Non-Coding RNA Search

Ss1.1-Pig4-TMW8059J22.3

Sequence:


               
               AATATTGGAAAGGAAAACACCTAGTTTTGAAGAGACAGGACCTGATCGATGAGTGGATAG
CCAAAGAGGCCAAAAGATCCAACTCCAATAAAACCATGGATCCAAGCTGTTTAAAATGGA
CCCCGCCCAAGGGCACTTAAAGTGACCCGTTCCTCCGAGCCAGCGAACCCCAGCAGTAGG
AATCCGTACCCTAGGGATCTGTCTGTCATTTCTGTTGCTCTTGTGATTGGCAAGTACAGT
ATCCTTCGGGAAGGCCATCCCCCTCAGGACTGTCCTGGCTCTGACCTTCGTGTACACTGC
AGACGCTGGTTCTGAGGAACTGTTGTTTCGGCCTCAGTGAGGTTGCCCGGATGGGATCTC
TGTGAGACTTGAGTGCAGATCCCTCGTAGCACTGACCCAAGGTGTTCTGTTTTGGTACTG
TACCTGTCCAGTCACTGGTTCTCTCCTCACGTCCTCTGGCCCCCCGAGGTTGTGTCGTGT
CTTCTAAACTTGGTAATAGTGCTTCTTGCCACCCGGTCACCAGACCGCCAACTACGGTTG
CCACCGCCAGCACCTTTCCAGTTACTCCTTCCATGTGTCTTTGGAGGGGCGGGGAAGAGG
TAACACTTCCACGTGTGTATGTGTGTGTGCTGGGAGGGGGTCCCTTCCCTTTGGATTTCA
TCTCACTTTAGGTTTTTTTGCCCCTCCGTTTTTATTGAAAGACCTGTTTTTGATCAGTAT
CAGGCTGACCAGAGCCAAATACCCTGGCAGCCCCTCCCAGGGGTGAGTCTTGGTGACAGC
ACACTGTCCAGATGAGACGGAGAAAAGGACTGAGAGGTGGTGATTCTGCATTTTGATTTG
CGTTCACCTGTGGGCAGCGGGCAGTGTCTTGGTGGAAGGGGATGGAACACTACTTTTGGC
CTCACCAGAACGTGCCCGGCAGTAAATGTTTTCTTCTCTTTACTCCCTGCCCCTTTTTAC
GTTTGCAGGTGCCAAAGTAATGGCCAGTTCTCCCTTTCATGCTGCCTGTTAAACTGGTTA
ATTAGACTGCAGAAACCTTTTCTCCTGTCCCCGGCTGCTCTAGCACACCTCTCCCTGCAC
ATGCATTGCATTGCTCTTGTCTGAACATCCTCGGAGAAGTGATTGAAAGTGACTTCCTTA
TCTCAGACCATGACTCGGCAAGGCAGAGTGGCCACCCCTGCCAAGGTTTGCTTCTCTTTG
CACCAGTGCCTCACCCTCCCTCTAGGACGAAAGTGCTCATGCCCTTCCAAGAACTCCTCC
TCCATTTCCTTTTTGGGACTTGGCACCCTCCCCCCCATTCTCTGGCCTCCTATTTTTGGT
GGTGTTTAAGCGAAGGAAGAGACGCTCCCTCTAATTTCTCTCTAGCCCATTATAACCTGC
TATCTTGGGGCAGCTTTTGATGTCTGACATGTCACCCTCCCCGGCTTGGTCTCCTGCAAC
ACCACGGTCTTCATGCAGAGCCCTCACCACAATCCCGACTCTGGTCATTTGTGCCTTTCT
CTTGTCATCTTTGTACACTACTTATATTCACTGTGGGTTGGGGGGAGCTCATTTTAAGCA
TGTTCGGTGGCAGCTCCCTGCCAGTTTCAGTGTCACTGTTAAAATTTATCCAAAAGCAAC
TTCACTGGGGGTTTTCTTAGGGGTAAAGGCCTTTTACAGACGCTAACCCTTCCCCACATG
TGGTAGAATGTGCTCTTCTGTATCTCCTCCTCAATAAAGCATGTTCTCTGCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATTGGAAAGGAAAACACCTAGTTTTGAAGAGACAGGACCTGATCGATGAGTGGATAG
CCAAAGAGGCCAAAAGATCCAACTCCAATAAAACCATGGATCCAAGCTGTTTAAAATGGA
CCCCGCCCAAGGGCACTTAAAGTGACCCGTTCCTCCGAGCCAGCGAACCCCAGCAGTAGG
AATCCGTACCCTAGGGATCTGTCTGTCATTTCTGTTGCTCTTGTGATTGGCAAGTACAGT
ATCCTTCGGGAAGGCCATCCCCCTCAGGACTGTCCTGGCTCTGACCTTCGTGTACACTGC
AGACGCTGGTTCTGAGGAACTGTTGTTTCGGCCTCAGTGAGGTTGCCCGGATGGGATCTC
TGTGAGACTTGAGTGCAGATCCCTCGTAGCACTGACCCAAGGTGTTCTGTTTTGGTACTG
TACCTGTCCAGTCACTGGTTCTCTCCTCACGTCCTCTGGCCCCCCGAGGTTGTGTCGTGT
CTTCTAAACTTGGTAATAGTGCTTCTTGCCACCCGGTCACCAGACCGCCAACTACGGTTG
CCACCGCCAGCACCTTTCCAGTTACTCCTTCCATGTGTCTTTGGAGGGGCGGGGAAGAGG
TAACACTTCCACGTGTGTATGTGTGTGTGCTGGGAGGGGGTCCCTTCCCTTTGGATTTCA
TCTCACTTTAGGTTTTTTTGCCCCTCCGTTTTTATTGAAAGACCTGTTTTTGATCAGTAT
CAGGCTGACCAGAGCCAAATACCCTGGCAGCCCCTCCCAGGGGTGAGTCTTGGTGACAGC
ACACTGTCCAGATGAGACGGAGAAAAGGACTGAGAGGTGGTGATTCTGCATTTTGATTTG
CGTTCACCTGTGGGCAGCGGGCAGTGTCTTGGTGGAAGGGGATGGAACACTACTTTTGGC
CTCACCAGAACGTGCCCGGCAGTAAATGTTTTCTTCTCTTTACTCCCTGCCCCTTTTTAC
GTTTGCAGGTGCCAAAGTAATGGCCAGTTCTCCCTTTCATGCTGCCTGTTAAACTGGTTA
ATTAGACTGCAGAAACCTTTTCTCCTGTCCCCGGCTGCTCTAGCACACCTCTCCCTGCAC
ATGCATTGCATTGCTCTTGTCTGAACATCCTCGGAGAAGTGATTGAAAGTGACTTCCTTA
TCTCAGACCATGACTCGGCAAGGCAGAGTGGCCACCCCTGCCAAGGTTTGCTTCTCTTTG
CACCAGTGCCTCACCCTCCCTCTAGGACGAAAGTGCTCATGCCCTTCCAAGAACTCCTCC
TCCATTTCCTTTTTGGGACTTGGCACCCTCCCCCCCATTCTCTGGCCTCCTATTTTTGGT
GGTGTTTAAGCGAAGGAAGAGACGCTCCCTCTAATTTCTCTCTAGCCCATTATAACCTGC
TATCTTGGGGCAGCTTTTGATGTCTGACATGTCACCCTCCCCGGCTTGGTCTCCTGCAAC
ACCACGGTCTTCATGCAGAGCCCTCACCACAATCCCGACTCTGGTCATTTGTGCCTTTCT
CTTGTCATCTTTGTACACTACTTATATTCACTGTGGGTTGGGGGGAGCTCATTTTAAGCA
TGTTCGGTGGCAGCTCCCTGCCAGTTTCAGTGTCACTGTTAAAATTTATCCAAAAGCAAC
TTCACTGGGGGTTTTCTTAGGGGTAAAGGCCTTTTACAGACGCTAACCCTTCCCCACATG
TGGTAGAATGTGCTCTTCTGTATCTCCTCCTCAATAAAGCATGTTCTCTGCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               36-154, - strand, RNAz p=0.576206
               

               
               1620-1736, + strand, RNAz p=0.74814

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-154, - strand, RNAz p=0.576206
               

               
               1620-1736, + strand, RNAz p=0.74814

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_007067, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_007067, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               36-1736, gnl|bosTau2|chr19 (29553910-29552242)
               

               
               36-1736, gnl|Hg17|chr17 (45259759-45261458)
               

               
               36-1736, gnl|Mm7|chr11 (95384929-95383296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-1736, gnl|bosTau2|chr19 (29553910-29552242)
               

               
               36-1736, gnl|Hg17|chr17 (45259759-45261458)
               

               
               36-1736, gnl|Mm7|chr11 (95384929-95383296)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	36-154, - strand, RNAz p=0.576206
	1620-1736, + strand, RNAz p=0.74814

	36-1736, gnl\|bosTau2\|chr19 (29553910-29552242)
	36-1736, gnl\|Hg17\|chr17 (45259759-45261458)
	36-1736, gnl\|Mm7\|chr11 (95384929-95383296)

	cly (0.241284)
	cbe (0.239234)
	fcc (0.197785)
	fty (0.17584)
	fbs (0.175346)
	mcp (0.170648)
	csp (0.161186)
	cag (0.151194)
	spl (0.143184)
	lnt (0.142308)
	nmm (0.132802)
	bla (0.124347)
	ebs (0.118301)
	cty (0.10408)
	nbm (0.0993246)