Ss1.1-Pig4-TMW8059J03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTAGATCCAGGGTTCTGTCTGATTTTAGGTTCCAGGAACTTCCTCAGAAGCCCTGGTC CCAGAGGGTAATTTTCTGGAGTTTGTTTTGCAGGGATAGCTGGGAGTATGGCCACCCTGC TCCACGATGCGGTAATGAATCCAGTTCCAGTCCATCCACTTCATCACCTACGAGTTCCTG CAGGAGCAGATCAACCCTTACCGGGACTACAACCCGCAGTCCCACATCATCTCAGGCGGG CTGGCCGGGGCCCTGGCTGCAGCCGCCACCACCCCCCTGGACGTCTGTAAGACCCTCCTC AACACTCAGGAGAACATGGCCCTCAGCCTGGCCAATGTGAGCGGCCGGCTGTCGGGCATG GCCAATGCCTTCCGGACAGTGTACCAGCTCAACGGGCTGCCGGGCTACTTCAAAGGCGTG CAGGCCCGGGTCATCTACCAGATGCCCTCCACGGCCATCTCCTGGTCCGTCTATGAGTTC TTCAAGTACTTCCTCACCAAGCACAAGCTGGAGAATCGAACTCTGTACTAAAGGAGCAGG CTGTGGGCAGTGATTCTGGAAGCTCGGGTTGTGCAGAGACTCTCCCAGCCTGCTTCCATT CCCCTTGCCCTGGCACCAAGATTATTGGGGCAGGGTGTGTGTAGGACGGGACTTCTGCTC CCTGACGCCCTAGAGAGAGGAGGGGATGGGACAGCCGCTTCCCTGAGGGCCGTTCGCGGC GACATCCCAGCTGGTGAAAGGTGGGGAAAGATTTTGGAAGGGGATCGAGAAATTGCTTTT TCTCTTCCTCCCCTCCCGAGAGTGTGGTGGCTTCTCTGTTTCTGTGTAGCAGCTTCTCCC CTAGAATCAGATCACACAGGAGGGAAGAAAATGGGCAGTGACCGAAAACATTAAAGGGGA AAAAAACAAAAAAACAAAAACCAATTATGTATATAAAAGTTCCAGTACACAGTATAAAAT AGATGGATAATGTTTATCCTTTATTTTTCTATGTAGAAGTTTCTGGATTTGTGTGTGTGT GCGCGTGCGTGTGCGCCTGTGCGTGTGTACAAATAAGTGTTAACAGCTGGGAATATGAAG CTGTTGTTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTAGATCCAGGGTTCTGTCTGATTTTAGGTTCCAGGAACTTCCTCAGAAGCCCTGGTC CCAGAGGGTAATTTTCTGGAGTTTGTTTTGCAGGGATAGCTGGGAGTATGGCCACCCTGC TCCACGATGCGGTAATGAATCCAGTTCCAGTCCATCCACTTCATCACCTACGAGTTCCTG CAGGAGCAGATCAACCCTTACCGGGACTACAACCCGCAGTCCCACATCATCTCAGGCGGG CTGGCCGGGGCCCTGGCTGCAGCCGCCACCACCCCCCTGGACGTCTGTAAGACCCTCCTC AACACTCAGGAGAACATGGCCCTCAGCCTGGCCAATGTGAGCGGCCGGCTGTCGGGCATG GCCAATGCCTTCCGGACAGTGTACCAGCTCAACGGGCTGCCGGGCTACTTCAAAGGCGTG CAGGCCCGGGTCATCTACCAGATGCCCTCCACGGCCATCTCCTGGTCCGTCTATGAGTTC TTCAAGTACTTCCTCACCAAGCACAAGCTGGAGAATCGAACTCTGTACTAAAGGAGCAGG CTGTGGGCAGTGATTCTGGAAGCTCGGGTTGTGCAGAGACTCTCCCAGCCTGCTTCCATT CCCCTTGCCCTGGCACCAAGATTATTGGGGCAGGGTGTGTGTAGGACGGGACTTCTGCTC CCTGACGCCCTAGAGAGAGGAGGGGATGGGACAGCCGCTTCCCTGAGGGCCGTTCGCGGC GACATCCCAGCTGGTGAAAGGTGGGGAAAGATTTTGGAAGGGGATCGAGAAATTGCTTTT TCTCTTCCTCCCCTCCCGAGAGTGTGGTGGCTTCTCTGTTTCTGTGTAGCAGCTTCTCCC CTAGAATCAGATCACACAGGAGGGAAGAAAATGGGCAGTGACCGAAAACATTAAAGGGGA AAAAAACAAAAAAACAAAAACCAATTATGTATATAAAAGTTCCAGTACACAGTATAAAAT AGATGGATAATGTTTATCCTTTATTTTTCTATGTAGAAGTTTCTGGATTTGTGTGTGTGT GCGCGTGCGTGTGCGCCTGTGCGTGTGTACAAATAAGTGTTAACAGCTGGGAATATGAAG CTGTTGTTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-144, + strand, RNAz p=0.897603 | |
| 158-271, - strand, RNAz p=0.701788 | |
| 383-500, + strand, RNAz p=0.583675 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-144, + strand, RNAz p=0.897603 | |
| 158-271, - strand, RNAz p=0.701788 | |
| 383-500, + strand, RNAz p=0.583675 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AY032628, + | |
| 5' of AY032628, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-144, gnl|bosTau2|chr8 (37320696-37320553) | |
| 1-144, gnl|Hg17|chr8 (23481687-23481830) | |
| 1-144, gnl|Mm7|chr14 (64110272-64110131) | |
| 145-500, gnl|bosTau2|chr26 (11997141-11996789) | |
| 145-500, gnl|canFam2|chr28 (15530301-15530798) | |
| 145-500, gnl|danRer3|chr13 (41226134-41225639) | |
| 145-500, gnl|dasNov1|scaffold_1932 (58745-58246) | |
| 145-500, gnl|echTel1|scaffold_280864 (37677-38174) | |
| 145-500, gnl|fr1|chrUn (156962285-156962792) | |
| 145-500, gnl|galGal2|chr6 (21284413-21283916) | |
| 145-500, gnl|hg17|chr10 (101360595-101361092) | |
| 145-500, gnl|Hg17|chr10 (101360979-101360627) | |
| 145-500, gnl|loxAfr1|scaffold_14721 (16114-15615) | |
| 145-500, gnl|mm7|chr19 (43557998-43558495) | |
| 145-500, gnl|Mm7|chr19 (43558382-43558030) | |
| 145-500, gnl|monDom2|scaffold_14 (22551968-22551471) | |
| 145-500, gnl|oryCun1|scaffold_176051 (57138-56641) | |
| 145-500, gnl|panTro1|chr8 (103111327-103111824) | |
| 145-500, gnl|rheMac2|chr9 (99219546-99220043) | |
| 145-500, gnl|rn3|chr1 (247285391-247284894) | |
| 145-500, gnl|tetNig1|chr17 (5212631-5213141) | |
| 145-500, gnl|xenTro1|scaffold_194 (1735316-1734818) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-144, gnl|bosTau2|chr8 (37320696-37320553) | |
| 1-144, gnl|Hg17|chr8 (23481687-23481830) | |
| 1-144, gnl|Mm7|chr14 (64110272-64110131) | |
| 145-500, gnl|bosTau2|chr26 (11997141-11996789) | |
| 145-500, gnl|canFam2|chr28 (15530301-15530798) | |
| 145-500, gnl|danRer3|chr13 (41226134-41225639) | |
| 145-500, gnl|dasNov1|scaffold_1932 (58745-58246) | |
| 145-500, gnl|echTel1|scaffold_280864 (37677-38174) | |
| 145-500, gnl|fr1|chrUn (156962285-156962792) | |
| 145-500, gnl|galGal2|chr6 (21284413-21283916) | |
| 145-500, gnl|hg17|chr10 (101360595-101361092) | |
| 145-500, gnl|Hg17|chr10 (101360979-101360627) | |
| 145-500, gnl|loxAfr1|scaffold_14721 (16114-15615) | |
| 145-500, gnl|mm7|chr19 (43557998-43558495) | |
| 145-500, gnl|Mm7|chr19 (43558382-43558030) | |
| 145-500, gnl|monDom2|scaffold_14 (22551968-22551471) | |
| 145-500, gnl|oryCun1|scaffold_176051 (57138-56641) | |
| 145-500, gnl|panTro1|chr8 (103111327-103111824) | |
| 145-500, gnl|rheMac2|chr9 (99219546-99220043) | |
| 145-500, gnl|rn3|chr1 (247285391-247284894) | |
| 145-500, gnl|tetNig1|chr17 (5212631-5213141) | |
| 145-500, gnl|xenTro1|scaffold_194 (1735316-1734818) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| col (0.390016) | |
| cje (0.330469) | |
| nbm (0.297974) | |
| cga (0.279096) | |
| che (0.272628) | |
| pgl (0.236967) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| cki (0.165235) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| eep (0.122564) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| cje (0.330469) | |
| nbm (0.297974) | |
| cga (0.279096) | |
| che (0.272628) | |
| pgl (0.236967) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| cki (0.165235) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| eep (0.122564) |