Non-Coding RNA Search

Ss1.1-Pig4-TMW8059K17.3.5

Sequence:


               
               AGCAGCAAAGCCCTGCAGAGACAGCACAGCGAGGGAGCCGCCAGCAAGGTTCCTTGCATC
CTGCCCATCATCGAGAACGGGAGGAAGGTGAGCTCAACGCACTACTATCTGCTACCCGAG
AGGCCGCCCTACCTGGACAGGTTCGAGAAGTTTTTCAGGGAGGCAGAAGAAGCGCACGCA
AGCACCCCCATCCAGCCATTGCCTGTTGACTGCAGTGTCATTTCCACCCCGGAGAAGCTG
GACTCGAAGCCGAGGATGGATCTGGGAGGCCACGGCAAGCGCAAACATTTTTCCTACGTG
GTCTCTCCTTAGCTCTGGGGTCCTGGTTCAGCCGAGGTTCCACGGGAGCAAGCGCTTCTC
CAGCAGTTGTGCTGTCTGGTTGAGGTTGGCCGGAAGATGGTTGGGATGTGCAGCGGGAGG
GAGCTAGACTCTCCGTCTTAACAGAGAGAAGGGCCTGTCCAGCGCCAGGAGGTGCTGGCG
TGCTGAGGACCCTAACTGCTGGCGTCCGAGGAAGGTCCCCTCACGTCTGTGGCTGGAAGA
TGCGATGCAGAGCAGGAGGAAGAGGGGACTTCTCTGTGTGCGCACGTTATATACCTATAT
ATCCACTCGTGGTATGATCCTAGGCCCTAGTTGCAAGTTAACCCATTAGTTACTGTCGTA
GAGTAATATATATTCAGGATGATAAGAACTCAAGCTGGAGGATGGTTCCTAACAGACTGA
AAATTGAGCAAACGGAAGAGACTACAGTATTGTTTCCATCAGGATCATAAGACAGATACT
TTTGCCTAGAAAGTTTGAAGATGTCTGGCTCTGAGGCCTGTGATGTTTTGTTTCCTTTGT
TTTTGCAAGCAGGTTTCCACGGAGGGCAGGCCATGCGTTCTTTCCATGACTTCACCAGCC
TCCTTTAAAAAAACGTCCCAAAATCTAAGGTGCTGTACATCCTGCTCTCTGTTTGGTTGA
GGGCAGGGATGGCACCATGTGTTCACCCGTCGGTATCTCACTCACCTCTTGGCAGGTGGA
AAGGTTAGCAGAGTTAGGACATCGCTTTCCCTTAGGGTGCCTGCCTTGCTCCGCACCCCC
CGCCCCCAGCCACTCACCCCTGGCAACGAATGCCAGGCGCCTAGAGCACAGCGGAAAGCA
AACTCTCCGCCAGTGTTGGGAATGTCAGTGGAAGCAATAACAAAACAAGGCGTATGGGAT
GGAGAGTATTTGTGTGGGGATGTGTGTTGTGGTTTTGTTTGTTTGTTTGATTTTCGCCCC
CCCCCCCTTTTTTAGGCTGTATTAATAAACAGATACAACACAAGCTGGCCTTGTGTTGCT
GGTTCCTCTTCAGTATTTCCTGGGGATTGTTTGCTTTTTAAGTAAAACACTTCTGACCAA
TAATGGCCCCATATGTCTTAAGACCAGAGGTCACATCAGCATCTGGTTCGAACACTCTCC
CAGCTGGCTGCTTCCTTCGGCTCCGTGAGACGCAGAGCTCAAGTTCCTGTTTTCACATGC
TTCGCGGTATTTATCTCGTGTAGAGAAGCACAAAAGAGAAGGTGCTCCACTAACAGAGGT
ACATTCTACAATGTTCTTCACAGTTAAACAAGCTGTTTACAGTTGACACTGCTGAGTGAT
GTTATTTGAGCTATTTAAAGCTTATATTTTAGTATGAACTAAATGAAGGTTAAAACATGC
TTTAGAAAAATGCACTGATTACTGCATTCTATGTACAGTATTGGACAAAGGAGTTTATTC
ATTTTTTGTTGCATTATTTTGAATATTGTCTTTTCATTTTAATAAAGTTATAATACTTAT
TTATGACACCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCAAAGCCCTGCAGAGACAGCACAGCGAGGGAGCCGCCAGCAAGGTTCCTTGCATC
CTGCCCATCATCGAGAACGGGAGGAAGGTGAGCTCAACGCACTACTATCTGCTACCCGAG
AGGCCGCCCTACCTGGACAGGTTCGAGAAGTTTTTCAGGGAGGCAGAAGAAGCGCACGCA
AGCACCCCCATCCAGCCATTGCCTGTTGACTGCAGTGTCATTTCCACCCCGGAGAAGCTG
GACTCGAAGCCGAGGATGGATCTGGGAGGCCACGGCAAGCGCAAACATTTTTCCTACGTG
GTCTCTCCTTAGCTCTGGGGTCCTGGTTCAGCCGAGGTTCCACGGGAGCAAGCGCTTCTC
CAGCAGTTGTGCTGTCTGGTTGAGGTTGGCCGGAAGATGGTTGGGATGTGCAGCGGGAGG
GAGCTAGACTCTCCGTCTTAACAGAGAGAAGGGCCTGTCCAGCGCCAGGAGGTGCTGGCG
TGCTGAGGACCCTAACTGCTGGCGTCCGAGGAAGGTCCCCTCACGTCTGTGGCTGGAAGA
TGCGATGCAGAGCAGGAGGAAGAGGGGACTTCTCTGTGTGCGCACGTTATATACCTATAT
ATCCACTCGTGGTATGATCCTAGGCCCTAGTTGCAAGTTAACCCATTAGTTACTGTCGTA
GAGTAATATATATTCAGGATGATAAGAACTCAAGCTGGAGGATGGTTCCTAACAGACTGA
AAATTGAGCAAACGGAAGAGACTACAGTATTGTTTCCATCAGGATCATAAGACAGATACT
TTTGCCTAGAAAGTTTGAAGATGTCTGGCTCTGAGGCCTGTGATGTTTTGTTTCCTTTGT
TTTTGCAAGCAGGTTTCCACGGAGGGCAGGCCATGCGTTCTTTCCATGACTTCACCAGCC
TCCTTTAAAAAAACGTCCCAAAATCTAAGGTGCTGTACATCCTGCTCTCTGTTTGGTTGA
GGGCAGGGATGGCACCATGTGTTCACCCGTCGGTATCTCACTCACCTCTTGGCAGGTGGA
AAGGTTAGCAGAGTTAGGACATCGCTTTCCCTTAGGGTGCCTGCCTTGCTCCGCACCCCC
CGCCCCCAGCCACTCACCCCTGGCAACGAATGCCAGGCGCCTAGAGCACAGCGGAAAGCA
AACTCTCCGCCAGTGTTGGGAATGTCAGTGGAAGCAATAACAAAACAAGGCGTATGGGAT
GGAGAGTATTTGTGTGGGGATGTGTGTTGTGGTTTTGTTTGTTTGTTTGATTTTCGCCCC
CCCCCCCTTTTTTAGGCTGTATTAATAAACAGATACAACACAAGCTGGCCTTGTGTTGCT
GGTTCCTCTTCAGTATTTCCTGGGGATTGTTTGCTTTTTAAGTAAAACACTTCTGACCAA
TAATGGCCCCATATGTCTTAAGACCAGAGGTCACATCAGCATCTGGTTCGAACACTCTCC
CAGCTGGCTGCTTCCTTCGGCTCCGTGAGACGCAGAGCTCAAGTTCCTGTTTTCACATGC
TTCGCGGTATTTATCTCGTGTAGAGAAGCACAAAAGAGAAGGTGCTCCACTAACAGAGGT
ACATTCTACAATGTTCTTCACAGTTAAACAAGCTGTTTACAGTTGACACTGCTGAGTGAT
GTTATTTGAGCTATTTAAAGCTTATATTTTAGTATGAACTAAATGAAGGTTAAAACATGC
TTTAGAAAAATGCACTGATTACTGCATTCTATGTACAGTATTGGACAAAGGAGTTTATTC
ATTTTTTGTTGCATTATTTTGAATATTGTCTTTTCATTTTAATAAAGTTATAATACTTAT
TTATGACACCGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|6807724|emb|CAB70672.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|6807724|emb|CAB70672.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.654146
               

               
               1211-1369, - strand, RNAz p=0.997416

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.654146
               

               
               1211-1369, - strand, RNAz p=0.997416

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-1000, gnl|bosTau2|chr16 (30159609-30158601)
               

               
               1-1000, gnl|Hg17|chr1 (8007847-8006840)
               

               
               1-1000, gnl|Mm7|chr4 (149856733-149857695)
               


               
               1135-1812, gnl|bosTau2|chr16 (30158511-30157849)
               

               
               1135-1812, gnl|Hg17|chr1 (8006703-8006047)
               

               
               1135-1812, gnl|Mm7|chr4 (149857818-149858428)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1000, gnl|bosTau2|chr16 (30159609-30158601)
               

               
               1-1000, gnl|Hg17|chr1 (8007847-8006840)
               

               
               1-1000, gnl|Mm7|chr4 (149856733-149857695)
               


               
               1135-1812, gnl|bosTau2|chr16 (30158511-30157849)
               

               
               1135-1812, gnl|Hg17|chr1 (8006703-8006047)
               

               
               1135-1812, gnl|Mm7|chr4 (149857818-149858428)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               lun (0.752445)
               

               
               pla (0.534688)
               

               
               cbe (0.478469)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.752445)
               

               
               pla (0.534688)
               

               
               cbe (0.478469)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	1-119, - strand, RNAz p=0.654146
	1211-1369, - strand, RNAz p=0.997416

	1-1000, gnl\|bosTau2\|chr16 (30159609-30158601)
	1-1000, gnl\|Hg17\|chr1 (8007847-8006840)
	1-1000, gnl\|Mm7\|chr4 (149856733-149857695)

	1135-1812, gnl\|bosTau2\|chr16 (30158511-30157849)
	1135-1812, gnl\|Hg17\|chr1 (8006703-8006047)
	1135-1812, gnl\|Mm7\|chr4 (149857818-149858428)

	lun (0.752445)
	pla (0.534688)
	cbe (0.478469)
	cmu (0.372787)
	cje (0.330469)
	cki (0.330469)
	cli (0.305623)
	sme (0.305437)
	csk (0.281492)
	ova (0.258264)
	nms (0.213858)
	col (0.195008)
	sto (0.179824)
	gul (0.177588)
	fat (0.147427)
	spl (0.143184)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	ldo (0.0970026)