Non-Coding RNA Search

Ss1.1-Pig4-TMW8059O17.5

Sequence:


               
               TAAATTGACTTCAATTAACAGTAGATTTTGGGTAGGAAAAGGTTTGATTTGTGGCATAAG
GCATTGCTCTTGTAGCTATTGCCAGTTTAAAAGGAGGTGAATTATAAACTTTTTTTAAAA
AGAAAAATGAAAGAATTTGAGAGAAAGTAAAACTAGATGTAGTATTGAGGCTTTGTTTGG
ACAGGTGGTACCTGATAGTTATTGGGTGTTGGAAAGTCTGTAGTCATTGGGTTGGGTGAA
AGGTACCATAATCTTTGCAAATTGTATATAATTGTTATTTTTGTCTTTTAAAATATTTGT
ACATATATGGTCATTGACATGGCCACATTCGAAGTGTGTAAATCAATAAAATAGAAAAGA
ACAAGTGGATTTTCACTATTTTAAAGTGTTATATGCATTAGAGGGGCTGCGTAATCATCC
AGCTACCATCGCTGTCAACAAAACAGATGGAGGGAGAGTTGTTCCCGTTGTGGCTGGCAG
AGCTCTGTTTAAATTGTAAATATGCTTTTTCTCATGCTTTGAGACAAGACGCATTATTTG
TAGGGAATCACATGCTGTTAAAGAAAACACCTCTTTATGACTCACTTTCTAGAATTTATG
ATTTAACTTGCTGTGTTGGAATTTTTGCTTTACCTTTATAGGAACAACAAAAAGTTAATA
CGGAAACATGCTTTGCTGGTTTTCTGTTGTCAAGTAATGATAATGCACCATGATGTTTTA
TATTACCATTCAGAAAAAAATGCCTTATTTTTTGTTAACTTTATTTCTGTTAATAATATT
TTGCTTGCCTCTGGCATGTCCCAAGGAATGTATTTGGTTTTGATTACACATTAATTCTTT
GTAATAAATTTGATTCATGGAAAAGCTTTCTATTTTTTTTAAATGTCTCATAAGCAGTTG
ATTGACTAATCATCTTTGTAGCTAAGCCCTTAAATCCTTTAACAAAAGATAACCTTTGGA
TTGATCACATTGTTTGACCTAGTATGTCTTGTGGACAAAAGTTATAGTTATTTGGTATCT
GAAAGTATGTTTGTGATGTGAATCTGTCCATTGACACTCATGGAAAAACTCACGAATCGT
TTTAAATAAACATTAATTCAATGATGCTATTCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATTGACTTCAATTAACAGTAGATTTTGGGTAGGAAAAGGTTTGATTTGTGGCATAAG
GCATTGCTCTTGTAGCTATTGCCAGTTTAAAAGGAGGTGAATTATAAACTTTTTTTAAAA
AGAAAAATGAAAGAATTTGAGAGAAAGTAAAACTAGATGTAGTATTGAGGCTTTGTTTGG
ACAGGTGGTACCTGATAGTTATTGGGTGTTGGAAAGTCTGTAGTCATTGGGTTGGGTGAA
AGGTACCATAATCTTTGCAAATTGTATATAATTGTTATTTTTGTCTTTTAAAATATTTGT
ACATATATGGTCATTGACATGGCCACATTCGAAGTGTGTAAATCAATAAAATAGAAAAGA
ACAAGTGGATTTTCACTATTTTAAAGTGTTATATGCATTAGAGGGGCTGCGTAATCATCC
AGCTACCATCGCTGTCAACAAAACAGATGGAGGGAGAGTTGTTCCCGTTGTGGCTGGCAG
AGCTCTGTTTAAATTGTAAATATGCTTTTTCTCATGCTTTGAGACAAGACGCATTATTTG
TAGGGAATCACATGCTGTTAAAGAAAACACCTCTTTATGACTCACTTTCTAGAATTTATG
ATTTAACTTGCTGTGTTGGAATTTTTGCTTTACCTTTATAGGAACAACAAAAAGTTAATA
CGGAAACATGCTTTGCTGGTTTTCTGTTGTCAAGTAATGATAATGCACCATGATGTTTTA
TATTACCATTCAGAAAAAAATGCCTTATTTTTTGTTAACTTTATTTCTGTTAATAATATT
TTGCTTGCCTCTGGCATGTCCCAAGGAATGTATTTGGTTTTGATTACACATTAATTCTTT
GTAATAAATTTGATTCATGGAAAAGCTTTCTATTTTTTTTAAATGTCTCATAAGCAGTTG
ATTGACTAATCATCTTTGTAGCTAAGCCCTTAAATCCTTTAACAAAAGATAACCTTTGGA
TTGATCACATTGTTTGACCTAGTATGTCTTGTGGACAAAAGTTATAGTTATTTGGTATCT
GAAAGTATGTTTGTGATGTGAATCTGTCCATTGACACTCATGGAAAAACTCACGAATCGT
TTTAAATAAACATTAATTCAATGATGCTATTCTTCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-399, gnl|bosTau2|chr11 (21553093-21552684)
               

               
               2-399, gnl|Hg17|chr3 (103061157-103061548)
               

               
               2-399, gnl|Mm7|chr16 (55653576-55653148)
               


               
               697-1114, gnl|bosTau2|chr11 (21552512-21552088)
               

               
               697-1114, gnl|Hg17|chr3 (103062161-103062567)
               

               
               697-1114, gnl|Mm7|chr16 (55652867-55652436)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-399, gnl|bosTau2|chr11 (21553093-21552684)
               

               
               2-399, gnl|Hg17|chr3 (103061157-103061548)
               

               
               2-399, gnl|Mm7|chr16 (55653576-55653148)
               


               
               697-1114, gnl|bosTau2|chr11 (21552512-21552088)
               

               
               697-1114, gnl|Hg17|chr3 (103062161-103062567)
               

               
               697-1114, gnl|Mm7|chr16 (55652867-55652436)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               tra (1.35401)
               

               
               rec (0.692281)
               

               
               gul (0.532765)
               

               
               sin (0.524843)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               aor (0.390549)
               

               
               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (1.35401)
               

               
               rec (0.692281)
               

               
               gul (0.532765)
               

               
               sin (0.524843)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               aor (0.390549)
               

               
               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	2-399, gnl\|bosTau2\|chr11 (21553093-21552684)
	2-399, gnl\|Hg17\|chr3 (103061157-103061548)
	2-399, gnl\|Mm7\|chr16 (55653576-55653148)

	697-1114, gnl\|bosTau2\|chr11 (21552512-21552088)
	697-1114, gnl\|Hg17\|chr3 (103062161-103062567)
	697-1114, gnl\|Mm7\|chr16 (55652867-55652436)

	tra (1.35401)
	rec (0.692281)
	gul (0.532765)
	sin (0.524843)
	ski (0.440205)
	liv (0.438853)
	aor (0.390549)
	spl (0.286369)
	mgp (0.230681)
	nlu (0.191681)
	nep (0.183925)
	duo (0.172801)
	cut (0.169924)
	mga (0.160205)
	eli (0.151814)
	lin (0.145603)
	lnt (0.142308)
	cst (0.140036)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	clu (0.119646)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)