATGAAATTTCATCTACTGAAACT AAAGAGTCCAGTGGTACAAGTGAGCCTGTGCACCTGAAAGAAGGTGAGATGTATAAAAGA GCTCAGGGAAGAACTCGGATTGGAAAAAAGAATTTCAAGAAACGGTGGTTCTGCTTAACA AGCAGAGAGCTCACCTACCACAAGCAGCCAGGCAAAGATGCAATTTACACCATTCCAGTG AAAAACATTCTTGCCGTGGAAAAACTGGAAGAGAGCTCTTTCAATAAGAAAAATATGTTC CAAGTGATACATACGGAGAAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCCTTTTGCCACTGCAGTGGCTGAATTAGACTTGAAGGATATACAAGATGCAAACACA ATTTTTAGAGGAAATTCCTTGGCTACCCGATGTCTGGATGAGATGATGAAAATAGTGGGA GGGCACTACCTGAAAGTAACATTAAAACCTATTCTAGATGAGATATGTGAATCCTCAAAA TCCTGTGAAATTGATCCTATTAAATTGAAAGAGGGAGATAATGTAGAAAATAATAAGGAG AATCTGCGCTACTATGTAGACAAGTTATTTAGTACAATTGTAAAGTCAAGTATGAGCTGC CCCACTGTAATGTGTGATATCTTTTATTCTCTGAGACAAATGGCTACTCAAAGATTTCCT AATGACCCTCATGTTCAGTATTCTGCAGTGAGCAGCTTTGTATTTCTTCGTTTCTTTGCT GTAGCAGTAGTATCACCTCATACTTTTCATTTGCGACCTCATCATCCAGATCCACAGACA ATTAGAACATTAACTCTCATCTCAAAAACCATTCAAACTTTGGGAAGCTGGGGGAGTCTG TCCAAAAGCAAGTCAAGTTTCAAAGAGACATTCATGTGTGAATTTTTCAAAATGTTTCAA GAGGAAGGATATATCATGGCAGTTAAAAAGTTCTTGGATGAAATTTCATCTACTGAAACT AAAGAGTCCAGTGGTACAAGTGAGCCTGTGCACCTGAAAGAAGGTGAGATGTATAAAAGA GCTCAGGGAAGAACTCGGATTGGAAAAAAGAATTTCAAGAAACGGTGGTTCTGCTTAACA AGCAGAGAGCTCACCTACCACAAGCAGCCAGGCAAAGATGCAATTTACACCATTCCAGTG AAAAACATTCTTGCCGTGGAAAAACTGGAAGAGAGCTCTTTCAATAAGAAAAATATGTTC CAAGTGATACATACGGAGAAACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 704-812, + strand, RNAz p=0.752562 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 704-812, + strand, RNAz p=0.752562 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 48-165, gnl|bosTau2|chr1 (79520641-79520524) | |
| 48-165, gnl|canFam2|chr23 (40530123-40530286) | |
| 48-165, gnl|danRer3|chrNA (194403513-194403356) | |
| 48-165, gnl|dasNov1|scaffold_3933 (12037-12200) | |
| 48-165, gnl|echTel1|scaffold_304299 (3044-3201) | |
| 48-165, gnl|fr1|chrUn (216040440-216040321) | |
| 48-165, gnl|galGal2|chr9 (3418994-3418835) | |
| 48-165, gnl|hg17|chr3 (142774111-142774267) | |
| 48-165, gnl|Hg17|chr3 (142774149-142774266) | |
| 48-165, gnl|loxAfr1|scaffold_11908 (44183-44020) | |
| 48-165, gnl|mm7|chr9 (96211494-96211332) | |
| 48-165, gnl|Mm7|chr9 (96211448-96211331) | |
| 48-165, gnl|monDom2|scaffold_28 (12195675-12195839) | |
| 48-165, gnl|oryCun1|scaffold_177549 (12834-12996) | |
| 48-165, gnl|panTro1|chr2 (145312547-145312703) | |
| 48-165, gnl|rheMac2|chr2 (146274447-146274291) | |
| 48-165, gnl|rn3|chr8 (101683331-101683163) | |
| 48-165, gnl|tetNig1|chr5 (8244318-8244459) | |
| 48-165, gnl|xenTro1|scaffold_108 (207522-207373) | |
| 236-361, gnl|bosTau2|chr1 (79519523-79519398) | |
| 236-361, gnl|Hg17|chr3 (142775482-142775607) | |
| 236-361, gnl|Mm7|chr9 (96210132-96210007) | |
| 362-469, gnl|bosTau2|chr1 (79516595-79516488) | |
| 362-469, gnl|canFam2|chr23 (40534443-40534600) | |
| 362-469, gnl|danRer3|chrNA (194401800-194401673) | |
| 362-469, gnl|dasNov1|scaffold_148826 (1947-2078) | |
| 362-469, gnl|echTel1|scaffold_304299 (7441-7597) | |
| 362-469, gnl|fr1|chrUn (216039694-216039568) | |
| 362-469, gnl|galGal2|chr9 (3416336-3416184) | |
| 362-469, gnl|hg17|chr3 (142778527-142778685) | |
| 362-469, gnl|Hg17|chr3 (142778540-142778647) | |
| 362-469, gnl|loxAfr1|scaffold_11908 (40287-40129) | |
| 362-469, gnl|mm7|chr9 (96207780-96207622) | |
| 362-469, gnl|Mm7|chr9 (96207765-96207658) | |
| 362-469, gnl|monDom2|scaffold_28 (12200999-12201155) | |
| 362-469, gnl|oryCun1|scaffold_177549 (17682-17836) | |
| 362-469, gnl|panTro1|chr2 (145316967-145317125) | |
| 362-469, gnl|rheMac2|chr2 (146270098-146269940) | |
| 362-469, gnl|rn3|chr8 (101677335-101677177) | |
| 362-469, gnl|tetNig1|chr5 (8244973-8245098) | |
| 362-469, gnl|xenTro1|scaffold_108 (200777-200621) | |
| 704-812, gnl|bosTau2|chr1 (79507408-79507300) | |
| 704-812, gnl|Hg17|chr3 (142788185-142788293) | |
| 704-812, gnl|Mm7|chr9 (96194053-96193945) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-165, gnl|bosTau2|chr1 (79520641-79520524) | |
| 48-165, gnl|canFam2|chr23 (40530123-40530286) | |
| 48-165, gnl|danRer3|chrNA (194403513-194403356) | |
| 48-165, gnl|dasNov1|scaffold_3933 (12037-12200) | |
| 48-165, gnl|echTel1|scaffold_304299 (3044-3201) | |
| 48-165, gnl|fr1|chrUn (216040440-216040321) | |
| 48-165, gnl|galGal2|chr9 (3418994-3418835) | |
| 48-165, gnl|hg17|chr3 (142774111-142774267) | |
| 48-165, gnl|Hg17|chr3 (142774149-142774266) | |
| 48-165, gnl|loxAfr1|scaffold_11908 (44183-44020) | |
| 48-165, gnl|mm7|chr9 (96211494-96211332) | |
| 48-165, gnl|Mm7|chr9 (96211448-96211331) | |
| 48-165, gnl|monDom2|scaffold_28 (12195675-12195839) | |
| 48-165, gnl|oryCun1|scaffold_177549 (12834-12996) | |
| 48-165, gnl|panTro1|chr2 (145312547-145312703) | |
| 48-165, gnl|rheMac2|chr2 (146274447-146274291) | |
| 48-165, gnl|rn3|chr8 (101683331-101683163) | |
| 48-165, gnl|tetNig1|chr5 (8244318-8244459) | |
| 48-165, gnl|xenTro1|scaffold_108 (207522-207373) | |
| 236-361, gnl|bosTau2|chr1 (79519523-79519398) | |
| 236-361, gnl|Hg17|chr3 (142775482-142775607) | |
| 236-361, gnl|Mm7|chr9 (96210132-96210007) | |
| 362-469, gnl|bosTau2|chr1 (79516595-79516488) | |
| 362-469, gnl|canFam2|chr23 (40534443-40534600) | |
| 362-469, gnl|danRer3|chrNA (194401800-194401673) | |
| 362-469, gnl|dasNov1|scaffold_148826 (1947-2078) | |
| 362-469, gnl|echTel1|scaffold_304299 (7441-7597) | |
| 362-469, gnl|fr1|chrUn (216039694-216039568) | |
| 362-469, gnl|galGal2|chr9 (3416336-3416184) | |
| 362-469, gnl|hg17|chr3 (142778527-142778685) | |
| 362-469, gnl|Hg17|chr3 (142778540-142778647) | |
| 362-469, gnl|loxAfr1|scaffold_11908 (40287-40129) | |
| 362-469, gnl|mm7|chr9 (96207780-96207622) | |
| 362-469, gnl|Mm7|chr9 (96207765-96207658) | |
| 362-469, gnl|monDom2|scaffold_28 (12200999-12201155) | |
| 362-469, gnl|oryCun1|scaffold_177549 (17682-17836) | |
| 362-469, gnl|panTro1|chr2 (145316967-145317125) | |
| 362-469, gnl|rheMac2|chr2 (146270098-146269940) | |
| 362-469, gnl|rn3|chr8 (101677335-101677177) | |
| 362-469, gnl|tetNig1|chr5 (8244973-8245098) | |
| 362-469, gnl|xenTro1|scaffold_108 (200777-200621) | |
| 704-812, gnl|bosTau2|chr1 (79507408-79507300) | |
| 704-812, gnl|Hg17|chr3 (142788185-142788293) | |
| 704-812, gnl|Mm7|chr9 (96194053-96193945) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.286369) | |
| cbl (0.229595) |