Non-Coding RNA Search

Ss1.1-Pig4-TMW8059J06.5.5

Sequence:


               
               GGAACGGCGGAGGCGGAGGTTTTGAGGGAGTCGTACTCGAAGTAACGTAATGGTCCGCTG
CGTCTCTCGGCGGCGTCTGGGGAGGCTCGGCGTGCGGCCGCAGAGCTCGCGCTCCAGGGA
CAGCGAAGGCGGCCGTGGCCGGCTCTGCTGAGCACCCGGGCCCGCCGCCACACTCAAACC
ATGTTCCTGGTGCGCTTGACTTCCCAGCTGCTCAGGGCTGTTCCCGGGGCAGGCCGCAGT
GGGTCCCCGCGCGTCTCAGAGGTACTGGGCAGGCACGCCTGCAGGCCTCGCTACAGCACG
CAGCCCCCAGGCCCCAGTGGGATTGCCTCTCTTCCTGGCAAGCACGTCCACCCAGAGCTT
GAGGAGATGCTGGTCCCCAGGAAGATGTCCATCAGCCCGCTGGAGAGCTGGCTGACCATT
CGCTACCTCCTGCCCAGACTGGGCGCTGGGACCCCAGGGACTGTGTCTCCAGCTCAGCTC
TATCAATGTCCGCCTAGCCAGGTGGGGGAAGGGGTCAAGCAGGGGGATAAGGAGGTTTGG
GACACACCCCAGATGCAGTGCAAAAACATCCTGAAGATCCGCCGGCGGAAGATGAATCAC
CACAAGTACCGCAAGCTGGTCAAGAGAACCCGGTTCCTGCGGCGGAAAGTCAGGGAAGGG
CGCCTGAGACAGAAGCAGGTCAAGTTTGAGAGAGACTTGAAGCGCATCTGGCAGAAGGCA
GGCTTGAAGGAAGCCCCTGCAGGCTGGCAGACCCCCAAGATCTATCTGAAGAACCAATGA
GTCTGGAGGTGCGCATGGCGGCCCCCCCCCCCCCCGTTACTGCCCACCACCCATTGTAAT
AAAGAACCAGCACACTCTGCTGTCTGCTGGCCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACGGCGGAGGCGGAGGTTTTGAGGGAGTCGTACTCGAAGTAACGTAATGGTCCGCTG
CGTCTCTCGGCGGCGTCTGGGGAGGCTCGGCGTGCGGCCGCAGAGCTCGCGCTCCAGGGA
CAGCGAAGGCGGCCGTGGCCGGCTCTGCTGAGCACCCGGGCCCGCCGCCACACTCAAACC
ATGTTCCTGGTGCGCTTGACTTCCCAGCTGCTCAGGGCTGTTCCCGGGGCAGGCCGCAGT
GGGTCCCCGCGCGTCTCAGAGGTACTGGGCAGGCACGCCTGCAGGCCTCGCTACAGCACG
CAGCCCCCAGGCCCCAGTGGGATTGCCTCTCTTCCTGGCAAGCACGTCCACCCAGAGCTT
GAGGAGATGCTGGTCCCCAGGAAGATGTCCATCAGCCCGCTGGAGAGCTGGCTGACCATT
CGCTACCTCCTGCCCAGACTGGGCGCTGGGACCCCAGGGACTGTGTCTCCAGCTCAGCTC
TATCAATGTCCGCCTAGCCAGGTGGGGGAAGGGGTCAAGCAGGGGGATAAGGAGGTTTGG
GACACACCCCAGATGCAGTGCAAAAACATCCTGAAGATCCGCCGGCGGAAGATGAATCAC
CACAAGTACCGCAAGCTGGTCAAGAGAACCCGGTTCCTGCGGCGGAAAGTCAGGGAAGGG
CGCCTGAGACAGAAGCAGGTCAAGTTTGAGAGAGACTTGAAGCGCATCTGGCAGAAGGCA
GGCTTGAAGGAAGCCCCTGCAGGCTGGCAGACCCCCAAGATCTATCTGAAGAACCAATGA
GTCTGGAGGTGCGCATGGCGGCCCCCCCCCCCCCCGTTACTGCCCACCACCCATTGTAAT
AAAGAACCAGCACACTCTGCTGTCTGCTGGCCTGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18606071|gb|AAH22808.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18606071|gb|AAH22808.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               229-320, - strand, RNAz p=0.748589
               

               
               396-527, - strand, RNAz p=0.539545

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-320, - strand, RNAz p=0.748589
               

               
               396-527, - strand, RNAz p=0.539545

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               229-680, gnl|bosTau2|chr16 (37870008-37870459)
               

               
               229-680, gnl|canFam2|chr5 (59541692-59541238)
               

               
               229-680, gnl|echTel1|scaffold_316300 (43037-43391)
               

               
               229-680, gnl|galGal2|chr21 (2133193-2133610)
               

               
               229-680, gnl|Hg17|chr1 (1349752-1349301)
               

               
               229-680, gnl|hg17|chr5 (17359531-17359969)
               

               
               229-680, gnl|mm7|chr4 (154821884-154822337)
               

               
               229-680, gnl|Mm7|chr4 (154821891-154822341)
               

               
               229-680, gnl|monDom2|scaffold_196 (154817-154356)
               

               
               229-680, gnl|oryCun1|scaffold_203349 (24141-23782)
               

               
               229-680, gnl|panTro1|chr4 (17975911-17976349)
               

               
               229-680, gnl|rheMac2|chr6 (17505783-17506235)
               

               
               229-680, gnl|rn3|chr5 (172695612-172696065)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               229-680, gnl|bosTau2|chr16 (37870008-37870459)
               

               
               229-680, gnl|canFam2|chr5 (59541692-59541238)
               

               
               229-680, gnl|echTel1|scaffold_316300 (43037-43391)
               

               
               229-680, gnl|galGal2|chr21 (2133193-2133610)
               

               
               229-680, gnl|Hg17|chr1 (1349752-1349301)
               

               
               229-680, gnl|hg17|chr5 (17359531-17359969)
               

               
               229-680, gnl|mm7|chr4 (154821884-154822337)
               

               
               229-680, gnl|Mm7|chr4 (154821891-154822341)
               

               
               229-680, gnl|monDom2|scaffold_196 (154817-154356)
               

               
               229-680, gnl|oryCun1|scaffold_203349 (24141-23782)
               

               
               229-680, gnl|panTro1|chr4 (17975911-17976349)
               

               
               229-680, gnl|rheMac2|chr6 (17505783-17506235)
               

               
               229-680, gnl|rn3|chr5 (172695612-172696065)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               eep (0.490256)
               

               
               cov (0.396458)
               

               
               cag (0.302389)
               

               
               ebs (0.236602)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.490256)
               

               
               cov (0.396458)
               

               
               cag (0.302389)
               

               
               ebs (0.236602)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

	229-320, - strand, RNAz p=0.748589
	396-527, - strand, RNAz p=0.539545

	229-680, gnl\|bosTau2\|chr16 (37870008-37870459)
	229-680, gnl\|canFam2\|chr5 (59541692-59541238)
	229-680, gnl\|echTel1\|scaffold_316300 (43037-43391)
	229-680, gnl\|galGal2\|chr21 (2133193-2133610)
	229-680, gnl\|Hg17\|chr1 (1349752-1349301)
	229-680, gnl\|hg17\|chr5 (17359531-17359969)
	229-680, gnl\|mm7\|chr4 (154821884-154822337)
	229-680, gnl\|Mm7\|chr4 (154821891-154822341)
	229-680, gnl\|monDom2\|scaffold_196 (154817-154356)
	229-680, gnl\|oryCun1\|scaffold_203349 (24141-23782)
	229-680, gnl\|panTro1\|chr4 (17975911-17976349)
	229-680, gnl\|rheMac2\|chr6 (17505783-17506235)
	229-680, gnl\|rn3\|chr5 (172695612-172696065)

	eep (0.490256)
	cov (0.396458)
	cag (0.302389)
	ebs (0.236602)
	mas (0.210305)
	nlu (0.191681)
	fty (0.17584)
	fbs (0.175346)
	nje (0.16592)
	csp (0.161186)
	hyp (0.142837)
	lnt (0.142308)
	ese (0.126502)
	cly (0.120642)