Ss1.1-Pig4-TMW8059K05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCGACAATATAAGAGGTAGCCGATTCAATCCCATATTAGATATGCTGGCAGCTTTTAA GAAAGGAATGGTTGGAGGAGTCAAAGTTCATGTTGATCGTCTACAGACACTCATATCAGG AGCTGTGGTAGAACAACTTGACTTCTTACGAATCAGTGACACAGAAGAGCTTCCAGAATT TAAGAGTTTTGAGGAACTAGAATTTCCCAAACATTCAAAAGTCAAACGACAAAGCAGCAC CTCCAATGCTCCTGAGCGGGAACAGCAGCCACATGTCGCAGTTACTGAATGGAAAAGCAA ACCTACCCATGAAATTCTTCAAAAACTGAATGACTGTAGTTGTCTGGCTAGCCAAGCCAT CCTGCTGGGTATACTGCTCAAAAGAGAGGGCCCCAACTTCATCACAAAGGAAGGTACTGT TTCTGATCACATTGAGAGAGTCTATAGAAGAGCTGGCAGCAAAAAACTTTGGTTGGCGGT ACGCTACGGGGCTGCATTTACCCAGAAATTTTCTTCCTCTATAGCCCCACACATTACTAC TTTTCTGGTACATGGGAAACAGGTAACTCTGGGTGCCTTTGGGCATGAAGAAGAGGTTAT CTCTAATCCTTTGTCTCCAAGAGTGATTAAGAACATCATCTATTACAAGTGTAATACCCA TGATGAGAGGGAGGCGGTCATCCAGCAAGAGCTGGTCATCCACATTGGCTGGATCATCTC CAACAACCCTGAGTTATTCAGTGGCATGCTGAAAATACGAATTGGGTGGATCATCCATGC TATGGAGTATGAGCTACAGATCCGTGGCGGGAATAAGCCAGCCAGAGACTTGTATCAGCT ATCACCTAGTGAAGTGAAACAGCTTCTGTTGGATATTCTCCAGCCTCAACAGAATGGAAG ATGTTGGCTGAACAGGCGTCAGATCGATGGCTCTTTGAATAGAACTCCCACCGGGTTCTA TGACCGAGTGTGGCAGATCCTGGAGCGCACACCCAATGGTATCCTTGTAGCTGGGAAGCA TTTGCCACAGCAACCAACCCTGTCAGATATGACCATGTATGAGATGAATTTCTCTCTCCT TGTTGAGGACATGTTGGGAAATATTGACCAACCAAAGTACAGACAGATTGTCGTGGAGCT TCTAATGGTTGTATCCATTGTGCTGGAAAGAAACCCTGAGCTAGAATTTCAAGACAAAGT GGATCTAGACAAACTGGTGAAAGAAGCATTTCATGAGTTTCAGAAAGATGAGAGTCGACT CAAAGAAGTTGAAAAACAAGATGACATGGCTTCCTTTTACAACACACCCCCCCTGGGAAA AAGAGGAACCTGCAGCTATTTGACAAAGGTCGTGATGAATTTGCTGCTGGAAGGAGACGT CAAGCCAAGCAATGATGACCCATGTCTGGTTAGCTAGTGAGGACGGTGTGAGAGACTCTG TTGAGACCCATTTTCCAGCAGTGTGTTCAGTGTTGTGGTGAAGCTTAATCAAGGCAGCCA TTAGTGTCAGGGCTGATCATGCTGGTGAGGTGGTTGCCATGCCCTTGGCAGAGTTGTTGG ACCTCTCGCATGCCATAGCCACTCTGAAGGCAAGAAATGCTTGTGATCAAGTGAAAAAAA GTTATCATGATTATACCAACTACAACAATAATCTGTGCTGAAAATAGAAATAGTTTATGA ATCGAAAGTTCATCACTGCATGTTTTATGATCATATAACTTATCAAAATGAATCTTTGCA CTCGGGCCTAAACTCCCACCCTACTGCCGATTACATGAATTTTCCAACTAGTCATGCATA CTGGCAATGAAAAATATATTGAAAGAGTGGTGATTTTTTTTTTAAGTGGCATTGCCATGC TAGAAAAAGATATTCATATGCATCATAAAGGCAAAATCAGCCAGCTGATATTTTGATTCT CAAACTGCATTATTAATAATGTTTTAGTATACAGAGCTACTGTACAATTTTTACCTTGTA AACATGGTTGTTGTTTTGTATTTGTGCTAACTATTGGGGTTGGATTAAAATATAGTATAA TCTATACCTGATCATATATTCTTTGTGCTCTTACTAAAAACAGAATTTGTGTTAAGATTC TTCAGAAGTATGGACTGTTAACTTCGTTTGTACTCATAAAAACAAAATTAAGATCCATTA AATTTTATTTCTGAATTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCGACAATATAAGAGGTAGCCGATTCAATCCCATATTAGATATGCTGGCAGCTTTTAA GAAAGGAATGGTTGGAGGAGTCAAAGTTCATGTTGATCGTCTACAGACACTCATATCAGG AGCTGTGGTAGAACAACTTGACTTCTTACGAATCAGTGACACAGAAGAGCTTCCAGAATT TAAGAGTTTTGAGGAACTAGAATTTCCCAAACATTCAAAAGTCAAACGACAAAGCAGCAC CTCCAATGCTCCTGAGCGGGAACAGCAGCCACATGTCGCAGTTACTGAATGGAAAAGCAA ACCTACCCATGAAATTCTTCAAAAACTGAATGACTGTAGTTGTCTGGCTAGCCAAGCCAT CCTGCTGGGTATACTGCTCAAAAGAGAGGGCCCCAACTTCATCACAAAGGAAGGTACTGT TTCTGATCACATTGAGAGAGTCTATAGAAGAGCTGGCAGCAAAAAACTTTGGTTGGCGGT ACGCTACGGGGCTGCATTTACCCAGAAATTTTCTTCCTCTATAGCCCCACACATTACTAC TTTTCTGGTACATGGGAAACAGGTAACTCTGGGTGCCTTTGGGCATGAAGAAGAGGTTAT CTCTAATCCTTTGTCTCCAAGAGTGATTAAGAACATCATCTATTACAAGTGTAATACCCA TGATGAGAGGGAGGCGGTCATCCAGCAAGAGCTGGTCATCCACATTGGCTGGATCATCTC CAACAACCCTGAGTTATTCAGTGGCATGCTGAAAATACGAATTGGGTGGATCATCCATGC TATGGAGTATGAGCTACAGATCCGTGGCGGGAATAAGCCAGCCAGAGACTTGTATCAGCT ATCACCTAGTGAAGTGAAACAGCTTCTGTTGGATATTCTCCAGCCTCAACAGAATGGAAG ATGTTGGCTGAACAGGCGTCAGATCGATGGCTCTTTGAATAGAACTCCCACCGGGTTCTA TGACCGAGTGTGGCAGATCCTGGAGCGCACACCCAATGGTATCCTTGTAGCTGGGAAGCA TTTGCCACAGCAACCAACCCTGTCAGATATGACCATGTATGAGATGAATTTCTCTCTCCT TGTTGAGGACATGTTGGGAAATATTGACCAACCAAAGTACAGACAGATTGTCGTGGAGCT TCTAATGGTTGTATCCATTGTGCTGGAAAGAAACCCTGAGCTAGAATTTCAAGACAAAGT GGATCTAGACAAACTGGTGAAAGAAGCATTTCATGAGTTTCAGAAAGATGAGAGTCGACT CAAAGAAGTTGAAAAACAAGATGACATGGCTTCCTTTTACAACACACCCCCCCTGGGAAA AAGAGGAACCTGCAGCTATTTGACAAAGGTCGTGATGAATTTGCTGCTGGAAGGAGACGT CAAGCCAAGCAATGATGACCCATGTCTGGTTAGCTAGTGAGGACGGTGTGAGAGACTCTG TTGAGACCCATTTTCCAGCAGTGTGTTCAGTGTTGTGGTGAAGCTTAATCAAGGCAGCCA TTAGTGTCAGGGCTGATCATGCTGGTGAGGTGGTTGCCATGCCCTTGGCAGAGTTGTTGG ACCTCTCGCATGCCATAGCCACTCTGAAGGCAAGAAATGCTTGTGATCAAGTGAAAAAAA GTTATCATGATTATACCAACTACAACAATAATCTGTGCTGAAAATAGAAATAGTTTATGA ATCGAAAGTTCATCACTGCATGTTTTATGATCATATAACTTATCAAAATGAATCTTTGCA CTCGGGCCTAAACTCCCACCCTACTGCCGATTACATGAATTTTCCAACTAGTCATGCATA CTGGCAATGAAAAATATATTGAAAGAGTGGTGATTTTTTTTTTAAGTGGCATTGCCATGC TAGAAAAAGATATTCATATGCATCATAAAGGCAAAATCAGCCAGCTGATATTTTGATTCT CAAACTGCATTATTAATAATGTTTTAGTATACAGAGCTACTGTACAATTTTTACCTTGTA AACATGGTTGTTGTTTTGTATTTGTGCTAACTATTGGGGTTGGATTAAAATATAGTATAA TCTATACCTGATCATATATTCTTTGTGCTCTTACTAAAAACAGAATTTGTGTTAAGATTC TTCAGAAGTATGGACTGTTAACTTCGTTTGTACTCATAAAAACAAAATTAAGATCCATTA AATTTTATTTCTGAATTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 651-768, + strand, RNAz p=0.7756 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 651-768, + strand, RNAz p=0.7756 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 169-332, gnl|bosTau2|chr18 (16482533-16482370) | |
| 169-332, gnl|canFam2|chr2 (70183389-70183519) | |
| 169-332, gnl|dasNov1|scaffold_40149 (10598-10729) | |
| 169-332, gnl|echTel1|scaffold_316269 (42681-42534) | |
| 169-332, gnl|Hg17|chr16 (46252069-46252232) | |
| 169-332, gnl|hg17|chr20 (8027346-8027475) | |
| 169-332, gnl|loxAfr1|scaffold_623 (93345-93492) | |
| 169-332, gnl|mm7|chr8 (84612230-84612105) | |
| 169-332, gnl|Mm7|chr8 (84612093-84612256) | |
| 169-332, gnl|panTro1|chr21 (7909727-7909856) | |
| 169-332, gnl|rheMac2|chr10 (41420033-41420158) | |
| 169-332, gnl|rn3|chr19 (22414328-22414458) | |
| 561-768, gnl|bosTau2|chr18 (16474061-16473854) | |
| 561-768, gnl|canFam2|chr2 (70175142-70174892) | |
| 561-768, gnl|danRer3|chrNA (64851117-64851366) | |
| 561-768, gnl|dasNov1|scaffold_40149 (10344-10163) | |
| 561-768, gnl|echTel1|scaffold_306667 (57808-57558) | |
| 561-768, gnl|galGal2|chr11 (7713823-7713587) | |
| 561-768, gnl|hg17|chr16 (46260610-46260860) | |
| 561-768, gnl|Hg17|chr16 (46260625-46260832) | |
| 561-768, gnl|loxAfr1|scaffold_15190 (325-575) | |
| 561-768, gnl|mm7|chr8 (84620015-84620254) | |
| 561-768, gnl|Mm7|chr8 (84620030-84620237) | |
| 561-768, gnl|monDom2|scaffold_35 (11758254-11758507) | |
| 561-768, gnl|oryCun1|scaffold_194618 (51599-51349) | |
| 561-768, gnl|panTro1|chrUn_random (10033622-10033872) | |
| 561-768, gnl|rheMac2|chr20 (45861971-45862221) | |
| 561-768, gnl|rn3|chr19 (22406311-22406071) | |
| 561-768, gnl|tetNig1|chrUn_random (136073857-136073629) | |
| 561-768, gnl|xenTro1|scaffold_555 (701050-701296) | |
| 899-1030, gnl|bosTau2|chr18 (16449745-16449614) | |
| 899-1030, gnl|canFam2|chr2 (70157377-70157508) | |
| 899-1030, gnl|danRer3|chrNA (64853288-64853182) | |
| 899-1030, gnl|dasNov1|scaffold_40149 (9908-10039) | |
| 899-1030, gnl|echTel1|scaffold_316269 (43394-43263) | |
| 899-1030, gnl|Hg17|chr16 (46284788-46284919) | |
| 899-1030, gnl|hg17|chr20 (8026663-8026794) | |
| 899-1030, gnl|loxAfr1|scaffold_623 (92657-92781) | |
| 899-1030, gnl|mm7|chr8 (84640367-84640239) | |
| 899-1030, gnl|Mm7|chr8 (84640238-84640369) | |
| 899-1030, gnl|oryCun1|scaffold_176908 (59726-59598) | |
| 899-1030, gnl|panTro1|chr21 (7909044-7909175) | |
| 899-1030, gnl|rheMac2|chr10 (41419348-41419479) | |
| 899-1030, gnl|rn3|chr13 (25608782-25608910) | |
| 899-1030, gnl|tetNig1|chrUn_random (136072863-136072988) | |
| 1280-2080, gnl|bosTau2|chr18 (16442946-16442152) | |
| 1280-2080, gnl|Hg17|chr16 (46290641-46291438) | |
| 1280-2080, gnl|Mm7|chr8 (84649855-84650629) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 169-332, gnl|bosTau2|chr18 (16482533-16482370) | |
| 169-332, gnl|canFam2|chr2 (70183389-70183519) | |
| 169-332, gnl|dasNov1|scaffold_40149 (10598-10729) | |
| 169-332, gnl|echTel1|scaffold_316269 (42681-42534) | |
| 169-332, gnl|Hg17|chr16 (46252069-46252232) | |
| 169-332, gnl|hg17|chr20 (8027346-8027475) | |
| 169-332, gnl|loxAfr1|scaffold_623 (93345-93492) | |
| 169-332, gnl|mm7|chr8 (84612230-84612105) | |
| 169-332, gnl|Mm7|chr8 (84612093-84612256) | |
| 169-332, gnl|panTro1|chr21 (7909727-7909856) | |
| 169-332, gnl|rheMac2|chr10 (41420033-41420158) | |
| 169-332, gnl|rn3|chr19 (22414328-22414458) | |
| 561-768, gnl|bosTau2|chr18 (16474061-16473854) | |
| 561-768, gnl|canFam2|chr2 (70175142-70174892) | |
| 561-768, gnl|danRer3|chrNA (64851117-64851366) | |
| 561-768, gnl|dasNov1|scaffold_40149 (10344-10163) | |
| 561-768, gnl|echTel1|scaffold_306667 (57808-57558) | |
| 561-768, gnl|galGal2|chr11 (7713823-7713587) | |
| 561-768, gnl|hg17|chr16 (46260610-46260860) | |
| 561-768, gnl|Hg17|chr16 (46260625-46260832) | |
| 561-768, gnl|loxAfr1|scaffold_15190 (325-575) | |
| 561-768, gnl|mm7|chr8 (84620015-84620254) | |
| 561-768, gnl|Mm7|chr8 (84620030-84620237) | |
| 561-768, gnl|monDom2|scaffold_35 (11758254-11758507) | |
| 561-768, gnl|oryCun1|scaffold_194618 (51599-51349) | |
| 561-768, gnl|panTro1|chrUn_random (10033622-10033872) | |
| 561-768, gnl|rheMac2|chr20 (45861971-45862221) | |
| 561-768, gnl|rn3|chr19 (22406311-22406071) | |
| 561-768, gnl|tetNig1|chrUn_random (136073857-136073629) | |
| 561-768, gnl|xenTro1|scaffold_555 (701050-701296) | |
| 899-1030, gnl|bosTau2|chr18 (16449745-16449614) | |
| 899-1030, gnl|canFam2|chr2 (70157377-70157508) | |
| 899-1030, gnl|danRer3|chrNA (64853288-64853182) | |
| 899-1030, gnl|dasNov1|scaffold_40149 (9908-10039) | |
| 899-1030, gnl|echTel1|scaffold_316269 (43394-43263) | |
| 899-1030, gnl|Hg17|chr16 (46284788-46284919) | |
| 899-1030, gnl|hg17|chr20 (8026663-8026794) | |
| 899-1030, gnl|loxAfr1|scaffold_623 (92657-92781) | |
| 899-1030, gnl|mm7|chr8 (84640367-84640239) | |
| 899-1030, gnl|Mm7|chr8 (84640238-84640369) | |
| 899-1030, gnl|oryCun1|scaffold_176908 (59726-59598) | |
| 899-1030, gnl|panTro1|chr21 (7909044-7909175) | |
| 899-1030, gnl|rheMac2|chr10 (41419348-41419479) | |
| 899-1030, gnl|rn3|chr13 (25608782-25608910) | |
| 899-1030, gnl|tetNig1|chrUn_random (136072863-136072988) | |
| 1280-2080, gnl|bosTau2|chr18 (16442946-16442152) | |
| 1280-2080, gnl|Hg17|chr16 (46290641-46291438) | |
| 1280-2080, gnl|Mm7|chr8 (84649855-84650629) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| bfe (2.54758) | |
| ctl (2.14297) | |
| sme (1.83262) | |
| tbr (1.07925) | |
| ldo (0.970026) | |
| ste (0.946458) | |
| isp (0.75188) | |
| mgm (0.721371) | |
| fco (0.628832) | |
| ret (0.514933) | |
| mgp (0.461361) | |
| nms (0.427716) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| spc (0.340097) | |
| fat (0.294855) | |
| spl (0.286369) | |
| sug (0.254582) | |
| aor (0.195274) | |
| sin (0.174948) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (2.54758) | |
| ctl (2.14297) | |
| sme (1.83262) | |
| tbr (1.07925) | |
| ldo (0.970026) | |
| ste (0.946458) | |
| isp (0.75188) | |
| mgm (0.721371) | |
| fco (0.628832) | |
| ret (0.514933) | |
| mgp (0.461361) | |
| nms (0.427716) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| spc (0.340097) | |
| fat (0.294855) | |
| spl (0.286369) | |
| sug (0.254582) | |
| aor (0.195274) | |
| sin (0.174948) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cbl (0.114797) |