Non-Coding RNA Search

Ss1.1-Pig4-TMW8059N19.5

Sequence:


               
               CGTACATCTTTTTATAAAACAGAGGGTAAGGGCCTGCGAAGGAGGTCGCGGGGCGTGGCG
CCGGAACCAGGCGGGCGCGGCCGGGACGCGGGGTCGAGGGGGAGGCGCGAGCTAGACGAA
GATCTGGATGCGGTCGCGGATGGGCTGGCGGCAGATGGGGCAGGCGCTGAGCGCGGCTCC
GCAGGGCGCGCACGCGCCGTGGCCGCACTGGAACACGAGGCGGATGTGGCTGTCGATGCA
GATGGGGCAGGTGATGCGCTCCTCCATCTGCCGGTAGCGGCTCTGCAGCTCCTCCACCAG
CTGCCGCGGCGGACCAGGTGCGGGGCCCGCGCTGAGCACCTCCGTGCCGTCTGGCCGCAG
CTTCTTGCCGATGACCACCTGGCATCTGATGCACTTCTTCATCCTGCGCGCACACTCCTC
GCACACGGTGCGGTGCTGGCACGGCGAGAACAGCACCAGTAGCGCCAGCTCAGAGCACAC
CAGGCACTCCGCGGCCTCGGGCCCCGACGGCGCGGCCACGTGCACGTTGGTCACCGCGTT
GGGGGCGCTGAGCACCAGCCTCGGGCCCTGGGCCGTGCCGCCGCCAGCCTGGCGCTCCCG
GAAGCGCTGGGCACAGCACTGCAGGGCTTTGAGCAAGCGGCCCTCAGTGGCCAGGTCCAG
CGGGCTCCGGCCCCGGTGGTTGGCATAGCTCAGGTCGGCGCCCTCCAGCACCAAGAAGCA
GGCCACCGCTGCGCCTGCGGTCAGCTCTGCGTTGCCCGGAAGGCCCGAAGCCTGTAGCCG
CGACAGCAGCTGCAAGGGCCCCGGGTCCCCCCCGGCCCCATCGGCTGCCATGGGAAGCAG
TTGGTGACGCTGCAGTGCCACATGCAGGGCCGTGTCCCCCTCCTCATCCTCGGCGTTGAC
GCTGCAGCCAGAGTCCACCAGCAGCGGCACCAGCCCCACGTGGGCCTGCTGCACAGCCAG
GTGCAGTGGGGACTGGAGCTTACGGTTGCGGACGTTTACGTCACAGCGGCCCTCTCGGAT
GAGAACCTGGGCCACTTCCCAGTGGTTGTTGAGAGCAGCCAGGTGCAAGGCCGTGAATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTACATCTTTTTATAAAACAGAGGGTAAGGGCCTGCGAAGGAGGTCGCGGGGCGTGGCG
CCGGAACCAGGCGGGCGCGGCCGGGACGCGGGGTCGAGGGGGAGGCGCGAGCTAGACGAA
GATCTGGATGCGGTCGCGGATGGGCTGGCGGCAGATGGGGCAGGCGCTGAGCGCGGCTCC
GCAGGGCGCGCACGCGCCGTGGCCGCACTGGAACACGAGGCGGATGTGGCTGTCGATGCA
GATGGGGCAGGTGATGCGCTCCTCCATCTGCCGGTAGCGGCTCTGCAGCTCCTCCACCAG
CTGCCGCGGCGGACCAGGTGCGGGGCCCGCGCTGAGCACCTCCGTGCCGTCTGGCCGCAG
CTTCTTGCCGATGACCACCTGGCATCTGATGCACTTCTTCATCCTGCGCGCACACTCCTC
GCACACGGTGCGGTGCTGGCACGGCGAGAACAGCACCAGTAGCGCCAGCTCAGAGCACAC
CAGGCACTCCGCGGCCTCGGGCCCCGACGGCGCGGCCACGTGCACGTTGGTCACCGCGTT
GGGGGCGCTGAGCACCAGCCTCGGGCCCTGGGCCGTGCCGCCGCCAGCCTGGCGCTCCCG
GAAGCGCTGGGCACAGCACTGCAGGGCTTTGAGCAAGCGGCCCTCAGTGGCCAGGTCCAG
CGGGCTCCGGCCCCGGTGGTTGGCATAGCTCAGGTCGGCGCCCTCCAGCACCAAGAAGCA
GGCCACCGCTGCGCCTGCGGTCAGCTCTGCGTTGCCCGGAAGGCCCGAAGCCTGTAGCCG
CGACAGCAGCTGCAAGGGCCCCGGGTCCCCCCCGGCCCCATCGGCTGCCATGGGAAGCAG
TTGGTGACGCTGCAGTGCCACATGCAGGGCCGTGTCCCCCTCCTCATCCTCGGCGTTGAC
GCTGCAGCCAGAGTCCACCAGCAGCGGCACCAGCCCCACGTGGGCCTGCTGCACAGCCAG
GTGCAGTGGGGACTGGAGCTTACGGTTGCGGACGTTTACGTCACAGCGGCCCTCTCGGAT
GAGAACCTGGGCCACTTCCCAGTGGTTGTTGAGAGCAGCCAGGTGCAAGGCCGTGAATCC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               70-353, gnl|bosTau2|chr16 (37693059-37693344)
               

               
               70-353, gnl|Hg17|chr1_random (1264501-1264231)
               

               
               70-353, gnl|Mm7|chr4 (154644272-154644538)
               


               
               408-584, gnl|bosTau2|chr16 (37694409-37694584)
               

               
               408-584, gnl|Hg17|chr1_random (1263416-1263236)
               

               
               408-584, gnl|Mm7|chr4 (154644786-154644961)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-353, gnl|bosTau2|chr16 (37693059-37693344)
               

               
               70-353, gnl|Hg17|chr1_random (1264501-1264231)
               

               
               70-353, gnl|Mm7|chr4 (154644272-154644538)
               


               
               408-584, gnl|bosTau2|chr16 (37694409-37694584)
               

               
               408-584, gnl|Hg17|chr1_random (1263416-1263236)
               

               
               408-584, gnl|Mm7|chr4 (154644786-154644961)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fhi (0.339155)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               cag (0.151194)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               cag (0.151194)

	70-353, gnl\|bosTau2\|chr16 (37693059-37693344)
	70-353, gnl\|Hg17\|chr1_random (1264501-1264231)
	70-353, gnl\|Mm7\|chr4 (154644272-154644538)

	408-584, gnl\|bosTau2\|chr16 (37694409-37694584)
	408-584, gnl\|Hg17\|chr1_random (1263416-1263236)
	408-584, gnl\|Mm7\|chr4 (154644786-154644961)

	fhi (0.339155)
	col (0.195008)
	nep (0.183925)
	fty (0.17584)
	cki (0.165235)
	cag (0.151194)