Non-Coding RNA Search

Ss1.1-Pig4-TMW8059J20.3

Sequence:


               
               CACATCAGGCCCCAGACCTGGGTGCCAGCCCAGCCCCCCTCGCACACTGAAGCTCAACAA
CTTAGACAACCAGGGCATCCGGGGGCGCAATCGAAATAGCCATAATGGGGCCCTGGCCTC
TGAGCAGATTCCAGCAGTTCACCCTGCTCGAAGTCTCTACCCAGAGAACCTTGTGTCTGC
TTTCCCCCGGGGGCCTTCAGGGAGATATGGGGCAAGTGGTAGAAGTGAAGGTGGTAGGAA
TTCCCGGGTCACCCCCACAACCACAAGTTACTGCAGTAGAACTGTGAAGGCCAAACCCCC
CAAGCAGCAGGGTGCTGGGGATGCAGAGGAGGAAGAGGAGGAGGAGTAACGGTGTCTGCA
GAGAGCTTGCACATTGCTTTCATCTTCTCTGCACAACTTGCTGTGGTGCAGCCCTGCCCT
TTGGGCTCTCTGGGCAGGGGCGATCTTAGAGATTTCAACTTTTTCTAAGTTATGGCCGTT
TTGTGTCTTTTGAGATTGTGCTGTGGAAGTTTGGGGATTTAAGGGAGGGTTAGCAGGGAG
GCTGCTGAGAATGTTTCACCTTTAGCTGCTTCCTTTTGGCAGCACAGAAATGTAAGTTAT
GGCCTCTCAGCCCACCAGGGCTCCATCTTTTGACATACTGTCACCACTGCTTCTTGGTGC
TATGTGGTCCTGGTGGAAAGAGGGAGGGTTCTGGAGACCTGGTACTCACCACTGAGGTGA
TGCTCTTCCCTGTGGGAGCCTAAATTTGGGAACTTAGGGGCAACCTCTCCTGTGTACTGC
CTGTTCCCACTCTAGAATTTGGGCCTCAGGTGTGTGAGGAAGAGCTTTGGTAAAGTGTTC
AGGCCAGTTGCAATATGTATTAGGAACAAGGCTTTTAGAGATGGATTGAGTTACAGGTGA
GTGGACGAGGGGCTTTGTTTTAATCTGCTTCTATGGCATTTGGGATCACTGCCTTCTGTT
TCTGATGGGGAGCACGGCTCCTTTGTCTTCACTGCCTTCTGGAGAAGGTGGGGAGCTCTC
TGTCCTCGCCAGGGCCATGCTGGGCTCTACTGTAATTAGGACTGAGGCCTAAGCTCATGG
CTTGCTCTGAAAACCAAGTATCAGAGCCTGTTTCCCCTGTTTTTATTTTACTATTATTAT
TATTAATATCCTTGTAATAGAAATAAAGTTTGTACTTGGAGTTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATCAGGCCCCAGACCTGGGTGCCAGCCCAGCCCCCCTCGCACACTGAAGCTCAACAA
CTTAGACAACCAGGGCATCCGGGGGCGCAATCGAAATAGCCATAATGGGGCCCTGGCCTC
TGAGCAGATTCCAGCAGTTCACCCTGCTCGAAGTCTCTACCCAGAGAACCTTGTGTCTGC
TTTCCCCCGGGGGCCTTCAGGGAGATATGGGGCAAGTGGTAGAAGTGAAGGTGGTAGGAA
TTCCCGGGTCACCCCCACAACCACAAGTTACTGCAGTAGAACTGTGAAGGCCAAACCCCC
CAAGCAGCAGGGTGCTGGGGATGCAGAGGAGGAAGAGGAGGAGGAGTAACGGTGTCTGCA
GAGAGCTTGCACATTGCTTTCATCTTCTCTGCACAACTTGCTGTGGTGCAGCCCTGCCCT
TTGGGCTCTCTGGGCAGGGGCGATCTTAGAGATTTCAACTTTTTCTAAGTTATGGCCGTT
TTGTGTCTTTTGAGATTGTGCTGTGGAAGTTTGGGGATTTAAGGGAGGGTTAGCAGGGAG
GCTGCTGAGAATGTTTCACCTTTAGCTGCTTCCTTTTGGCAGCACAGAAATGTAAGTTAT
GGCCTCTCAGCCCACCAGGGCTCCATCTTTTGACATACTGTCACCACTGCTTCTTGGTGC
TATGTGGTCCTGGTGGAAAGAGGGAGGGTTCTGGAGACCTGGTACTCACCACTGAGGTGA
TGCTCTTCCCTGTGGGAGCCTAAATTTGGGAACTTAGGGGCAACCTCTCCTGTGTACTGC
CTGTTCCCACTCTAGAATTTGGGCCTCAGGTGTGTGAGGAAGAGCTTTGGTAAAGTGTTC
AGGCCAGTTGCAATATGTATTAGGAACAAGGCTTTTAGAGATGGATTGAGTTACAGGTGA
GTGGACGAGGGGCTTTGTTTTAATCTGCTTCTATGGCATTTGGGATCACTGCCTTCTGTT
TCTGATGGGGAGCACGGCTCCTTTGTCTTCACTGCCTTCTGGAGAAGGTGGGGAGCTCTC
TGTCCTCGCCAGGGCCATGCTGGGCTCTACTGTAATTAGGACTGAGGCCTAAGCTCATGG
CTTGCTCTGAAAACCAAGTATCAGAGCCTGTTTCCCCTGTTTTTATTTTACTATTATTAT
TATTAATATCCTTGTAATAGAAATAAAGTTTGTACTTGGAGTTCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56789510|gb|AAH88344.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56789510|gb|AAH88344.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, + strand, RNAz p=0.943115
               

               
               327-718, - strand, RNAz p=0.998602
               

               
               919-1185, + strand, RNAz p=0.99952

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.943115
               

               
               327-718, - strand, RNAz p=0.998602
               

               
               919-1185, + strand, RNAz p=0.99952

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006700, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006700, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-216, gnl|bosTau2|chr17 (36984726-36984941)
               

               
               1-216, gnl|Hg17|chr12 (111052449-111052664)
               

               
               1-216, gnl|Mm7|chr5 (120607339-120607124)
               


               
               288-1185, gnl|bosTau2|chr17 (36985784-36986663)
               

               
               288-1185, gnl|Hg17|chr12 (111053257-111054128)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr17 (36984726-36984941)
               

               
               1-216, gnl|Hg17|chr12 (111052449-111052664)
               

               
               1-216, gnl|Mm7|chr5 (120607339-120607124)
               


               
               288-1185, gnl|bosTau2|chr17 (36985784-36986663)
               

               
               288-1185, gnl|Hg17|chr12 (111053257-111054128)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-119, + strand, RNAz p=0.943115
	327-718, - strand, RNAz p=0.998602
	919-1185, + strand, RNAz p=0.99952

	1-216, gnl\|bosTau2\|chr17 (36984726-36984941)
	1-216, gnl\|Hg17\|chr12 (111052449-111052664)
	1-216, gnl\|Mm7\|chr5 (120607339-120607124)

	288-1185, gnl\|bosTau2\|chr17 (36985784-36986663)
	288-1185, gnl\|Hg17\|chr12 (111053257-111054128)

	pla (0.267344)
	cbe (0.239234)
	mgp (0.230681)
	cbl (0.229595)
	ldo (0.194005)
	ton (0.1755)
	cut (0.169924)
	cst (0.140036)
	ssp (0.13552)
	nmm (0.132802)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)