Non-Coding RNA Search

Ss1.1-Pig4-TMW8059L12.3

Sequence:


               
               TTTTTTTCATTATAAGGAAAACTCATATAGCATACTTAAAAAAAAGAAAAACCACGCATT
TTTGATGGTATGTAAGATGTTTCCGAGCTGGCAGCTGAAACAGAAGATTGAACTCTCTAA
GCAGCTGATAGAACTTTCATAGACCATGTTAGCTTTCCTTTGGGTTTGAGACACATTGTT
ACCATAGTCCACATTATTTAGGTAAAAGAGATTTAAAATAAAATCTCTTTGGTTACTTTT
AACAAACATATTTCTTTGTCAAGGTATCCAGCTTTTTCCCAAATACCAGTACAATTATTT
AGTTGCTGCCGTTCTCAGAACTGGAAATTATCCACGATGTACTTATCACTTCAGAACACC
ATGATAACATCTATTAGTCTTCATTAGTAAAACAAAAGAGTCCAATCATAACTATTTAAA
ATATTAAATAACATTTCCACAGAATAAATTAGACTTTAATATACTCTACCAATAGAAATA
CCCGTAAATATTTTCTTCTGGACTGTGAACCTAAATAACATGGCTGCCTTTAAGAAACTC
ATAAGTAATGCTTATACTCTACTAATTTATGCTATAAAAGAGGTAAGGATACATCAAATA
TGTATGCAGAAGGTCTCTTAGGTGAGAAAAGAGGCCACTATTGACATTTATTCTGTGCCA
GCCACTGTGTTTGATGATGGAGCTATGAGATTTAAAATCTGCCCTCAAGAAGCTCACTGT
CTACTAGTGGAGCAGAGACCAAGATTCAAAAAAAAAAGTGTTTTAAATAAAATCTGGTAT
GTTCTACAGTCAAGGGATGAGGAGAGATTGTCTTGTTCCATCTGGGAGTTCCAATGGAGG
CTTCATTCATGGGAGATACTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTCATTATAAGGAAAACTCATATAGCATACTTAAAAAAAAGAAAAACCACGCATT
TTTGATGGTATGTAAGATGTTTCCGAGCTGGCAGCTGAAACAGAAGATTGAACTCTCTAA
GCAGCTGATAGAACTTTCATAGACCATGTTAGCTTTCCTTTGGGTTTGAGACACATTGTT
ACCATAGTCCACATTATTTAGGTAAAAGAGATTTAAAATAAAATCTCTTTGGTTACTTTT
AACAAACATATTTCTTTGTCAAGGTATCCAGCTTTTTCCCAAATACCAGTACAATTATTT
AGTTGCTGCCGTTCTCAGAACTGGAAATTATCCACGATGTACTTATCACTTCAGAACACC
ATGATAACATCTATTAGTCTTCATTAGTAAAACAAAAGAGTCCAATCATAACTATTTAAA
ATATTAAATAACATTTCCACAGAATAAATTAGACTTTAATATACTCTACCAATAGAAATA
CCCGTAAATATTTTCTTCTGGACTGTGAACCTAAATAACATGGCTGCCTTTAAGAAACTC
ATAAGTAATGCTTATACTCTACTAATTTATGCTATAAAAGAGGTAAGGATACATCAAATA
TGTATGCAGAAGGTCTCTTAGGTGAGAAAAGAGGCCACTATTGACATTTATTCTGTGCCA
GCCACTGTGTTTGATGATGGAGCTATGAGATTTAAAATCTGCCCTCAAGAAGCTCACTGT
CTACTAGTGGAGCAGAGACCAAGATTCAAAAAAAAAAGTGTTTTAAATAAAATCTGGTAT
GTTCTACAGTCAAGGGATGAGGAGAGATTGTCTTGTTCCATCTGGGAGTTCCAATGGAGG
CTTCATTCATGGGAGATACTGTGG

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-238, gnl|bosTau2|chr2 (42760060-42759823)
               

               
               1-238, gnl|canFam2|chr37 (8854461-8854780)
               

               
               1-238, gnl|dasNov1|scaffold_641 (117312-116964)
               

               
               1-238, gnl|hg17|chr2 (196889075-196889432)
               

               
               1-238, gnl|Hg17|chr2 (196889462-196889231)
               

               
               1-238, gnl|loxAfr1|scaffold_88 (197518-197897)
               

               
               1-238, gnl|mm7|chr1 (54044412-54044775)
               

               
               1-238, gnl|Mm7|chr1 (54044800-54044571)
               

               
               1-238, gnl|monDom2|scaffold_2 (105758887-105759258)
               

               
               1-238, gnl|oryCun1|scaffold_211812 (36448-36815)
               

               
               1-238, gnl|panTro1|chr13 (86807225-86807581)
               

               
               1-238, gnl|rheMac2|chr12 (59837528-59837886)
               

               
               1-238, gnl|rn3|chr9 (52623426-52623775)
               


               
               273-864, gnl|bosTau2|chr2 (42759820-42759243)
               

               
               273-864, gnl|Hg17|chr2 (196889228-196888574)
               

               
               273-864, gnl|Mm7|chr1 (54044568-54043940)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-238, gnl|bosTau2|chr2 (42760060-42759823)
               

               
               1-238, gnl|canFam2|chr37 (8854461-8854780)
               

               
               1-238, gnl|dasNov1|scaffold_641 (117312-116964)
               

               
               1-238, gnl|hg17|chr2 (196889075-196889432)
               

               
               1-238, gnl|Hg17|chr2 (196889462-196889231)
               

               
               1-238, gnl|loxAfr1|scaffold_88 (197518-197897)
               

               
               1-238, gnl|mm7|chr1 (54044412-54044775)
               

               
               1-238, gnl|Mm7|chr1 (54044800-54044571)
               

               
               1-238, gnl|monDom2|scaffold_2 (105758887-105759258)
               

               
               1-238, gnl|oryCun1|scaffold_211812 (36448-36815)
               

               
               1-238, gnl|panTro1|chr13 (86807225-86807581)
               

               
               1-238, gnl|rheMac2|chr12 (59837528-59837886)
               

               
               1-238, gnl|rn3|chr9 (52623426-52623775)
               


               
               273-864, gnl|bosTau2|chr2 (42759820-42759243)
               

               
               273-864, gnl|Hg17|chr2 (196889228-196888574)
               

               
               273-864, gnl|Mm7|chr1 (54044568-54043940)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-238, gnl\|bosTau2\|chr2 (42760060-42759823)
	1-238, gnl\|canFam2\|chr37 (8854461-8854780)
	1-238, gnl\|dasNov1\|scaffold_641 (117312-116964)
	1-238, gnl\|hg17\|chr2 (196889075-196889432)
	1-238, gnl\|Hg17\|chr2 (196889462-196889231)
	1-238, gnl\|loxAfr1\|scaffold_88 (197518-197897)
	1-238, gnl\|mm7\|chr1 (54044412-54044775)
	1-238, gnl\|Mm7\|chr1 (54044800-54044571)
	1-238, gnl\|monDom2\|scaffold_2 (105758887-105759258)
	1-238, gnl\|oryCun1\|scaffold_211812 (36448-36815)
	1-238, gnl\|panTro1\|chr13 (86807225-86807581)
	1-238, gnl\|rheMac2\|chr12 (59837528-59837886)
	1-238, gnl\|rn3\|chr9 (52623426-52623775)

	273-864, gnl\|bosTau2\|chr2 (42759820-42759243)
	273-864, gnl\|Hg17\|chr2 (196889228-196888574)
	273-864, gnl\|Mm7\|chr1 (54044568-54043940)