Non-Coding RNA Search

Ss1.1-Pig4-TMW8059L09.3

Sequence:


               
               GACGGGTCCAGCAAAGAGGAGGAGGAGAGTACTTTCACCAACATTTCTCTTGCAGATGAC
GCAGACCATTCATCAAGAATTTTGTATTCAAGGCCCAAAAGTTTGTCACCGAAGATGATG
AATGCTGACATGGATGCAGTTGATGCTGAAAATCAGGTGGAACTGGAGGAAAAAACACGA
CTTATTAATCAGGTGTTGGAACTCCAACACACACTTGAAGATCTCTCTGCAAGAGTAGAT
GCGGTTAAGGAAGAAAATCTGAAGCTAAAATCAGAAAATCAAGTACTTGGACAATACATA
GAAAACCTCATGTCAGCTTCTAGTGTTTTTCAAACGACTGACACAAAAAGCAAAAGAAAG
TAAGGGATTGATATCCCTTATGTCTTATGGAATTGCTGCTGATCTTTTTTCTTTAAAACT
TAGATTCCAAAAGTTATAATAGTTTTGTTTGTGGCTTCACTGAGTATTTATGAAGATAAT
GTCAGATCTAGGCAAAATTAAGATCCTAACAGAAGACTTCCATGAGTTTGTGTATTATGT
TAGTCTATGAAAATGTGCAAATGTATTGTAGAGACTTTATAATTAGAATTGCATATATTT
ATGAAACTTGAAAATGAATGTTTTATCAAATTTGCTTTTATAGGCTTAGCACTGTCTTTT
ATTATAGGCATAGTTAAAGATATAAGAAAATAACCACCACGTTGTGAGAAAGTGACCAAA
ATCATGTACTGAATGCACAGCTTTCTATACCCTGTCCACCATTGTGTGCCTCTTTTCCAT
TTGCTTTCTTCTTGTTTTCCTTCCCCTAAAGAAAAAACTGCTTTCACATTTATAAAAAGT
AATTCCAAGTGTTAATCATCTAGGAGAGTAACCTGAACTCTCAACTGTTGAAACTTAACC
AAAATAAGACACTTTCTCCATTAGGGCTTATTTGTTATATTTAGTAATAAGATAGAATAT
TTGGTTTCTCTTTAATCAATTGAAAATTGAGGCTATAAAAATGAAGATTTTTCCTTGAAA
CTGAAATGTCAAATTGGGGAAGATGTGTTGTTAAAATTTTTTTTTGCACAAAATAACCCA
CTTGGTTATCTGAAAAGATGAGCTAAACTGTGTTTCTGAAGTAGAAATTTTTGAGGAGAA
ATAGAAATAGGGTGGGAAAAGTACTTGCTAAGTACCTTCTTAACCAACTTCAAATGTTTT
TACTCCAGATTTGTGTTATCTCTGGCACAGGTTAGATTTCCGGGGGAAGGGGGTATATAA
GAAAATGGATTAAGTTTGGCTAACCTTGTGTAAACCATACCTGGAAGAGAATAAAGTTTA
GTCTCAGGTTTATTTGTAGCGCCCAGAGCATCAACTTTGCAAAAATTAAGAGTGTATTAG
TATCAGAATCATGAATAAAATGGGAGTTTGACATGTATACTAATTAATGCTTTCTTAGTA
TTTTATCTCACTACTTCTCCCAGAATTTTCTGTAAACCCAAGTACTAGTTTGCAGAGTTT
TAGTCATTCGACAGGTTTTTTTTTTTTTTAAACTTAGTTTGTAGATTCTATTTGGTAAGG
AAATCAATGTCAAAATAATGTGAAAATGTTAACTAGGAAAAGAGATCCATTAATATAGTT
TATGGTTGTTAAATGTAAGCTAATCATGAAATAATCCTATGTTTGTATTGGTATAAGATT
TGATGAGTTTAGCTGTATGAATAAATAACAGTCCTACTACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGGGTCCAGCAAAGAGGAGGAGGAGAGTACTTTCACCAACATTTCTCTTGCAGATGAC
GCAGACCATTCATCAAGAATTTTGTATTCAAGGCCCAAAAGTTTGTCACCGAAGATGATG
AATGCTGACATGGATGCAGTTGATGCTGAAAATCAGGTGGAACTGGAGGAAAAAACACGA
CTTATTAATCAGGTGTTGGAACTCCAACACACACTTGAAGATCTCTCTGCAAGAGTAGAT
GCGGTTAAGGAAGAAAATCTGAAGCTAAAATCAGAAAATCAAGTACTTGGACAATACATA
GAAAACCTCATGTCAGCTTCTAGTGTTTTTCAAACGACTGACACAAAAAGCAAAAGAAAG
TAAGGGATTGATATCCCTTATGTCTTATGGAATTGCTGCTGATCTTTTTTCTTTAAAACT
TAGATTCCAAAAGTTATAATAGTTTTGTTTGTGGCTTCACTGAGTATTTATGAAGATAAT
GTCAGATCTAGGCAAAATTAAGATCCTAACAGAAGACTTCCATGAGTTTGTGTATTATGT
TAGTCTATGAAAATGTGCAAATGTATTGTAGAGACTTTATAATTAGAATTGCATATATTT
ATGAAACTTGAAAATGAATGTTTTATCAAATTTGCTTTTATAGGCTTAGCACTGTCTTTT
ATTATAGGCATAGTTAAAGATATAAGAAAATAACCACCACGTTGTGAGAAAGTGACCAAA
ATCATGTACTGAATGCACAGCTTTCTATACCCTGTCCACCATTGTGTGCCTCTTTTCCAT
TTGCTTTCTTCTTGTTTTCCTTCCCCTAAAGAAAAAACTGCTTTCACATTTATAAAAAGT
AATTCCAAGTGTTAATCATCTAGGAGAGTAACCTGAACTCTCAACTGTTGAAACTTAACC
AAAATAAGACACTTTCTCCATTAGGGCTTATTTGTTATATTTAGTAATAAGATAGAATAT
TTGGTTTCTCTTTAATCAATTGAAAATTGAGGCTATAAAAATGAAGATTTTTCCTTGAAA
CTGAAATGTCAAATTGGGGAAGATGTGTTGTTAAAATTTTTTTTTGCACAAAATAACCCA
CTTGGTTATCTGAAAAGATGAGCTAAACTGTGTTTCTGAAGTAGAAATTTTTGAGGAGAA
ATAGAAATAGGGTGGGAAAAGTACTTGCTAAGTACCTTCTTAACCAACTTCAAATGTTTT
TACTCCAGATTTGTGTTATCTCTGGCACAGGTTAGATTTCCGGGGGAAGGGGGTATATAA
GAAAATGGATTAAGTTTGGCTAACCTTGTGTAAACCATACCTGGAAGAGAATAAAGTTTA
GTCTCAGGTTTATTTGTAGCGCCCAGAGCATCAACTTTGCAAAAATTAAGAGTGTATTAG
TATCAGAATCATGAATAAAATGGGAGTTTGACATGTATACTAATTAATGCTTTCTTAGTA
TTTTATCTCACTACTTCTCCCAGAATTTTCTGTAAACCCAAGTACTAGTTTGCAGAGTTT
TAGTCATTCGACAGGTTTTTTTTTTTTTTAAACTTAGTTTGTAGATTCTATTTGGTAAGG
AAATCAATGTCAAAATAATGTGAAAATGTTAACTAGGAAAAGAGATCCATTAATATAGTT
TATGGTTGTTAAATGTAAGCTAATCATGAAATAATCCTATGTTTGTATTGGTATAAGATT
TGATGAGTTTAGCTGTATGAATAAATAACAGTCCTACTACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9790207|ref|NP_062682.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9790207|ref|NP_062682.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               298-414, + strand, RNAz p=0.739896
               

               
               1390-1506, - strand, RNAz p=0.760004

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-414, + strand, RNAz p=0.739896
               

               
               1390-1506, - strand, RNAz p=0.760004

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF448857, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF448857, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               219-1723, gnl|bosTau2|chr17 (11734940-11733457)
               

               
               219-1723, gnl|Hg17|chr4 (141659719-141661222)
               

               
               219-1723, gnl|Mm7|chr8 (82014511-82013054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               219-1723, gnl|bosTau2|chr17 (11734940-11733457)
               

               
               219-1723, gnl|Hg17|chr4 (141659719-141661222)
               

               
               219-1723, gnl|Mm7|chr8 (82014511-82013054)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               fco (0.78604)
               

               
               rec (0.519211)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               hyp (0.42851)
               

               
               aor (0.390549)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               rec (0.519211)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               hyp (0.42851)
               

               
               aor (0.390549)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	298-414, + strand, RNAz p=0.739896
	1390-1506, - strand, RNAz p=0.760004

	219-1723, gnl\|bosTau2\|chr17 (11734940-11733457)
	219-1723, gnl\|Hg17\|chr4 (141659719-141661222)
	219-1723, gnl\|Mm7\|chr8 (82014511-82013054)

	fco (0.78604)
	rec (0.519211)
	mgp (0.461361)
	spc (0.453463)
	hyp (0.42851)
	aor (0.390549)
	tbr (0.308356)
	fat (0.294855)
	ute (0.265569)
	ece (0.229305)
	tes (0.207814)
	fcc (0.197785)
	sin (0.174948)
	eye (0.170503)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	ese (0.126502)
	ecc (0.115035)
	cty (0.10408)