Non-Coding RNA Search

Ss1.1-Pig4-TMW8059N17.3

Sequence:


               
               CGATGATGTGGGAGAGGATGAAGATGAGGACGACGGTTTCTTTGTGCCCCATGGGTACCT
TTCTGAGGATGAAGGGGTAACTGAGGAATGTGCCGACCCGGAGAACCACAAGGTTCGCCA
GAAACTGAAGGCCAAGGAGTGGGACGAGTTCCTGGCCAAAGGAAAGAGGTTCCGCGTCCT
CCAGCCCGTGAAGATCGGCTGCATCTGGGCATCCAACAAGGATGGTGGCGCTGATCTGAA
GGTGCTGCAGCAGTTCACAGCCTGCCTTCTGGAGAGTGTCCCTTCCGAGGAGGAGCAGAC
GCCCAAGGCCTCCAAGAGGGAGAAGAGGGACCAGCAGATCCTGGCCCAGCTGCTCCCGCT
GCTGCATGGGAACGTGAATGGGAGCAAAGTCATCATCCGGGAGTTCCAGGAGTGCTGCCG
CCGAGGACTGCTCAGCAAGGACTCCAGCAGCCCTGAGCGCACCTCCGCCAGCCCCCCAAG
CCCCGGCCCTTCCCGCCCACAGACCCCCACTGCCGGCGAGGACACTACCATCCCCTCCAA
GGCCAGGCTCAAGCGGATTATTTCTGAGAACTCGGTGTATGAGAAGAGGCCTGACTACAG
GATGTGCTGGTACGTCCACCCACAGGTGCTGAAGAGCTTTGCCCAGGAGCACCTGCCCGT
GCCCTGCCAGTGGAGTTATGTTACCACAGTGCCCTCGGCCACCAGGGAGGACAGTGGCAG
CGTCCCCACTCCAGGGCCCAGCCAGGGGATGCCCATCTCACTGAAGAGGAAGTCAGCGGG
CAGCATGTGCATCACCCAGTTCATGAAGAAGCGTAGGCACGACGGGCAGGTCGGAGCTGG
AGACCTAGACGGCTTCCAAGCAGACACAGAGGAGGAGGAGGAGGAGGAAGGCGACTGTGT
GATCATGGACATCTCAGATGTTGGGGACATCCAGGCCACGTGTGGAACCACTTCTGGAGC
TGGGGGGTCTGTGGCAATGGACACCAGTGAGAGCCTTGTGGCCTCCAGCTCACTCGGCCC
TTCCTGAGCACCAGGACTGGCCTGTGTATGTATGTAGAATGGTTAGGGTATTCTCAGATA
CTTGAAAGTCCTGATTCCTATTGTAAAGAGCACTTTGTCCTGCTTCACAGACCTCCCTGG
AGGTTTGGAAAGTTTTATATAGGATGCTTGATTAGTTCTTTTTGATATTTGTAAAAATCT
TCCCCAAAAGCTGCATATTAATCTGCCCTTTAATAAAGCATTATTGTGATGTGATGACCT
GCACAGGGAAAGCCTGGTTGTGCCCTGGACCCCTGGCAGGTGCTGTGACAAAACTCTTGT
AAATGAATTGAAGCCCCACAGGTGCGGCGTGGCACCGTACCTGACATGGATGTGTATAAA
CTATTGTCTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATGATGTGGGAGAGGATGAAGATGAGGACGACGGTTTCTTTGTGCCCCATGGGTACCT
TTCTGAGGATGAAGGGGTAACTGAGGAATGTGCCGACCCGGAGAACCACAAGGTTCGCCA
GAAACTGAAGGCCAAGGAGTGGGACGAGTTCCTGGCCAAAGGAAAGAGGTTCCGCGTCCT
CCAGCCCGTGAAGATCGGCTGCATCTGGGCATCCAACAAGGATGGTGGCGCTGATCTGAA
GGTGCTGCAGCAGTTCACAGCCTGCCTTCTGGAGAGTGTCCCTTCCGAGGAGGAGCAGAC
GCCCAAGGCCTCCAAGAGGGAGAAGAGGGACCAGCAGATCCTGGCCCAGCTGCTCCCGCT
GCTGCATGGGAACGTGAATGGGAGCAAAGTCATCATCCGGGAGTTCCAGGAGTGCTGCCG
CCGAGGACTGCTCAGCAAGGACTCCAGCAGCCCTGAGCGCACCTCCGCCAGCCCCCCAAG
CCCCGGCCCTTCCCGCCCACAGACCCCCACTGCCGGCGAGGACACTACCATCCCCTCCAA
GGCCAGGCTCAAGCGGATTATTTCTGAGAACTCGGTGTATGAGAAGAGGCCTGACTACAG
GATGTGCTGGTACGTCCACCCACAGGTGCTGAAGAGCTTTGCCCAGGAGCACCTGCCCGT
GCCCTGCCAGTGGAGTTATGTTACCACAGTGCCCTCGGCCACCAGGGAGGACAGTGGCAG
CGTCCCCACTCCAGGGCCCAGCCAGGGGATGCCCATCTCACTGAAGAGGAAGTCAGCGGG
CAGCATGTGCATCACCCAGTTCATGAAGAAGCGTAGGCACGACGGGCAGGTCGGAGCTGG
AGACCTAGACGGCTTCCAAGCAGACACAGAGGAGGAGGAGGAGGAGGAAGGCGACTGTGT
GATCATGGACATCTCAGATGTTGGGGACATCCAGGCCACGTGTGGAACCACTTCTGGAGC
TGGGGGGTCTGTGGCAATGGACACCAGTGAGAGCCTTGTGGCCTCCAGCTCACTCGGCCC
TTCCTGAGCACCAGGACTGGCCTGTGTATGTATGTAGAATGGTTAGGGTATTCTCAGATA
CTTGAAAGTCCTGATTCCTATTGTAAAGAGCACTTTGTCCTGCTTCACAGACCTCCCTGG
AGGTTTGGAAAGTTTTATATAGGATGCTTGATTAGTTCTTTTTGATATTTGTAAAAATCT
TCCCCAAAAGCTGCATATTAATCTGCCCTTTAATAAAGCATTATTGTGATGTGATGACCT
GCACAGGGAAAGCCTGGTTGTGCCCTGGACCCCTGGCAGGTGCTGTGACAAAACTCTTGT
AAATGAATTGAAGCCCCACAGGTGCGGCGTGGCACCGTACCTGACATGGATGTGTATAAA
CTATTGTCTAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-202, - strand, RNAz p=0.972769

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-202, - strand, RNAz p=0.972769

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               84-351, gnl|bosTau2|chr7 (15078057-15077790)
               

               
               84-351, gnl|Hg17|chr19 (4382947-4383238)
               

               
               84-351, gnl|Mm7|chr17 (54223405-54223669)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-351, gnl|bosTau2|chr7 (15078057-15077790)
               

               
               84-351, gnl|Hg17|chr19 (4382947-4383238)
               

               
               84-351, gnl|Mm7|chr17 (54223405-54223669)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               mcp (0.170648)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mcp (0.170648)
               

               
               nbm (0.0993246)

	84-351, gnl\|bosTau2\|chr7 (15078057-15077790)
	84-351, gnl\|Hg17\|chr19 (4382947-4383238)
	84-351, gnl\|Mm7\|chr17 (54223405-54223669)