Non-Coding RNA Search

Ss1.1-Pig4-TMW8059M19.5

Sequence:


               
               GAAAGGAGAACTGAACAACTCCACAGTAGTAGTTCGGGAAGTCAACATCCCTCTCATTTA
GTAACCTAAAGAGTAAGTACACAGAAAATCAGCAGCCAAGAAGAACTAAACATCATCAAC
CAACAGGATATCATTGCCATATATAGAACACTTCAACCAACAACAGCAGAACACACATTC
TTTTCAAGTGCCCATGGAGCATTCTCCAAGGTAGACCATATTCTGGGTCATCAGACAACC
TCAATAAAATTAAAAGACTGGGAACAGAAGGTTATCTGATCACAGTGAACTCAGGTTCTA
GTTTGACTAACAAAAAGATGACAAGAACATCTCCAAACACATAGAAATTAACATTTCTAA
GTGATCCTTAGGGCAAGAGGAAGTCTTAAGGTAAATTAAAAAAGAGGAAAAAAAAAAAAA
CCTAACAAAAAAACCTTGAGCTGGATGAAATGCAAATGCATCAGAATTTGCAAGGTGCAG
CCAAAGAAGTGCCAAGAGGGAAACACTGAATGCTTCCATTAGGAATCTCCCTGCAAAGTG
TGTGCCTGTTTCCTCAGACAAGCTTGGAGGTCCTATCTATCAGAAATCAGGGCTGCTGTC
CTCAGCTCCTATGCCCCCTACTTCCCCATCAGAGTCTGTCCTTGGGTGTCTTCCCTAGAA
GACTGGGAGCAGGAAGATAGGGAGCAGTGAGGTGCTATGATGTATTCTTTTTTTTTTTTT
TTAATTTTATTTTTTTACTTTTTTTTATTACTCAAATGAATTTATCACATCTGTAGTTGT
ATAATGATCATAACAATCTGATTTCACAGGATTTCCATCCCACAGCCCAAGCACATCCCC
CCACCCCCCAAACTGTCTCCTCCGGAGACCCCAAGTGTTTTTCAATGTGTGAGTCAGCAT
CTGTTCTGCAAAAAGAAGTTGTCTGTCCTTTTTTCAGATTCCACATGTCAGTGAAAGCAT
TTGATGTTGGTGTCTCATTGTATGGCTGACTTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGAGAACTGAACAACTCCACAGTAGTAGTTCGGGAAGTCAACATCCCTCTCATTTA
GTAACCTAAAGAGTAAGTACACAGAAAATCAGCAGCCAAGAAGAACTAAACATCATCAAC
CAACAGGATATCATTGCCATATATAGAACACTTCAACCAACAACAGCAGAACACACATTC
TTTTCAAGTGCCCATGGAGCATTCTCCAAGGTAGACCATATTCTGGGTCATCAGACAACC
TCAATAAAATTAAAAGACTGGGAACAGAAGGTTATCTGATCACAGTGAACTCAGGTTCTA
GTTTGACTAACAAAAAGATGACAAGAACATCTCCAAACACATAGAAATTAACATTTCTAA
GTGATCCTTAGGGCAAGAGGAAGTCTTAAGGTAAATTAAAAAAGAGGAAAAAAAAAAAAA
CCTAACAAAAAAACCTTGAGCTGGATGAAATGCAAATGCATCAGAATTTGCAAGGTGCAG
CCAAAGAAGTGCCAAGAGGGAAACACTGAATGCTTCCATTAGGAATCTCCCTGCAAAGTG
TGTGCCTGTTTCCTCAGACAAGCTTGGAGGTCCTATCTATCAGAAATCAGGGCTGCTGTC
CTCAGCTCCTATGCCCCCTACTTCCCCATCAGAGTCTGTCCTTGGGTGTCTTCCCTAGAA
GACTGGGAGCAGGAAGATAGGGAGCAGTGAGGTGCTATGATGTATTCTTTTTTTTTTTTT
TTAATTTTATTTTTTTACTTTTTTTTATTACTCAAATGAATTTATCACATCTGTAGTTGT
ATAATGATCATAACAATCTGATTTCACAGGATTTCCATCCCACAGCCCAAGCACATCCCC
CCACCCCCCAAACTGTCTCCTCCGGAGACCCCAAGTGTTTTTCAATGTGTGAGTCAGCAT
CTGTTCTGCAAAAAGAAGTTGTCTGTCCTTTTTTCAGATTCCACATGTCAGTGAAAGCAT
TTGATGTTGGTGTCTCATTGTATGGCTGACTTCACT

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-420, gnl|bosTau2|chr11 (53681819-53682264)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-420, gnl|bosTau2|chr11 (53681819-53682264)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.29274)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               pgl (0.118483)