Ss1.1-Pig4-TMW8059N08.3
|
GGGAAAAGCAGGGTCACTGTCAACAGGGATGGGCCACAGTCCGTCTCCAAATCCCTGCCA
ACGCCTGTTTAGAATAGGTTGTGTCCAGGCCGGAAGGGTGGCCTGGAAGACGTCTGAGCT
CCTTTCCAGCTCTGTTAGAGTTTCACGATCACACAAAATCGCCCTTCACTCTGAACAGTC
CCCTCTCATCTGCCACCTTCGCCAGCGAGGGTGCCTGGGCACTTCTGAGTGGGTTCTTTT
TGCTGAAGCTCAGCTCTCATATGGCCCTGTGGGTCTCTGGATTTGTCACTGTTCCTCCAC
ACCAGCCCTGCTTAGAGGCTAGCACAGGACAGGTTCATATAGGCAAAAGTAGAACCTTTC
CAAAAATTAAATTTTTTTTTTCCATTCACATTTTCAGATGCTCCAAAGACTACAGTGTTT
TAAATTGACTCTTTGTTATAATCTGTACAGTTGCCACGTGGTTGCCATGCTAAATATTAT
GGCCTGCGTTCACTTTATTCTAGTATCTGTTTAGAATAAACTCATTTTCCTAGACCTCTG
TCCACGAGCAAATTGGATGGAGTATACATTCAATTCAGAAGCATGAAGACAAAGACCCGC
CCCTCCCAGTGTGTAGGAAGATGTGATGATGGACAGGCACCTTCAAGGCAGGAGAAGTGG
CCACGTGATAGAGAAGGTGCCGGTGGCCTTTGATCCCTGGAGCCATCCCAGGACCCCAGC
CGCACCATGTTGTTGTAACCATCACACCACAAATCCCAAGTGTCCCTAAAAGGCGCAACT
AACACACACCTCTCGGGAACTAGGCAGAAACAGTCTAATGGGGAAGGTCAGGTCCACTGC
AGCGGTCTCATTTCTTTTAAATGCTTCAAAGACGTGTCCTTAAAATTTCAGCCTGCTTAC
GAATGCGTGAGCCGTTATGCTTAAAACTAGTAGGGGGATAAAAGTTTTTAAAAATTGCCA
AAAAGTTAGATGAAAATGTACTACTGTATAAAGCCAAGCTGTATATACTAAACATTTTTT
AGCAGAGTAATATTTATTTGCATAGCCTATTTATTGTATTCGTACTACACTGTTCTTAAA
TACTGGGATGAAATCAGTGACCGGAGGCAAGGACTCTCGCCTTTTAAGATACCATTAACT
AGGACTGCTGTGACACTGTCCGCTTGCGTTAACAGTTAGAAGATAGAAAACCCACCATCA
GGGTGTCTACCTAACTTCTCAGGGACTACACTTCGTAGTTTTCCACCATTAGAAGAGCTG
GTAAATATGAAACATTTGTGGAATTACCAGAATCGCCATTCACAGTATTTTCTTTCTCAG
TTTTTCATGCTTTCCGCTTCTGTATATATGACCGTGCTGGGTATTTATCAAAGCTAGTAA
GCAATAATTTATATGTAAAAATGGCCAAGCAATATAAGGTGAAAACTTATATAAGTCACT
GCTACTTTATCTTGTATTTTCAAGTGTTTTTTTTTTTTTAAAAAACTGCTTTTCCAAATA
TAAGATTATGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAAAAGCAGGGTCACTGTCAACAGGGATGGGCCACAGTCCGTCTCCAAATCCCTGCCA
ACGCCTGTTTAGAATAGGTTGTGTCCAGGCCGGAAGGGTGGCCTGGAAGACGTCTGAGCT
CCTTTCCAGCTCTGTTAGAGTTTCACGATCACACAAAATCGCCCTTCACTCTGAACAGTC
CCCTCTCATCTGCCACCTTCGCCAGCGAGGGTGCCTGGGCACTTCTGAGTGGGTTCTTTT
TGCTGAAGCTCAGCTCTCATATGGCCCTGTGGGTCTCTGGATTTGTCACTGTTCCTCCAC
ACCAGCCCTGCTTAGAGGCTAGCACAGGACAGGTTCATATAGGCAAAAGTAGAACCTTTC
CAAAAATTAAATTTTTTTTTTCCATTCACATTTTCAGATGCTCCAAAGACTACAGTGTTT
TAAATTGACTCTTTGTTATAATCTGTACAGTTGCCACGTGGTTGCCATGCTAAATATTAT
GGCCTGCGTTCACTTTATTCTAGTATCTGTTTAGAATAAACTCATTTTCCTAGACCTCTG
TCCACGAGCAAATTGGATGGAGTATACATTCAATTCAGAAGCATGAAGACAAAGACCCGC
CCCTCCCAGTGTGTAGGAAGATGTGATGATGGACAGGCACCTTCAAGGCAGGAGAAGTGG
CCACGTGATAGAGAAGGTGCCGGTGGCCTTTGATCCCTGGAGCCATCCCAGGACCCCAGC
CGCACCATGTTGTTGTAACCATCACACCACAAATCCCAAGTGTCCCTAAAAGGCGCAACT
AACACACACCTCTCGGGAACTAGGCAGAAACAGTCTAATGGGGAAGGTCAGGTCCACTGC
AGCGGTCTCATTTCTTTTAAATGCTTCAAAGACGTGTCCTTAAAATTTCAGCCTGCTTAC
GAATGCGTGAGCCGTTATGCTTAAAACTAGTAGGGGGATAAAAGTTTTTAAAAATTGCCA
AAAAGTTAGATGAAAATGTACTACTGTATAAAGCCAAGCTGTATATACTAAACATTTTTT
AGCAGAGTAATATTTATTTGCATAGCCTATTTATTGTATTCGTACTACACTGTTCTTAAA
TACTGGGATGAAATCAGTGACCGGAGGCAAGGACTCTCGCCTTTTAAGATACCATTAACT
AGGACTGCTGTGACACTGTCCGCTTGCGTTAACAGTTAGAAGATAGAAAACCCACCATCA
GGGTGTCTACCTAACTTCTCAGGGACTACACTTCGTAGTTTTCCACCATTAGAAGAGCTG
GTAAATATGAAACATTTGTGGAATTACCAGAATCGCCATTCACAGTATTTTCTTTCTCAG
TTTTTCATGCTTTCCGCTTCTGTATATATGACCGTGCTGGGTATTTATCAAAGCTAGTAA
GCAATAATTTATATGTAAAAATGGCCAAGCAATATAAGGTGAAAACTTATATAAGTCACT
GCTACTTTATCTTGTATTTTCAAGTGTTTTTTTTTTTTTAAAAAACTGCTTTTCCAAATA
TAAGATTATGTT
|
|
102-332, gnl|bosTau2|chr4 (10844192-10844420) |
|
102-332, gnl|canFam2|chr14 (38939238-38939412) |
|
102-332, gnl|dasNov1|scaffold_45667 (1455-1644) |
|
102-332, gnl|echTel1|scaffold_314918 (81597-81411) |
|
102-332, gnl|hg17|chr7 (21932409-21932598) |
|
102-332, gnl|Hg17|chr7 (21932708-21932421) |
|
102-332, gnl|loxAfr1|scaffold_16846 (10977-11161) |
|
102-332, gnl|mm7|chr12 (115495890-115495751) |
|
102-332, gnl|monDom2|scaffold_57 (4935474-4935302) |
|
102-332, gnl|oryCun1|scaffold_201552 (233784-233677) |
|
102-332, gnl|panTro1|chr6 (22968984-22969173) |
|
102-332, gnl|rheMac2|chr3 (104078730-104078545) |
|
102-332, gnl|rn3|chr6 (145035121-145034975) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
102-332, gnl|bosTau2|chr4 (10844192-10844420) |
|
102-332, gnl|canFam2|chr14 (38939238-38939412) |
|
102-332, gnl|dasNov1|scaffold_45667 (1455-1644) |
|
102-332, gnl|echTel1|scaffold_314918 (81597-81411) |
|
102-332, gnl|hg17|chr7 (21932409-21932598) |
|
102-332, gnl|Hg17|chr7 (21932708-21932421) |
|
102-332, gnl|loxAfr1|scaffold_16846 (10977-11161) |
|
102-332, gnl|mm7|chr12 (115495890-115495751) |
|
102-332, gnl|monDom2|scaffold_57 (4935474-4935302) |
|
102-332, gnl|oryCun1|scaffold_201552 (233784-233677) |
|
102-332, gnl|panTro1|chr6 (22968984-22969173) |
|
102-332, gnl|rheMac2|chr3 (104078730-104078545) |
|
102-332, gnl|rn3|chr6 (145035121-145034975) |
|
spc (1.02029) |
|
tbr (0.308356) |
|
ova (0.258264) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
fco (0.157208) |
|
lun (0.150489) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
cst (0.140036) |
|
pla (0.133672) |
|
cty (0.10408) |
|
spc (1.02029) |
|
tbr (0.308356) |
|
ova (0.258264) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
fco (0.157208) |
|
lun (0.150489) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
cst (0.140036) |
|
pla (0.133672) |
|
cty (0.10408) |
