Ss1.1-Pig4-TMW8059L01.5
|
CGCACCTCACGGCCCTGCCTCTCCCTTCCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAA
ACTTGTCTCTTAGCGTTTACTTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGG
ACACTCTGCTGGATGGCCACTTTGTTCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCC
AGGATCTGCGTTCCTCAGAGCTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACAC
CCCACCTGGATGACTTTGCCGCGGACGACATTGACTCTTATATGATCGCCATGGAGACCA
CTGTGGGCAGTGAGGCTTCCCGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAG
CCCTCTGCAGCCCTGGCCCTGACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAG
TGCCTGGGACACCTCCACCCAAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCC
CCACACACTCTCCCCAGGGCCCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCT
GAGCCCCGAAGTCCGGCGTTGGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTC
CCAGCGCCAGCCGTGGGTGGGGACGGCTCTTCTCCTTGGCAGGTGGTAAAGGTGGGCCCT
GCTGGAGCTGAGCTGGCTGGTCCTGCTACTGTCCCGCGGGCCTTTCCTGGGTATCTGACC
CGCCTGGGTCCTGTCATCTTCCTCCAGCACCGCACTCCCCACGCCCTGCCAATCATGTCT
GTTCCAGGCTTGGTGCTGAGCTGCCACCTGCAGGAGAGGTCCCTAACCACCTCATCCACG
CTTGTGGCCCAGGCTGGGGCCTGCCTTCTCCACACCCACCTCCCTAAGAAAAAAAATCAT
AGTGGGGCTGCTGGCCTCTGCTGATCCACCCCTGCTGCCAATCATGACCTGTCCTGCCCT
CGAATTGTGGGCACACCTCTGAGATGCCCTGTGGCGGACATGTAGTTTTGCTTACTTTCC
TAATACTCTCTGGTGCTGGCCTGGAATCCCAAGGGACCCTATGGACCTGAGCATGTGGCT
GGGGTTTCCCTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCACCTCACGGCCCTGCCTCTCCCTTCCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAA
ACTTGTCTCTTAGCGTTTACTTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGG
ACACTCTGCTGGATGGCCACTTTGTTCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCC
AGGATCTGCGTTCCTCAGAGCTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACAC
CCCACCTGGATGACTTTGCCGCGGACGACATTGACTCTTATATGATCGCCATGGAGACCA
CTGTGGGCAGTGAGGCTTCCCGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAG
CCCTCTGCAGCCCTGGCCCTGACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAG
TGCCTGGGACACCTCCACCCAAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCC
CCACACACTCTCCCCAGGGCCCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCT
GAGCCCCGAAGTCCGGCGTTGGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTC
CCAGCGCCAGCCGTGGGTGGGGACGGCTCTTCTCCTTGGCAGGTGGTAAAGGTGGGCCCT
GCTGGAGCTGAGCTGGCTGGTCCTGCTACTGTCCCGCGGGCCTTTCCTGGGTATCTGACC
CGCCTGGGTCCTGTCATCTTCCTCCAGCACCGCACTCCCCACGCCCTGCCAATCATGTCT
GTTCCAGGCTTGGTGCTGAGCTGCCACCTGCAGGAGAGGTCCCTAACCACCTCATCCACG
CTTGTGGCCCAGGCTGGGGCCTGCCTTCTCCACACCCACCTCCCTAAGAAAAAAAATCAT
AGTGGGGCTGCTGGCCTCTGCTGATCCACCCCTGCTGCCAATCATGACCTGTCCTGCCCT
CGAATTGTGGGCACACCTCTGAGATGCCCTGTGGCGGACATGTAGTTTTGCTTACTTTCC
TAATACTCTCTGGTGCTGGCCTGGAATCCCAAGGGACCCTATGGACCTGAGCATGTGGCT
GGGGTTTCCCTG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
95-235, gnl|bosTau2|chr29 (39771012-39770869) |
|
95-235, gnl|canFam2|chr18 (53093425-53093283) |
|
95-235, gnl|hg17|chr11 (66920273-66920414) |
|
95-235, gnl|Hg17|chr11 (66920307-66920447) |
|
95-235, gnl|loxAfr1|scaffold_219666 (327-186) |
|
95-235, gnl|mm7|chr19 (4092092-4091954) |
|
95-235, gnl|Mm7|chr19 (4092059-4091919) |
|
95-235, gnl|monDom2|scaffold_107 (1707771-1707614) |
|
95-235, gnl|panTro1|chr9_random (30574566-30574425) |
|
95-235, gnl|rheMac2|chr14 (7065452-7065309) |
|
95-235, gnl|rn3|chr1 (206933599-206933464) |
|
95-235, gnl|tetNig1|chr12 (11618723-11618851) |
| |
|
445-1092, gnl|bosTau2|chr29 (39769599-39768975) |
|
445-1092, gnl|Hg17|chr11 (66921509-66922143) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
95-235, gnl|bosTau2|chr29 (39771012-39770869) |
|
95-235, gnl|canFam2|chr18 (53093425-53093283) |
|
95-235, gnl|hg17|chr11 (66920273-66920414) |
|
95-235, gnl|Hg17|chr11 (66920307-66920447) |
|
95-235, gnl|loxAfr1|scaffold_219666 (327-186) |
|
95-235, gnl|mm7|chr19 (4092092-4091954) |
|
95-235, gnl|Mm7|chr19 (4092059-4091919) |
|
95-235, gnl|monDom2|scaffold_107 (1707771-1707614) |
|
95-235, gnl|panTro1|chr9_random (30574566-30574425) |
|
95-235, gnl|rheMac2|chr14 (7065452-7065309) |
|
95-235, gnl|rn3|chr1 (206933599-206933464) |
|
95-235, gnl|tetNig1|chr12 (11618723-11618851) |
| |
|
445-1092, gnl|bosTau2|chr29 (39769599-39768975) |
|
445-1092, gnl|Hg17|chr11 (66921509-66922143) |
|
eje (0.197668) |
|
nco (0.161734) |
|
pty (0.142714) |
|
med (0.116252) |
|
cty (0.10408) |
|
eje (0.197668) |
|
nco (0.161734) |
|
pty (0.142714) |
|
med (0.116252) |
|
cty (0.10408) |
