Ss1.1-Pig4-TMW8059J21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGAAAGAAGAGTGAAGTGGGGGGGACGCGGCGGCAGCGGCGCTGACAATGAGTTTTCT TGGAGGCTTTTTTGGTCCCATTTGTGAGATCGATGTTGTCCTTAATGATGGAGAAACGAG GAAAATGGCGGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTTTTCTATGA TGGAGAATCTGTTTCAGGAAAGGTAAACCTAGCCTTTAAGCAACCTGGAAAGAGGCTAGA GCACCAAGGAATTAGAATTGAATTTGTAGGTCAAATTGAACTTTTCAATGACAAGAGTAA TACTCACGAATTTGTAAACCTAGTGAAAGAACTAGCCTTACCTGGAGAACTAACTCAGAG CAGAAGTTATGATTTTGAATTTATGCAAGTTGAAAAGCCATATGAATCTTACATCGGTGC CAATGTTCGCTTAAGGTATTTTCTTAAAGTGACAATAGTAAGAAGACTGACAGACTTGGT AAAAGAATATGATCTTATTGTTCATCAGCTTGCTACCTATCCTGATGTTAACAACTCTAT TAAGATGGAAGTGGGCATTGAAGATTGTCTCCACATAGAATTTGAATATAATAAGTCAAA GTATCATTTAAAGGATGTGATTGTTGGAAAAATTTACTTCCTGTTAGTAAGAATAAAAAT CCAACATATGGAGTTACAACTGATTAAAAAAGAGATAACGGGAATTGGACCCAGTACTAC GACAGAAACAGAAACGATCGCTAAATATGAAATAATGGATGGTGCACCAGTAAAAGGTGA ATCAATTCCAATAAGACTGTTTTTAGCGGGATATGACCCAACTCCAACAATGAGAGACGT GAACAAAAAATTTTCAGTAAGGTACTTTTTGAATCTGGTCCTTGTTGATGAGGAAGACAG AAGGTACTTCAAGCAGCAGGAGATCATTTTATGGAGAAAAGCTCCTGAAAAACTGAGGAA ACAGAGAACAAACTTTCACCAGCGATTTGAATCACCAGAATCACAGGCATCTGCTGAGCA GCCTGAAATGTGAACTGAATAGGAGAAAAAAAGAAAAAAACTCCTATATACGTTGAGATT TAAGTTTGGCAAGTTAAAGGTGGTTGCAGCGTGTGAGGGGGGAAAGGCCAAAACTCCATT TGTAATAGTCTTCCTTTATCTTACAGTGCTGAATTTATTTTATGATATAACTAAATGTTA TTCATGTATATACATTAAAAAAAAGTGCTTTCTTTGAAACACTGGAACTTCTTTAAACTG CCTTTTTTTTTTTAACCGTACACTTTGATTTGATGATAAGTACTCACATGCATTAGCATA AAATTAAAGATTTTCATGTGAGTAAGCTAGTATTTGTAATTTTGCTTTCTTCACAATGTT GATTATAAACCCTTTTCTTTTTTCACGCTAATGATTACCTCTGATTCTCTTCATGCAAAA AATTAAATATTTTGTGTTCAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGAAAGAAGAGTGAAGTGGGGGGGACGCGGCGGCAGCGGCGCTGACAATGAGTTTTCT TGGAGGCTTTTTTGGTCCCATTTGTGAGATCGATGTTGTCCTTAATGATGGAGAAACGAG GAAAATGGCGGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTTTTCTATGA TGGAGAATCTGTTTCAGGAAAGGTAAACCTAGCCTTTAAGCAACCTGGAAAGAGGCTAGA GCACCAAGGAATTAGAATTGAATTTGTAGGTCAAATTGAACTTTTCAATGACAAGAGTAA TACTCACGAATTTGTAAACCTAGTGAAAGAACTAGCCTTACCTGGAGAACTAACTCAGAG CAGAAGTTATGATTTTGAATTTATGCAAGTTGAAAAGCCATATGAATCTTACATCGGTGC CAATGTTCGCTTAAGGTATTTTCTTAAAGTGACAATAGTAAGAAGACTGACAGACTTGGT AAAAGAATATGATCTTATTGTTCATCAGCTTGCTACCTATCCTGATGTTAACAACTCTAT TAAGATGGAAGTGGGCATTGAAGATTGTCTCCACATAGAATTTGAATATAATAAGTCAAA GTATCATTTAAAGGATGTGATTGTTGGAAAAATTTACTTCCTGTTAGTAAGAATAAAAAT CCAACATATGGAGTTACAACTGATTAAAAAAGAGATAACGGGAATTGGACCCAGTACTAC GACAGAAACAGAAACGATCGCTAAATATGAAATAATGGATGGTGCACCAGTAAAAGGTGA ATCAATTCCAATAAGACTGTTTTTAGCGGGATATGACCCAACTCCAACAATGAGAGACGT GAACAAAAAATTTTCAGTAAGGTACTTTTTGAATCTGGTCCTTGTTGATGAGGAAGACAG AAGGTACTTCAAGCAGCAGGAGATCATTTTATGGAGAAAAGCTCCTGAAAAACTGAGGAA ACAGAGAACAAACTTTCACCAGCGATTTGAATCACCAGAATCACAGGCATCTGCTGAGCA GCCTGAAATGTGAACTGAATAGGAGAAAAAAAGAAAAAAACTCCTATATACGTTGAGATT TAAGTTTGGCAAGTTAAAGGTGGTTGCAGCGTGTGAGGGGGGAAAGGCCAAAACTCCATT TGTAATAGTCTTCCTTTATCTTACAGTGCTGAATTTATTTTATGATATAACTAAATGTTA TTCATGTATATACATTAAAAAAAAGTGCTTTCTTTGAAACACTGGAACTTCTTTAAACTG CCTTTTTTTTTTTAACCGTACACTTTGATTTGATGATAAGTACTCACATGCATTAGCATA AAATTAAAGATTTTCATGTGAGTAAGCTAGTATTTGTAATTTTGCTTTCTTCACAATGTT GATTATAAACCCTTTTCTTTTTTCACGCTAATGATTACCTCTGATTCTCTTCATGCAAAA AATTAAATATTTTGTGTTCAAATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 103 entry(ies) | More info |
| Aligned organism(s): 103 entry(ies) | Help | Less info |
| 52-207, gnl|bosTau2|chr28 (20366033-20365878) | |
| 52-207, gnl|canFam2|chr4 (23477174-23477021) | |
| 52-207, gnl|canFam2|chr4 (23477011-23477180) | |
| 52-207, gnl|danRer3|chr13 (26668314-26668150) | |
| 52-207, gnl|danRer3|chrUn (154835138-154834983) | |
| 52-207, gnl|dasNov1|scaffold_5908 (39152-39305) | |
| 52-207, gnl|dasNov1|scaffold_5908 (39315-39147) | |
| 52-207, gnl|echTel1|scaffold_309520 (42520-42378) | |
| 52-207, gnl|echTel1|scaffold_321826 (73673-73506) | |
| 52-207, gnl|fr1|chrUn (220535258-220535104) | |
| 52-207, gnl|fr1|chrUn (220535098-220535262) | |
| 52-207, gnl|galGal2|chr6 (10118943-10118789) | |
| 52-207, gnl|galGal2|chr6 (10118779-10118948) | |
| 52-207, gnl|hg17|chr10 (70562650-70562819) | |
| 52-207, gnl|Hg17|chr10 (70562659-70562814) | |
| 52-207, gnl|hg17|chr3 (47977425-47977580) | |
| 52-207, gnl|loxAfr1|scaffold_3223 (97790-97945) | |
| 52-207, gnl|loxAfr1|scaffold_3223 (97955-97786) | |
| 52-207, gnl|mm7|chr10 (61999294-61999447) | |
| 52-207, gnl|mm7|chr10 (61999457-61999277) | |
| 52-207, gnl|Mm7|chr10 (61999446-61999291) | |
| 52-207, gnl|monDom2|scaffold_242 (277852-278007) | |
| 52-207, gnl|monDom2|scaffold_242 (278017-277848) | |
| 52-207, gnl|panTro1|chr2 (49455626-49455781) | |
| 52-207, gnl|panTro1|chr8 (71715802-71715971) | |
| 52-207, gnl|rheMac2|chr2 (88558962-88558811) | |
| 52-207, gnl|rheMac2|chr9 (67898624-67898455) | |
| 52-207, gnl|rn3|chr20 (29745340-29745493) | |
| 52-207, gnl|rn3|chr20 (29745503-29745323) | |
| 52-207, gnl|tetNig1|chr5 (3761244-3761399) | |
| 52-207, gnl|tetNig1|chr5 (3761404-3761240) | |
| 52-207, gnl|xenTro1|scaffold_228 (727840-727995) | |
| 52-207, gnl|xenTro1|scaffold_228 (728005-727841) | |
| 278-439, gnl|bosTau2|chr28 (20358948-20358787) | |
| 278-439, gnl|canFam2|chr4 (23489625-23489465) | |
| 278-439, gnl|canFam2|chr4 (23489457-23489603) | |
| 278-439, gnl|danRer3|chr13 (26667653-26667507) | |
| 278-439, gnl|danRer3|chrUn (154835792-154835643) | |
| 278-439, gnl|dasNov1|scaffold_136028 (3592-3431) | |
| 278-439, gnl|dasNov1|scaffold_136028 (3424-3570) | |
| 278-439, gnl|echTel1|scaffold_285370 (43446-43300) | |
| 278-439, gnl|echTel1|scaffold_309520 (42753-42592) | |
| 278-439, gnl|fr1|chrUn (220537826-220537665) | |
| 278-439, gnl|fr1|chrUn (220537658-220537804) | |
| 278-439, gnl|galGal2|chr6 (10122275-10122115) | |
| 278-439, gnl|galGal2|chr6 (10122112-10122253) | |
| 278-439, gnl|hg17|chr10 (70586762-70586908) | |
| 278-439, gnl|Hg17|chr10 (70586768-70586929) | |
| 278-439, gnl|hg17|chr3 (47977211-47977367) | |
| 278-439, gnl|loxAfr1|scaffold_583 (112406-112545) | |
| 278-439, gnl|loxAfr1|scaffold_583 (112547-112406) | |
| 278-439, gnl|mm7|chr10 (61988636-61988797) | |
| 278-439, gnl|mm7|chr10 (61988804-61988658) | |
| 278-439, gnl|Mm7|chr10 (61988796-61988635) | |
| 278-439, gnl|monDom2|scaffold_242 (270614-270774) | |
| 278-439, gnl|monDom2|scaffold_242 (270782-270636) | |
| 278-439, gnl|oryCun1|scaffold_162617 (17444-17283) | |
| 278-439, gnl|oryCun1|scaffold_162617 (17276-17422) | |
| 278-439, gnl|panTro1|chr2 (49455411-49455567) | |
| 278-439, gnl|panTro1|chr8 (71740047-71740193) | |
| 278-439, gnl|rheMac2|chr2 (88559177-88559021) | |
| 278-439, gnl|rheMac2|chr9 (67869396-67869251) | |
| 278-439, gnl|rn3|chr20 (29735657-29735817) | |
| 278-439, gnl|rn3|chr20 (29735825-29735679) | |
| 278-439, gnl|tetNig1|chr5 (3760338-3760499) | |
| 278-439, gnl|tetNig1|chr5 (3760504-3760360) | |
| 278-439, gnl|xenTro1|scaffold_228 (723986-724144) | |
| 278-439, gnl|xenTro1|scaffold_228 (724147-724006) | |
| 598-708, gnl|bosTau2|chr28 (20355968-20355858) | |
| 598-708, gnl|canFam2|chr4 (23492667-23492796) | |
| 598-708, gnl|danRer3|chr13 (26665072-26664942) | |
| 598-708, gnl|dasNov1|scaffold_5908 (3593-3464) | |
| 598-708, gnl|echTel1|scaffold_206464 (6329-6200) | |
| 598-708, gnl|fr1|chrUn (220538867-220539009) | |
| 598-708, gnl|galGal2|chr6 (10123227-10123338) | |
| 598-708, gnl|hg17|chr10 (70592151-70592280) | |
| 598-708, gnl|Hg17|chr10 (70592165-70592275) | |
| 598-708, gnl|loxAfr1|scaffold_3223 (82845-82715) | |
| 598-708, gnl|mm7|chr10 (61983495-61983366) | |
| 598-708, gnl|Mm7|chr10 (61983479-61983369) | |
| 598-708, gnl|monDom2|scaffold_242 (268089-267960) | |
| 598-708, gnl|oryCun1|scaffold_162617 (20787-20917) | |
| 598-708, gnl|panTro1|chr8 (71745500-71745629) | |
| 598-708, gnl|rheMac2|chr9 (67864022-67863893) | |
| 598-708, gnl|rn3|chr20 (29730517-29730388) | |
| 598-708, gnl|tetNig1|chr5 (3759816-3759674) | |
| 598-708, gnl|xenTro1|scaffold_228 (720632-720503) | |
| 775-920, gnl|bosTau2|chr28 (20351039-20350894) | |
| 775-920, gnl|Hg17|chr10 (70598249-70598394) | |
| 775-920, gnl|Mm7|chr10 (61977806-61977661) | |
| 1346-1464, gnl|bosTau2|chr15 (24657749-24657875) | |
| 1346-1464, gnl|canFam2|chr21 (40348070-40348229) | |
| 1346-1464, gnl|dasNov1|scaffold_120308 (7704-7577) | |
| 1346-1464, gnl|echTel1|scaffold_321826 (47133-47244) | |
| 1346-1464, gnl|hg17|chr11 (14394815-14394974) | |
| 1346-1464, gnl|Hg17|chr11 (14394941-14394817) | |
| 1346-1464, gnl|loxAfr1|scaffold_216 (32476-32337) | |
| 1346-1464, gnl|mm7|chr10 (61975076-61975205) | |
| 1346-1464, gnl|Mm7|chr10 (61975197-61975078) | |
| 1346-1464, gnl|oryCun1|scaffold_174281 (10379-10222) | |
| 1346-1464, gnl|panTro1|chr9 (14603104-14603263) | |
| 1346-1464, gnl|rheMac2|chr14 (57506784-57506625) | |
| 1346-1464, gnl|rn3|chr1 (172293211-172293353) |
| Aligned organism(s): 103 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-207, gnl|bosTau2|chr28 (20366033-20365878) | |
| 52-207, gnl|canFam2|chr4 (23477174-23477021) | |
| 52-207, gnl|canFam2|chr4 (23477011-23477180) | |
| 52-207, gnl|danRer3|chr13 (26668314-26668150) | |
| 52-207, gnl|danRer3|chrUn (154835138-154834983) | |
| 52-207, gnl|dasNov1|scaffold_5908 (39152-39305) | |
| 52-207, gnl|dasNov1|scaffold_5908 (39315-39147) | |
| 52-207, gnl|echTel1|scaffold_309520 (42520-42378) | |
| 52-207, gnl|echTel1|scaffold_321826 (73673-73506) | |
| 52-207, gnl|fr1|chrUn (220535258-220535104) | |
| 52-207, gnl|fr1|chrUn (220535098-220535262) | |
| 52-207, gnl|galGal2|chr6 (10118943-10118789) | |
| 52-207, gnl|galGal2|chr6 (10118779-10118948) | |
| 52-207, gnl|hg17|chr10 (70562650-70562819) | |
| 52-207, gnl|Hg17|chr10 (70562659-70562814) | |
| 52-207, gnl|hg17|chr3 (47977425-47977580) | |
| 52-207, gnl|loxAfr1|scaffold_3223 (97790-97945) | |
| 52-207, gnl|loxAfr1|scaffold_3223 (97955-97786) | |
| 52-207, gnl|mm7|chr10 (61999294-61999447) | |
| 52-207, gnl|mm7|chr10 (61999457-61999277) | |
| 52-207, gnl|Mm7|chr10 (61999446-61999291) | |
| 52-207, gnl|monDom2|scaffold_242 (277852-278007) | |
| 52-207, gnl|monDom2|scaffold_242 (278017-277848) | |
| 52-207, gnl|panTro1|chr2 (49455626-49455781) | |
| 52-207, gnl|panTro1|chr8 (71715802-71715971) | |
| 52-207, gnl|rheMac2|chr2 (88558962-88558811) | |
| 52-207, gnl|rheMac2|chr9 (67898624-67898455) | |
| 52-207, gnl|rn3|chr20 (29745340-29745493) | |
| 52-207, gnl|rn3|chr20 (29745503-29745323) | |
| 52-207, gnl|tetNig1|chr5 (3761244-3761399) | |
| 52-207, gnl|tetNig1|chr5 (3761404-3761240) | |
| 52-207, gnl|xenTro1|scaffold_228 (727840-727995) | |
| 52-207, gnl|xenTro1|scaffold_228 (728005-727841) | |
| 278-439, gnl|bosTau2|chr28 (20358948-20358787) | |
| 278-439, gnl|canFam2|chr4 (23489625-23489465) | |
| 278-439, gnl|canFam2|chr4 (23489457-23489603) | |
| 278-439, gnl|danRer3|chr13 (26667653-26667507) | |
| 278-439, gnl|danRer3|chrUn (154835792-154835643) | |
| 278-439, gnl|dasNov1|scaffold_136028 (3592-3431) | |
| 278-439, gnl|dasNov1|scaffold_136028 (3424-3570) | |
| 278-439, gnl|echTel1|scaffold_285370 (43446-43300) | |
| 278-439, gnl|echTel1|scaffold_309520 (42753-42592) | |
| 278-439, gnl|fr1|chrUn (220537826-220537665) | |
| 278-439, gnl|fr1|chrUn (220537658-220537804) | |
| 278-439, gnl|galGal2|chr6 (10122275-10122115) | |
| 278-439, gnl|galGal2|chr6 (10122112-10122253) | |
| 278-439, gnl|hg17|chr10 (70586762-70586908) | |
| 278-439, gnl|Hg17|chr10 (70586768-70586929) | |
| 278-439, gnl|hg17|chr3 (47977211-47977367) | |
| 278-439, gnl|loxAfr1|scaffold_583 (112406-112545) | |
| 278-439, gnl|loxAfr1|scaffold_583 (112547-112406) | |
| 278-439, gnl|mm7|chr10 (61988636-61988797) | |
| 278-439, gnl|mm7|chr10 (61988804-61988658) | |
| 278-439, gnl|Mm7|chr10 (61988796-61988635) | |
| 278-439, gnl|monDom2|scaffold_242 (270614-270774) | |
| 278-439, gnl|monDom2|scaffold_242 (270782-270636) | |
| 278-439, gnl|oryCun1|scaffold_162617 (17444-17283) | |
| 278-439, gnl|oryCun1|scaffold_162617 (17276-17422) | |
| 278-439, gnl|panTro1|chr2 (49455411-49455567) | |
| 278-439, gnl|panTro1|chr8 (71740047-71740193) | |
| 278-439, gnl|rheMac2|chr2 (88559177-88559021) | |
| 278-439, gnl|rheMac2|chr9 (67869396-67869251) | |
| 278-439, gnl|rn3|chr20 (29735657-29735817) | |
| 278-439, gnl|rn3|chr20 (29735825-29735679) | |
| 278-439, gnl|tetNig1|chr5 (3760338-3760499) | |
| 278-439, gnl|tetNig1|chr5 (3760504-3760360) | |
| 278-439, gnl|xenTro1|scaffold_228 (723986-724144) | |
| 278-439, gnl|xenTro1|scaffold_228 (724147-724006) | |
| 598-708, gnl|bosTau2|chr28 (20355968-20355858) | |
| 598-708, gnl|canFam2|chr4 (23492667-23492796) | |
| 598-708, gnl|danRer3|chr13 (26665072-26664942) | |
| 598-708, gnl|dasNov1|scaffold_5908 (3593-3464) | |
| 598-708, gnl|echTel1|scaffold_206464 (6329-6200) | |
| 598-708, gnl|fr1|chrUn (220538867-220539009) | |
| 598-708, gnl|galGal2|chr6 (10123227-10123338) | |
| 598-708, gnl|hg17|chr10 (70592151-70592280) | |
| 598-708, gnl|Hg17|chr10 (70592165-70592275) | |
| 598-708, gnl|loxAfr1|scaffold_3223 (82845-82715) | |
| 598-708, gnl|mm7|chr10 (61983495-61983366) | |
| 598-708, gnl|Mm7|chr10 (61983479-61983369) | |
| 598-708, gnl|monDom2|scaffold_242 (268089-267960) | |
| 598-708, gnl|oryCun1|scaffold_162617 (20787-20917) | |
| 598-708, gnl|panTro1|chr8 (71745500-71745629) | |
| 598-708, gnl|rheMac2|chr9 (67864022-67863893) | |
| 598-708, gnl|rn3|chr20 (29730517-29730388) | |
| 598-708, gnl|tetNig1|chr5 (3759816-3759674) | |
| 598-708, gnl|xenTro1|scaffold_228 (720632-720503) | |
| 775-920, gnl|bosTau2|chr28 (20351039-20350894) | |
| 775-920, gnl|Hg17|chr10 (70598249-70598394) | |
| 775-920, gnl|Mm7|chr10 (61977806-61977661) | |
| 1346-1464, gnl|bosTau2|chr15 (24657749-24657875) | |
| 1346-1464, gnl|canFam2|chr21 (40348070-40348229) | |
| 1346-1464, gnl|dasNov1|scaffold_120308 (7704-7577) | |
| 1346-1464, gnl|echTel1|scaffold_321826 (47133-47244) | |
| 1346-1464, gnl|hg17|chr11 (14394815-14394974) | |
| 1346-1464, gnl|Hg17|chr11 (14394941-14394817) | |
| 1346-1464, gnl|loxAfr1|scaffold_216 (32476-32337) | |
| 1346-1464, gnl|mm7|chr10 (61975076-61975205) | |
| 1346-1464, gnl|Mm7|chr10 (61975197-61975078) | |
| 1346-1464, gnl|oryCun1|scaffold_174281 (10379-10222) | |
| 1346-1464, gnl|panTro1|chr9 (14603104-14603263) | |
| 1346-1464, gnl|rheMac2|chr14 (57506784-57506625) | |
| 1346-1464, gnl|rn3|chr1 (172293211-172293353) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| tes (0.623441) | |
| cte (0.58548) | |
| mgp (0.461361) | |
| lyg (0.399308) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| rec (0.17307) | |
| spl (0.143184) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| cte (0.58548) | |
| mgp (0.461361) | |
| lyg (0.399308) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| rec (0.17307) | |
| spl (0.143184) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |