Non-Coding RNA Search

Ss1.1-Pig4-TMW8059N23.3

Sequence:


               
               CGAAGCTGTAGACCTTCCAGCCCTGCCCTCGCCCCTGTCCTGCTGGCCCTGCTGCTGGGT
GGTGCAGCTCGGGCCGTGGAGATCGTGGGTGGGCAGGAAGCCCAGCCCCACTCACGCCCC
TATGTGGCATCGCTGCAACTGCCCTGGCCCCCCAACAGCCACTTCTGTGGGGGCACCTTG
ATCCACCCAAGCTTCGTGCTGACCGCAGCCCACTGCCTGAACACCATGAACCCCACACGG
GTGAATGTGGTGCTGGGGGCCCACAACCTGCAGACCCCAGAGCCCACCCAGCAGATTTTC
AGGATCGCCCGCCTATTTGAGAACAACTATGACCCACAGCAAAAGCTCAACGATGTTCTC
CTCCTGCAGCTGGACCGCCCGGCCACCCTCAACACCCAGGTTGCTGTGGCCCAGCTCCCC
CAGCAGGACCAGCTGCTGCCCCACGGCACCCGGTGCCTGGCCATGGGCTGGGGCCGCCTG
GGCACCCTTGAGCCACAGCCCCGGGTTCTGCAGGAGCTCAATGTTACCGTGGTCACTTTC
CTGTGCCGGCCACAGAACGTGTGCACATTTGTGCCCCAACGCAGCGCTGGCATCTGCTTC
GGGGACTCGGGTGGCCCCTTGATCTGCGACGGCGTCCTCCAGGGCGTGGACTCTTTCGTC
ATCCGGGGATGCGCCACTGGCCAGTTCCCAGACTTCTTTGCCCGGGTTGCTCTCTACGTG
AACTGGATCCACTCTGTGCTGAGGAGCGTGGGGGGCGAGGACGGCCCTGGAGCCCCCAAC
CAGAACCCCCACAGGCGCTGAGGCCGAGCTGTGACAGAGGCGGCAGGTCTGCTTCTGATC
CTGTGACCACCCCCTGCACCCCCATGCCCTTGGCTCCAGCCCCACTGAGCTGTCAATAAA
AGCTGAAACGCCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAAGCTGTAGACCTTCCAGCCCTGCCCTCGCCCCTGTCCTGCTGGCCCTGCTGCTGGGT
GGTGCAGCTCGGGCCGTGGAGATCGTGGGTGGGCAGGAAGCCCAGCCCCACTCACGCCCC
TATGTGGCATCGCTGCAACTGCCCTGGCCCCCCAACAGCCACTTCTGTGGGGGCACCTTG
ATCCACCCAAGCTTCGTGCTGACCGCAGCCCACTGCCTGAACACCATGAACCCCACACGG
GTGAATGTGGTGCTGGGGGCCCACAACCTGCAGACCCCAGAGCCCACCCAGCAGATTTTC
AGGATCGCCCGCCTATTTGAGAACAACTATGACCCACAGCAAAAGCTCAACGATGTTCTC
CTCCTGCAGCTGGACCGCCCGGCCACCCTCAACACCCAGGTTGCTGTGGCCCAGCTCCCC
CAGCAGGACCAGCTGCTGCCCCACGGCACCCGGTGCCTGGCCATGGGCTGGGGCCGCCTG
GGCACCCTTGAGCCACAGCCCCGGGTTCTGCAGGAGCTCAATGTTACCGTGGTCACTTTC
CTGTGCCGGCCACAGAACGTGTGCACATTTGTGCCCCAACGCAGCGCTGGCATCTGCTTC
GGGGACTCGGGTGGCCCCTTGATCTGCGACGGCGTCCTCCAGGGCGTGGACTCTTTCGTC
ATCCGGGGATGCGCCACTGGCCAGTTCCCAGACTTCTTTGCCCGGGTTGCTCTCTACGTG
AACTGGATCCACTCTGTGCTGAGGAGCGTGGGGGGCGAGGACGGCCCTGGAGCCCCCAAC
CAGAACCCCCACAGGCGCTGAGGCCGAGCTGTGACAGAGGCGGCAGGTCTGCTTCTGATC
CTGTGACCACCCCCTGCACCCCCATGCCCTTGGCTCCAGCCCCACTGAGCTGTCAATAAA
AGCTGAAACGCCAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6174926|sp|P24158|PRTN3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6174926|sp|P24158|PRTN3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-519, - strand, RNAz p=0.661749

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-519, - strand, RNAz p=0.661749

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               61-228, gnl|bosTau2|chr7 (29298612-29298451)
               

               
               61-228, gnl|canFam2|chr20 (60931862-60931698)
               

               
               61-228, gnl|dasNov1|scaffold_219402 (986-1167)
               

               
               61-228, gnl|echTel1|scaffold_274396 (7643-7479)
               

               
               61-228, gnl|fr1|chrUn (310835830-310835999)
               

               
               61-228, gnl|hg17|chr19 (794459-794632)
               

               
               61-228, gnl|Hg17|chr19 (794460-794627)
               

               
               61-228, gnl|loxAfr1|scaffold_24321 (16793-16957)
               

               
               61-228, gnl|mm7|chr10 (79660444-79660616)
               

               
               61-228, gnl|Mm7|chr10 (79660444-79660611)
               

               
               61-228, gnl|monDom2|scaffold_1613 (5974-5810)
               

               
               61-228, gnl|oryCun1|scaffold_203910 (150669-150508)
               

               
               61-228, gnl|panTro1|chr20 (851211-851383)
               

               
               61-228, gnl|rheMac2|chr19 (580240-580413)
               

               
               61-228, gnl|rn3|chr7 (11337835-11337663)
               

               
               61-228, gnl|tetNig1|chr8 (636784-636639)
               


               
               361-599, gnl|bosTau2|chr7 (29296837-29296599)
               

               
               361-599, gnl|Hg17|chr19 (797138-797376)
               

               
               361-599, gnl|Mm7|chr10 (79661943-79662181)
               


               
               601-803, gnl|bosTau2|chr7 (29296241-29296042)
               

               
               601-803, gnl|Hg17|chr19 (798799-799036)
               

               
               601-803, gnl|Mm7|chr10 (79662835-79663071)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-228, gnl|bosTau2|chr7 (29298612-29298451)
               

               
               61-228, gnl|canFam2|chr20 (60931862-60931698)
               

               
               61-228, gnl|dasNov1|scaffold_219402 (986-1167)
               

               
               61-228, gnl|echTel1|scaffold_274396 (7643-7479)
               

               
               61-228, gnl|fr1|chrUn (310835830-310835999)
               

               
               61-228, gnl|hg17|chr19 (794459-794632)
               

               
               61-228, gnl|Hg17|chr19 (794460-794627)
               

               
               61-228, gnl|loxAfr1|scaffold_24321 (16793-16957)
               

               
               61-228, gnl|mm7|chr10 (79660444-79660616)
               

               
               61-228, gnl|Mm7|chr10 (79660444-79660611)
               

               
               61-228, gnl|monDom2|scaffold_1613 (5974-5810)
               

               
               61-228, gnl|oryCun1|scaffold_203910 (150669-150508)
               

               
               61-228, gnl|panTro1|chr20 (851211-851383)
               

               
               61-228, gnl|rheMac2|chr19 (580240-580413)
               

               
               61-228, gnl|rn3|chr7 (11337835-11337663)
               

               
               61-228, gnl|tetNig1|chr8 (636784-636639)
               


               
               361-599, gnl|bosTau2|chr7 (29296837-29296599)
               

               
               361-599, gnl|Hg17|chr19 (797138-797376)
               

               
               361-599, gnl|Mm7|chr10 (79661943-79662181)
               


               
               601-803, gnl|bosTau2|chr7 (29296241-29296042)
               

               
               601-803, gnl|Hg17|chr19 (798799-799036)
               

               
               601-803, gnl|Mm7|chr10 (79662835-79663071)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nbm (0.993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.993246)

	61-228, gnl\|bosTau2\|chr7 (29298612-29298451)
	61-228, gnl\|canFam2\|chr20 (60931862-60931698)
	61-228, gnl\|dasNov1\|scaffold_219402 (986-1167)
	61-228, gnl\|echTel1\|scaffold_274396 (7643-7479)
	61-228, gnl\|fr1\|chrUn (310835830-310835999)
	61-228, gnl\|hg17\|chr19 (794459-794632)
	61-228, gnl\|Hg17\|chr19 (794460-794627)
	61-228, gnl\|loxAfr1\|scaffold_24321 (16793-16957)
	61-228, gnl\|mm7\|chr10 (79660444-79660616)
	61-228, gnl\|Mm7\|chr10 (79660444-79660611)
	61-228, gnl\|monDom2\|scaffold_1613 (5974-5810)
	61-228, gnl\|oryCun1\|scaffold_203910 (150669-150508)
	61-228, gnl\|panTro1\|chr20 (851211-851383)
	61-228, gnl\|rheMac2\|chr19 (580240-580413)
	61-228, gnl\|rn3\|chr7 (11337835-11337663)
	61-228, gnl\|tetNig1\|chr8 (636784-636639)

	361-599, gnl\|bosTau2\|chr7 (29296837-29296599)
	361-599, gnl\|Hg17\|chr19 (797138-797376)
	361-599, gnl\|Mm7\|chr10 (79661943-79662181)

	601-803, gnl\|bosTau2\|chr7 (29296241-29296042)
	601-803, gnl\|Hg17\|chr19 (798799-799036)
	601-803, gnl\|Mm7\|chr10 (79662835-79663071)