Non-Coding RNA Search

Ss1.1-Pig4-TMW8059J19.3

Sequence:


               
               CCTCGCCCACCCCTTGAGAGTCTGTGTTTTCCTTTGCTGTTTTTAATTCAGAGTTGATTT
CGCCCCTTGCTGAGTTTGCTGAGGAGCTAGTGCTCGTTGACGTCGACCAGGCCGAGACCC
TCCTGCCCGGCCGGCCCGACGCAGCGCGGAGAGGGCGCCCGGGCTTCGGGCCGCGCCGAC
GGCCAAGCTCTGGCCCTTGACGTTTGATTGCGACTTCGTTTCCCTTAAATTATATTGACT
GTGTGACCCCGTCAGGTTTATAGTTTGTTTTCACTCTGTGTTGCAGCGGTTTGCAGAGTT
CTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTGGAAAAAAGTTTACTGCCATGCTGGT
GCAGCTATAGAAACTGAAAGCTTGGAATGGTTTATTGCTTATGGTAAAATTTGCCTGATT
TCTTACAGGCAGCATTTGGAAACTTTTTATTATATAGTTGTTTACATACTTATAAGTCTA
TCATTTAAAGACATGTACTGAAACAAATGTTGTATTTGTTTCGTAAGCATCTTCCTGTAA
TCTATTATAAAGTTGAAATTAAATATAGAGAATGTTTTAACAGTTTTTTAACTCGAAATT
TGTCAATCATTTTTAATAGTTCTTTTTTTATAAAAAGAAAAAGGAATTTCAGGACAGGCA
GTAGTCTCTTTTAAAATTTATTCACCAAGAACCATTAACTGCACAGTTGCTGTTAGCTGC
CTGTTCTAAAATAATAGTCTTTTTATTGGAACACAAATAAACTTTTCTGTAATATTTTGT
GGAATAAAGAGACTTTAATTGTTTGACTTGTTTAACTTGGCACTGTTAGTTTTTATTAAT
AAAACGCGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGCCCACCCCTTGAGAGTCTGTGTTTTCCTTTGCTGTTTTTAATTCAGAGTTGATTT
CGCCCCTTGCTGAGTTTGCTGAGGAGCTAGTGCTCGTTGACGTCGACCAGGCCGAGACCC
TCCTGCCCGGCCGGCCCGACGCAGCGCGGAGAGGGCGCCCGGGCTTCGGGCCGCGCCGAC
GGCCAAGCTCTGGCCCTTGACGTTTGATTGCGACTTCGTTTCCCTTAAATTATATTGACT
GTGTGACCCCGTCAGGTTTATAGTTTGTTTTCACTCTGTGTTGCAGCGGTTTGCAGAGTT
CTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTGGAAAAAAGTTTACTGCCATGCTGGT
GCAGCTATAGAAACTGAAAGCTTGGAATGGTTTATTGCTTATGGTAAAATTTGCCTGATT
TCTTACAGGCAGCATTTGGAAACTTTTTATTATATAGTTGTTTACATACTTATAAGTCTA
TCATTTAAAGACATGTACTGAAACAAATGTTGTATTTGTTTCGTAAGCATCTTCCTGTAA
TCTATTATAAAGTTGAAATTAAATATAGAGAATGTTTTAACAGTTTTTTAACTCGAAATT
TGTCAATCATTTTTAATAGTTCTTTTTTTATAAAAAGAAAAAGGAATTTCAGGACAGGCA
GTAGTCTCTTTTAAAATTTATTCACCAAGAACCATTAACTGCACAGTTGCTGTTAGCTGC
CTGTTCTAAAATAATAGTCTTTTTATTGGAACACAAATAAACTTTTCTGTAATATTTTGT
GGAATAAAGAGACTTTAATTGTTTGACTTGTTTAACTTGGCACTGTTAGTTTTTATTAAT
AAAACGCGCATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               367-521, - strand, RNAz p=0.746789
               

               
               642-761, - strand, RNAz p=0.706956

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               367-521, - strand, RNAz p=0.746789
               

               
               642-761, - strand, RNAz p=0.706956

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               9-852, gnl|bosTau2|chr12 (47722134-47721325)
               

               
               9-852, gnl|Hg17|chr13 (113342808-113343775)
               

               
               9-852, gnl|Mm7|chr8 (13351733-13352654)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-852, gnl|bosTau2|chr12 (47722134-47721325)
               

               
               9-852, gnl|Hg17|chr13 (113342808-113343775)
               

               
               9-852, gnl|Mm7|chr8 (13351733-13352654)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               cly (0.120642)

	367-521, - strand, RNAz p=0.746789
	642-761, - strand, RNAz p=0.706956

	9-852, gnl\|bosTau2\|chr12 (47722134-47721325)
	9-852, gnl\|Hg17\|chr13 (113342808-113343775)
	9-852, gnl\|Mm7\|chr8 (13351733-13352654)

	eru (0.240096)
	pgl (0.236967)
	cag (0.151194)
	che (0.136314)
	kid (0.129735)
	cly (0.120642)