Non-Coding RNA Search

Ss1.1-Pig4-TMW8059N07.3

Sequence:


               
               CTGTCCTCTCCGCGTCCGCAGAGCCCAGCTCTTGCTCTGGCGGCATATGCACTGCTAAGC
CTGGATAGAAAGCTTGAGTCTTGAGGGTGGCAGGGTCGCTGTTCAGCAGATGGGGACTGT
AGAGGCGGCTGGGGGTGGCCAGCTAGGTGGCCCGGGGCCTGGGCAGGTCTGCAGTGGCTG
CAGAGTTAGCTCCCTTCCAAATCTCCAGGTGCCCTGAAAAGGCGCTCGGTCCTGATTTGT
CACTCTTCCACTCCGTTGTTCTCCTGAGACAGAGTGGGTTCTTGCAGGGCTCTTTCCTGG
AGTTCTCGAAGCGCTTCAACGTCCTGCCCTCGGCATAGCCGCCTCCGATAGGGGAGGGGC
TGCCGCTGGGCGCCAGCGCACAGACGGGAGGAAGAGATGGGGCTCCAAAGCCCAGTCAGC
ATTGGCTGCACCGCTAACGGGCACCTGGCGTATTTGATTTACCACCAGCAAATCACCTGC
CCTGGTGTTTCATTTGGGGTCATCAGAGATGAAGAAAGTCCCAAACAAAGGAAACCCTGA
AAGTGTCTCAAAGGGCAGGCCTCCGTGTCATCTGCCCCGGGCTGCCCAGGACTGGGCTCA
TGGGGCAGGAGCCCAAGCATCCTTGACCTTGACCTAGAGCAGCTATTCAGGGGTGGGCAG
GGCATCTGCCTGAGTCTCACCAGCCGGGCTCAGAAGCAACCCTTGGAGAAACCGGGAGAA
ACCACCTTCTCCCCAGCCCTTCTCGTGCCCGCGACCTCGCGCAGGCCCCGTTTTTACCCT
AATCACCGAAATTGGTCTTTTATTTCTCCAGCAGAGGTATTTTCCTCTGGATCGTTTTAT
GCTGTTTTCGCAGCTCATCACCTCTCTGCCCCCCCAGACTCCTGTGGTGCACAGACTGAG
GGAGGGGCCCAAACACCGCCGGTGGCCTTGCAGACAGAGCAAAACAGCCCACGCAGTCCC
CTCGGCTGCCTGTTTCCACGAGGTACTGGTCTCTTCGTGTTCACACCATGTGCCACTATA
TTTTGCATTTATACTTTGGTATTACACTCTTTTATAGATTGGCTCTTTTATAAATGATGT
GTAAATAGTTTTCCACTATCCGCCCTTCTAGAATGCCTATGGCATCTTTTTTTGTTGTTG
TTTGGTCCAATACATTTTTTTCCTGCATATGACTCTGTGTTTTTCAAATCCACATCTCTC
CTCCGTAGTATTTTTTAAATAAATGTTTACAACATTAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCCTCTCCGCGTCCGCAGAGCCCAGCTCTTGCTCTGGCGGCATATGCACTGCTAAGC
CTGGATAGAAAGCTTGAGTCTTGAGGGTGGCAGGGTCGCTGTTCAGCAGATGGGGACTGT
AGAGGCGGCTGGGGGTGGCCAGCTAGGTGGCCCGGGGCCTGGGCAGGTCTGCAGTGGCTG
CAGAGTTAGCTCCCTTCCAAATCTCCAGGTGCCCTGAAAAGGCGCTCGGTCCTGATTTGT
CACTCTTCCACTCCGTTGTTCTCCTGAGACAGAGTGGGTTCTTGCAGGGCTCTTTCCTGG
AGTTCTCGAAGCGCTTCAACGTCCTGCCCTCGGCATAGCCGCCTCCGATAGGGGAGGGGC
TGCCGCTGGGCGCCAGCGCACAGACGGGAGGAAGAGATGGGGCTCCAAAGCCCAGTCAGC
ATTGGCTGCACCGCTAACGGGCACCTGGCGTATTTGATTTACCACCAGCAAATCACCTGC
CCTGGTGTTTCATTTGGGGTCATCAGAGATGAAGAAAGTCCCAAACAAAGGAAACCCTGA
AAGTGTCTCAAAGGGCAGGCCTCCGTGTCATCTGCCCCGGGCTGCCCAGGACTGGGCTCA
TGGGGCAGGAGCCCAAGCATCCTTGACCTTGACCTAGAGCAGCTATTCAGGGGTGGGCAG
GGCATCTGCCTGAGTCTCACCAGCCGGGCTCAGAAGCAACCCTTGGAGAAACCGGGAGAA
ACCACCTTCTCCCCAGCCCTTCTCGTGCCCGCGACCTCGCGCAGGCCCCGTTTTTACCCT
AATCACCGAAATTGGTCTTTTATTTCTCCAGCAGAGGTATTTTCCTCTGGATCGTTTTAT
GCTGTTTTCGCAGCTCATCACCTCTCTGCCCCCCCAGACTCCTGTGGTGCACAGACTGAG
GGAGGGGCCCAAACACCGCCGGTGGCCTTGCAGACAGAGCAAAACAGCCCACGCAGTCCC
CTCGGCTGCCTGTTTCCACGAGGTACTGGTCTCTTCGTGTTCACACCATGTGCCACTATA
TTTTGCATTTATACTTTGGTATTACACTCTTTTATAGATTGGCTCTTTTATAAATGATGT
GTAAATAGTTTTCCACTATCCGCCCTTCTAGAATGCCTATGGCATCTTTTTTTGTTGTTG
TTTGGTCCAATACATTTTTTTCCTGCATATGACTCTGTGTTTTTCAAATCCACATCTCTC
CTCCGTAGTATTTTTTAAATAAATGTTTACAACATTAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               292-1234, gnl|bosTau2|chr11 (84644358-84645290)
               

               
               292-1234, gnl|Hg17|chr9 (130791679-130792613)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-1234, gnl|bosTau2|chr11 (84644358-84645290)
               

               
               292-1234, gnl|Hg17|chr9 (130791679-130792613)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               elu (0.770713)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               ese (0.253004)
               

               
               clu (0.239292)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               ese (0.253004)
               

               
               clu (0.239292)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	292-1234, gnl\|bosTau2\|chr11 (84644358-84645290)
	292-1234, gnl\|Hg17\|chr9 (130791679-130792613)

	elu (0.770713)
	gul (0.355177)
	eye (0.341006)
	ese (0.253004)
	clu (0.239292)
	aor (0.195274)
	ton (0.1755)
	fhi (0.169578)
	hyp (0.142837)
	ste (0.135208)
	nmm (0.132802)
	ute (0.132784)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	cty (0.10408)