Ss1.1-Pig4-TMW8059O06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCGCAATGTGTCGCCTCCAGTCAGTGCGCGTGGCCGCAGCAGGGGCTCGGCGCCGGGG TCTGGCGGGGCGGCGGTAGTCCCACCATCGCTCAGGATGCCCGAGATCAGGGTCACGCCC CTGGGAGCCGGCCAGGATGTGGGCCGAAGCTGCATCCTGGTCTCCATCGGGGGCAAGAAC GTCATGCTGGACTGCGGGATGCACATGGGCTTCAGTGACGACAGGCGCTTCCCTGACTTT TCGTACATCACCCGCCACGGCCGGCTGACCGACTTCCTGGACTGCGTGATCATCAGCCAC TTCCACCTGGACCACTGCGGGGCGCTCCCCTACTTCAGCGAGATGGTAGGCTATGACGGG CCCATCTACATGACGCAGCCCACGCAGGCCATCTGCCCCATCCTGCTGGAGGACTACCGC AAGATCGCCGTGGACAAGAAGGGCGAGGCCAACTTCTTCACGTCCCAGATGATCAAGGAC TGCATGAAGAAGGCGGTGGCCGTCCACCTCCACCAGACAGTGCAGGTGGATGATGAGCTG GAGATCAAGGCTTACTACGCGGGCCACGTGCTGGGCGCAGCCATGTTCCAGATTAAAGTG GGCTCAGAGTCTGTGGTCTACACGGGTGATTATAACATGACCCCGGACCGGCATTTGGGA GCCGCCTGGATTGACAAGTGCCGCCCCAACTTGCTGATCACAGAATCCACGTACGCCACG ACCATCCGCGACTCCAAGCGCTGCCGGGAGCGAGACTTCTTGAAGAAGGTCCACGAGACG GTGGAGCGTGGCGGGAAGGTGCTGATCCCTGTGTTTGCGCTGGGCCGCGCTCAGGAGCTG TGCATCCTGCTGGAGACCTTCTGGGAGCGCATGGACCTGAAGGCCCCCATCTACTTTTCC ACGGGCCTGACGGAGAAGGCCAACCACTACTACAAGCTCTTCATCCCCTGGACCAACCAG AAGATCCGCAAGACCTTTGTGCAGAGGAACATGTTCGAGTTCAAGCACATCAAGGCCTTC GACCGGGCTTTCGCTGACAGCCCGGGGCCCATGGTTGTCTTTGCCACCCCAGGAATGCTG CACGCCGGCCAGTCGCTCCAGATCTTCCGCAAGTGGGCAGGGAATGAGAAGAACATGGTC ATCATGCCTGGCTACTGCGTGCAGGGCACCGTGGGCCACAAGATCCTCAGCGGGCAGCGC AAGCTAGAGCTGGAGGGGCGGCAGGTGCTGGAGGTCAAGATGCAGGTGGAGTACATGTCC TTCAGTGCCCACGCGGACGCCAAGGGCATCATGCAGTTGGTGGGCCAGGCGGAGCCAGAG AACGTGCTGCTGGTGCACGGCGAGGCCAAGAAGATGGAGTTTCTAAAGCAGAAGATTGAG CAGGAATTCCGACTCAGCTGCTACATGCCGGCCAATGGCGAGACGGTGACACTGCCCACG AGCCCCAGCATCCCGGTGGGCATCTCGCTGGGGCTGCTGAAGAGGGAGATGGCTCAAGGA CTGCTCCCCGATGCCAAGAAGGCCCGGCTCCTGCACGGCACTCTCATCATGAAGGACAGC ACCTTCCGGCTCGTGTCCTCAGAGCAGGCCCTCAAGGAGCTGGGCCTGGCCGAGCACCAG CTGCGCTTCACCTGCCGCGTGCACCTGCACGACCCGCGCAAGGAGCAGGAGATGGCCATG CGCGTGTACAGCCACCTGAAGAGCCTCCTCAAGGACCACTGCGTGCAGCACCTCCCTGAC GGCTCCGTGACTGTGGAGTCCATCCTCATCCAGGCTGCTGCCCACTCTGAGGACCCAGGC ACCAAGGTGCTGCTGGTCTCCTGGACCTACCAGGACGAAGAGCTGGGAAGCTACCTCACA TCTCTGCTCAAGAAGGGCCTGCCCCAGGCCCCCTGAGGCCCTGCTGCCAGCCGGAGCCCC CTGGCTTCAGCTCCAGGACTGTGTCTGCGCCTCGGGTCTTCACTGTGTCCTCCACGGCCA GCCACGCCCTTCCCCTGTGGGGAGCCCCGGCACCAGGCACCTGCCCGGCTGGCTGCTTTA GCTGAAGAAGTAACCAGGGCTCGGGGCTCTTCTCCTTTTATTTTTACTTCTGGACTAACC CCAGGACATGGGCAAGGTGCCAGGATAAGGATCTCCAGTAAAACTGCCACAGGCCGTCTA GGTGGCTTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCGCAATGTGTCGCCTCCAGTCAGTGCGCGTGGCCGCAGCAGGGGCTCGGCGCCGGGG TCTGGCGGGGCGGCGGTAGTCCCACCATCGCTCAGGATGCCCGAGATCAGGGTCACGCCC CTGGGAGCCGGCCAGGATGTGGGCCGAAGCTGCATCCTGGTCTCCATCGGGGGCAAGAAC GTCATGCTGGACTGCGGGATGCACATGGGCTTCAGTGACGACAGGCGCTTCCCTGACTTT TCGTACATCACCCGCCACGGCCGGCTGACCGACTTCCTGGACTGCGTGATCATCAGCCAC TTCCACCTGGACCACTGCGGGGCGCTCCCCTACTTCAGCGAGATGGTAGGCTATGACGGG CCCATCTACATGACGCAGCCCACGCAGGCCATCTGCCCCATCCTGCTGGAGGACTACCGC AAGATCGCCGTGGACAAGAAGGGCGAGGCCAACTTCTTCACGTCCCAGATGATCAAGGAC TGCATGAAGAAGGCGGTGGCCGTCCACCTCCACCAGACAGTGCAGGTGGATGATGAGCTG GAGATCAAGGCTTACTACGCGGGCCACGTGCTGGGCGCAGCCATGTTCCAGATTAAAGTG GGCTCAGAGTCTGTGGTCTACACGGGTGATTATAACATGACCCCGGACCGGCATTTGGGA GCCGCCTGGATTGACAAGTGCCGCCCCAACTTGCTGATCACAGAATCCACGTACGCCACG ACCATCCGCGACTCCAAGCGCTGCCGGGAGCGAGACTTCTTGAAGAAGGTCCACGAGACG GTGGAGCGTGGCGGGAAGGTGCTGATCCCTGTGTTTGCGCTGGGCCGCGCTCAGGAGCTG TGCATCCTGCTGGAGACCTTCTGGGAGCGCATGGACCTGAAGGCCCCCATCTACTTTTCC ACGGGCCTGACGGAGAAGGCCAACCACTACTACAAGCTCTTCATCCCCTGGACCAACCAG AAGATCCGCAAGACCTTTGTGCAGAGGAACATGTTCGAGTTCAAGCACATCAAGGCCTTC GACCGGGCTTTCGCTGACAGCCCGGGGCCCATGGTTGTCTTTGCCACCCCAGGAATGCTG CACGCCGGCCAGTCGCTCCAGATCTTCCGCAAGTGGGCAGGGAATGAGAAGAACATGGTC ATCATGCCTGGCTACTGCGTGCAGGGCACCGTGGGCCACAAGATCCTCAGCGGGCAGCGC AAGCTAGAGCTGGAGGGGCGGCAGGTGCTGGAGGTCAAGATGCAGGTGGAGTACATGTCC TTCAGTGCCCACGCGGACGCCAAGGGCATCATGCAGTTGGTGGGCCAGGCGGAGCCAGAG AACGTGCTGCTGGTGCACGGCGAGGCCAAGAAGATGGAGTTTCTAAAGCAGAAGATTGAG CAGGAATTCCGACTCAGCTGCTACATGCCGGCCAATGGCGAGACGGTGACACTGCCCACG AGCCCCAGCATCCCGGTGGGCATCTCGCTGGGGCTGCTGAAGAGGGAGATGGCTCAAGGA CTGCTCCCCGATGCCAAGAAGGCCCGGCTCCTGCACGGCACTCTCATCATGAAGGACAGC ACCTTCCGGCTCGTGTCCTCAGAGCAGGCCCTCAAGGAGCTGGGCCTGGCCGAGCACCAG CTGCGCTTCACCTGCCGCGTGCACCTGCACGACCCGCGCAAGGAGCAGGAGATGGCCATG CGCGTGTACAGCCACCTGAAGAGCCTCCTCAAGGACCACTGCGTGCAGCACCTCCCTGAC GGCTCCGTGACTGTGGAGTCCATCCTCATCCAGGCTGCTGCCCACTCTGAGGACCCAGGC ACCAAGGTGCTGCTGGTCTCCTGGACCTACCAGGACGAAGAGCTGGGAAGCTACCTCACA TCTCTGCTCAAGAAGGGCCTGCCCCAGGCCCCCTGAGGCCCTGCTGCCAGCCGGAGCCCC CTGGCTTCAGCTCCAGGACTGTGTCTGCGCCTCGGGTCTTCACTGTGTCCTCCACGGCCA GCCACGCCCTTCCCCTGTGGGGAGCCCCGGCACCAGGCACCTGCCCGGCTGGCTGCTTTA GCTGAAGAAGTAACCAGGGCTCGGGGCTCTTCTCCTTTTATTTTTACTTCTGGACTAACC CCAGGACATGGGCAAGGTGCCAGGATAAGGATCTCCAGTAAAACTGCCACAGGCCGTCTA GGTGGCTTCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1274-1391, + strand, RNAz p=0.978455 | |
| 2009-2125, + strand, RNAz p=0.998587 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1274-1391, + strand, RNAz p=0.978455 | |
| 2009-2125, + strand, RNAz p=0.998587 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK123641, + | |
| 5' of AK123641, + |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 521-625, gnl|bosTau2|chr16 (37926632-37926736) | |
| 521-625, gnl|canFam2|chr5 (59490584-59490715) | |
| 521-625, gnl|danRer3|chr6 (19784658-19784552) | |
| 521-625, gnl|echTel1|scaffold_301770 (3752-3620) | |
| 521-625, gnl|fr1|chrUn (232480802-232480686) | |
| 521-625, gnl|galGal2|chr21 (2239310-2239203) | |
| 521-625, gnl|hg17|chr1 (1290818-1290949) | |
| 521-625, gnl|Hg17|chr1 (1290926-1290822) | |
| 521-625, gnl|mm7|chr4 (154874745-154874615) | |
| 521-625, gnl|Mm7|chr4 (154874635-154874739) | |
| 521-625, gnl|monDom2|scaffold_196 (13150-13291) | |
| 521-625, gnl|panTro1|chr1 (1179460-1179591) | |
| 521-625, gnl|rheMac2|chr1 (4383688-4383819) | |
| 521-625, gnl|rn3|chr5 (172753740-172753610) | |
| 521-625, gnl|tetNig1|chr9 (10278702-10278565) | |
| 521-625, gnl|xenTro1|scaffold_414 (455494-455376) | |
| 642-804, gnl|bosTau2|chr16 (37927094-37927257) | |
| 642-804, gnl|Hg17|chr1 (1290285-1290120) | |
| 642-804, gnl|Mm7|chr4 (154875089-154875252) | |
| 858-1055, gnl|bosTau2|chr16 (37927887-37928084) | |
| 858-1055, gnl|canFam2|chr5 (59488984-59489187) | |
| 858-1055, gnl|danRer3|chr6 (19787072-19786872) | |
| 858-1055, gnl|echTel1|scaffold_301770 (4825-4622) | |
| 858-1055, gnl|galGal2|chr21 (2241111-2240913) | |
| 858-1055, gnl|hg17|chr1 (1289028-1289231) | |
| 858-1055, gnl|Hg17|chr1 (1289243-1289033) | |
| 858-1055, gnl|loxAfr1|scaffold_44901 (8416-8213) | |
| 858-1055, gnl|mm7|chr4 (154876538-154876335) | |
| 858-1055, gnl|Mm7|chr4 (154876337-154876531) | |
| 858-1055, gnl|monDom2|scaffold_196 (9343-9546) | |
| 858-1055, gnl|oryCun1|scaffold_114638 (836-1039) | |
| 858-1055, gnl|panTro1|chr1 (1177581-1177785) | |
| 858-1055, gnl|rheMac2|chr1 (4381992-4382195) | |
| 858-1055, gnl|rn3|chr5 (172755322-172755121) | |
| 858-1055, gnl|tetNig1|chr9 (10279498-10279301) | |
| 858-1055, gnl|xenTro1|scaffold_414 (459658-459461) | |
| 1227-1391, gnl|bosTau2|chr16 (37928905-37929069) | |
| 1227-1391, gnl|canFam2|chr5 (59487926-59488100) | |
| 1227-1391, gnl|danRer3|chr6 (19791408-19791239) | |
| 1227-1391, gnl|echTel1|scaffold_301770 (5598-5424) | |
| 1227-1391, gnl|galGal2|chr21 (2242365-2242191) | |
| 1227-1391, gnl|hg17|chr1 (1288086-1288260) | |
| 1227-1391, gnl|Hg17|chr1 (1288253-1288089) | |
| 1227-1391, gnl|loxAfr1|scaffold_44901 (9324-9150) | |
| 1227-1391, gnl|mm7|chr4 (154877315-154877141) | |
| 1227-1391, gnl|Mm7|chr4 (154877146-154877310) | |
| 1227-1391, gnl|monDom2|scaffold_196 (3626-3800) | |
| 1227-1391, gnl|oryCun1|scaffold_114638 (28-201) | |
| 1227-1391, gnl|panTro1|chr1 (1176630-1176804) | |
| 1227-1391, gnl|rheMac2|chr1 (4381004-4381178) | |
| 1227-1391, gnl|rn3|chr5 (172756104-172755930) | |
| 1227-1391, gnl|tetNig1|chr9 (10280063-10279895) | |
| 1227-1391, gnl|xenTro1|scaffold_414 (461568-461394) | |
| 1394-1499, gnl|bosTau2|chr16 (37929165-37929270) | |
| 1394-1499, gnl|canFam2|chr5 (59487680-59487787) | |
| 1394-1499, gnl|danRer3|chr6 (19793087-19792980) | |
| 1394-1499, gnl|echTel1|scaffold_301770 (5803-5696) | |
| 1394-1499, gnl|galGal2|chr21 (2242766-2242659) | |
| 1394-1499, gnl|hg17|chr1 (1287900-1288007) | |
| 1394-1499, gnl|Hg17|chr1 (1288000-1287895) | |
| 1394-1499, gnl|loxAfr1|scaffold_44901 (9541-9434) | |
| 1394-1499, gnl|mm7|chr4 (154877502-154877395) | |
| 1394-1499, gnl|Mm7|chr4 (154877400-154877505) | |
| 1394-1499, gnl|monDom2|scaffold_196 (3035-3142) | |
| 1394-1499, gnl|panTro1|chr1 (1176454-1176551) | |
| 1394-1499, gnl|rheMac2|chr1 (4380820-4380927) | |
| 1394-1499, gnl|rn3|chr5 (172756291-172756184) | |
| 1394-1499, gnl|tetNig1|chr9 (10280239-10280134) | |
| 1556-1703, gnl|bosTau2|chr16 (37929495-37929641) | |
| 1556-1703, gnl|Hg17|chr1 (1287675-1287529) | |
| 1556-1703, gnl|Mm7|chr4 (154877722-154877868) | |
| 1831-2172, gnl|bosTau2|chr16 (37929940-37930276) | |
| 1831-2172, gnl|Hg17|chr1 (1287233-1286886) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 521-625, gnl|bosTau2|chr16 (37926632-37926736) | |
| 521-625, gnl|canFam2|chr5 (59490584-59490715) | |
| 521-625, gnl|danRer3|chr6 (19784658-19784552) | |
| 521-625, gnl|echTel1|scaffold_301770 (3752-3620) | |
| 521-625, gnl|fr1|chrUn (232480802-232480686) | |
| 521-625, gnl|galGal2|chr21 (2239310-2239203) | |
| 521-625, gnl|hg17|chr1 (1290818-1290949) | |
| 521-625, gnl|Hg17|chr1 (1290926-1290822) | |
| 521-625, gnl|mm7|chr4 (154874745-154874615) | |
| 521-625, gnl|Mm7|chr4 (154874635-154874739) | |
| 521-625, gnl|monDom2|scaffold_196 (13150-13291) | |
| 521-625, gnl|panTro1|chr1 (1179460-1179591) | |
| 521-625, gnl|rheMac2|chr1 (4383688-4383819) | |
| 521-625, gnl|rn3|chr5 (172753740-172753610) | |
| 521-625, gnl|tetNig1|chr9 (10278702-10278565) | |
| 521-625, gnl|xenTro1|scaffold_414 (455494-455376) | |
| 642-804, gnl|bosTau2|chr16 (37927094-37927257) | |
| 642-804, gnl|Hg17|chr1 (1290285-1290120) | |
| 642-804, gnl|Mm7|chr4 (154875089-154875252) | |
| 858-1055, gnl|bosTau2|chr16 (37927887-37928084) | |
| 858-1055, gnl|canFam2|chr5 (59488984-59489187) | |
| 858-1055, gnl|danRer3|chr6 (19787072-19786872) | |
| 858-1055, gnl|echTel1|scaffold_301770 (4825-4622) | |
| 858-1055, gnl|galGal2|chr21 (2241111-2240913) | |
| 858-1055, gnl|hg17|chr1 (1289028-1289231) | |
| 858-1055, gnl|Hg17|chr1 (1289243-1289033) | |
| 858-1055, gnl|loxAfr1|scaffold_44901 (8416-8213) | |
| 858-1055, gnl|mm7|chr4 (154876538-154876335) | |
| 858-1055, gnl|Mm7|chr4 (154876337-154876531) | |
| 858-1055, gnl|monDom2|scaffold_196 (9343-9546) | |
| 858-1055, gnl|oryCun1|scaffold_114638 (836-1039) | |
| 858-1055, gnl|panTro1|chr1 (1177581-1177785) | |
| 858-1055, gnl|rheMac2|chr1 (4381992-4382195) | |
| 858-1055, gnl|rn3|chr5 (172755322-172755121) | |
| 858-1055, gnl|tetNig1|chr9 (10279498-10279301) | |
| 858-1055, gnl|xenTro1|scaffold_414 (459658-459461) | |
| 1227-1391, gnl|bosTau2|chr16 (37928905-37929069) | |
| 1227-1391, gnl|canFam2|chr5 (59487926-59488100) | |
| 1227-1391, gnl|danRer3|chr6 (19791408-19791239) | |
| 1227-1391, gnl|echTel1|scaffold_301770 (5598-5424) | |
| 1227-1391, gnl|galGal2|chr21 (2242365-2242191) | |
| 1227-1391, gnl|hg17|chr1 (1288086-1288260) | |
| 1227-1391, gnl|Hg17|chr1 (1288253-1288089) | |
| 1227-1391, gnl|loxAfr1|scaffold_44901 (9324-9150) | |
| 1227-1391, gnl|mm7|chr4 (154877315-154877141) | |
| 1227-1391, gnl|Mm7|chr4 (154877146-154877310) | |
| 1227-1391, gnl|monDom2|scaffold_196 (3626-3800) | |
| 1227-1391, gnl|oryCun1|scaffold_114638 (28-201) | |
| 1227-1391, gnl|panTro1|chr1 (1176630-1176804) | |
| 1227-1391, gnl|rheMac2|chr1 (4381004-4381178) | |
| 1227-1391, gnl|rn3|chr5 (172756104-172755930) | |
| 1227-1391, gnl|tetNig1|chr9 (10280063-10279895) | |
| 1227-1391, gnl|xenTro1|scaffold_414 (461568-461394) | |
| 1394-1499, gnl|bosTau2|chr16 (37929165-37929270) | |
| 1394-1499, gnl|canFam2|chr5 (59487680-59487787) | |
| 1394-1499, gnl|danRer3|chr6 (19793087-19792980) | |
| 1394-1499, gnl|echTel1|scaffold_301770 (5803-5696) | |
| 1394-1499, gnl|galGal2|chr21 (2242766-2242659) | |
| 1394-1499, gnl|hg17|chr1 (1287900-1288007) | |
| 1394-1499, gnl|Hg17|chr1 (1288000-1287895) | |
| 1394-1499, gnl|loxAfr1|scaffold_44901 (9541-9434) | |
| 1394-1499, gnl|mm7|chr4 (154877502-154877395) | |
| 1394-1499, gnl|Mm7|chr4 (154877400-154877505) | |
| 1394-1499, gnl|monDom2|scaffold_196 (3035-3142) | |
| 1394-1499, gnl|panTro1|chr1 (1176454-1176551) | |
| 1394-1499, gnl|rheMac2|chr1 (4380820-4380927) | |
| 1394-1499, gnl|rn3|chr5 (172756291-172756184) | |
| 1394-1499, gnl|tetNig1|chr9 (10280239-10280134) | |
| 1556-1703, gnl|bosTau2|chr16 (37929495-37929641) | |
| 1556-1703, gnl|Hg17|chr1 (1287675-1287529) | |
| 1556-1703, gnl|Mm7|chr4 (154877722-154877868) | |
| 1831-2172, gnl|bosTau2|chr16 (37929940-37930276) | |
| 1831-2172, gnl|Hg17|chr1 (1287233-1286886) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cly (0.241284) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.241284) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) |