Non-Coding RNA Search

Ss1.1-Pig4-TMW8059O19.3

Sequence:


               
               CTCCAGGCCGGACTGGGCGAGCTGGACCCTACCCTCCAGTCTACCAGCTCCCGTCCCCGA
GGCTTGGCCCCTAGTCCACAGAGGGGACCGTGCACAAACCTATTTATTAACTTGACGAGC
ACAAGTGGCTCTGTCCATTCCTCTGTCTGTCCGTCCAGCCTCCCCTGCGCTGTTCTTGCC
TCGGCCAGCCTTACAGGAGCTTTGGGGCTCTCCTGCGGCGCCCCTCCCCCCGATACTGAG
CCAGGAATCCTAGGCTGGGGGTCACCTCGAGTTCTGACTCCCAGGACAGGTCCACCACCC
CCACTGTGGGACCCAGCATCCCTCCTGATGGGCCCCTCTGCCCCCCGCGGCTAGGGGCCC
CGAGCATGTGAGGTCTGCGTGTGTGTATGAATGTTGCGGGGAGCAGCTGGAGGCAACGCT
CAGCTGGCCTGGCCCACCAGGGAGGGGGCTCTGGGGAGCTGCTGCCCTCCCACGAGGCCA
GGCAGAGAGAGTGTGCGTGTGGGTGTGTACACACAGCCTAGGCTCCCCACTGACCCCGTC
CAGGAAGTCATTGCTGCAGCCCGGCCTCTCCTGCTGCACCTTTGGCAGACACCCCCCCCC
CAATCCAGGGCTGGGCATGGGGGAGGGCAGTCACGAGGACCAGTATGGAGCCTGAGGGCA
TTTGCTCTGCTCGCAGGGGCACCAGGAGCTGTCCCTTCAGTCTCCCCAGGGCCCACTCTG
CTCTCTGGGCCTCTGCACAAGGCCCCCGACCACACTTAGTAAAACTCTGCCCTCCCAGCC
CCCACCCCCCCTTGATGTTGTGAGTCGAGGCAGGCTCCCTGCCCTGCCCCGCCCCCAGCC
ACGTGATCGTGTTGGTGATTGATGCTGACGTGCTGGTGCTGTGTCCCCCACCCGGGCCCC
TCTTCAGTGGCCCCTTCCTGGAGACACTACCTGGGGCTCAGGCCTGGGCCCCCAGTTCAC
GGTTGTTCCTGGGAGCTGCTCTCCCGCTACATCTGTACCTTGGAAGCTGCCGCTGCTGCT
TACAGAATTCTATTTTTTCTTTCGAAGAGTTTTAAGAAGTTGTAACTTTTTGTGTCTGGT
CATGTAAGGAGATAAATAAATATTCTACGTAGATGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAGGCCGGACTGGGCGAGCTGGACCCTACCCTCCAGTCTACCAGCTCCCGTCCCCGA
GGCTTGGCCCCTAGTCCACAGAGGGGACCGTGCACAAACCTATTTATTAACTTGACGAGC
ACAAGTGGCTCTGTCCATTCCTCTGTCTGTCCGTCCAGCCTCCCCTGCGCTGTTCTTGCC
TCGGCCAGCCTTACAGGAGCTTTGGGGCTCTCCTGCGGCGCCCCTCCCCCCGATACTGAG
CCAGGAATCCTAGGCTGGGGGTCACCTCGAGTTCTGACTCCCAGGACAGGTCCACCACCC
CCACTGTGGGACCCAGCATCCCTCCTGATGGGCCCCTCTGCCCCCCGCGGCTAGGGGCCC
CGAGCATGTGAGGTCTGCGTGTGTGTATGAATGTTGCGGGGAGCAGCTGGAGGCAACGCT
CAGCTGGCCTGGCCCACCAGGGAGGGGGCTCTGGGGAGCTGCTGCCCTCCCACGAGGCCA
GGCAGAGAGAGTGTGCGTGTGGGTGTGTACACACAGCCTAGGCTCCCCACTGACCCCGTC
CAGGAAGTCATTGCTGCAGCCCGGCCTCTCCTGCTGCACCTTTGGCAGACACCCCCCCCC
CAATCCAGGGCTGGGCATGGGGGAGGGCAGTCACGAGGACCAGTATGGAGCCTGAGGGCA
TTTGCTCTGCTCGCAGGGGCACCAGGAGCTGTCCCTTCAGTCTCCCCAGGGCCCACTCTG
CTCTCTGGGCCTCTGCACAAGGCCCCCGACCACACTTAGTAAAACTCTGCCCTCCCAGCC
CCCACCCCCCCTTGATGTTGTGAGTCGAGGCAGGCTCCCTGCCCTGCCCCGCCCCCAGCC
ACGTGATCGTGTTGGTGATTGATGCTGACGTGCTGGTGCTGTGTCCCCCACCCGGGCCCC
TCTTCAGTGGCCCCTTCCTGGAGACACTACCTGGGGCTCAGGCCTGGGCCCCCAGTTCAC
GGTTGTTCCTGGGAGCTGCTCTCCCGCTACATCTGTACCTTGGAAGCTGCCGCTGCTGCT
TACAGAATTCTATTTTTTCTTTCGAAGAGTTTTAAGAAGTTGTAACTTTTTGTGTCTGGT
CATGTAAGGAGATAAATAAATATTCTACGTAGATGCAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               176-293, - strand, RNAz p=0.818371
               

               
               367-480, - strand, RNAz p=0.974937
               

               
               671-795, - strand, RNAz p=0.998766

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-293, - strand, RNAz p=0.818371
               

               
               367-480, - strand, RNAz p=0.974937
               

               
               671-795, - strand, RNAz p=0.998766

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               427-488, + strand, RNAmicro p=0.951514

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               427-488, + strand, RNAmicro p=0.951514

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-317, gnl|bosTau2|chr29 (44795622-44795317)
               

               
               3-317, gnl|Hg17|chr11 (781599-781267)
               

               
               3-317, gnl|Mm7|chr7 (137848044-137847706)
               


               
               367-1116, gnl|bosTau2|chr29 (44795294-44794567)
               

               
               367-1116, gnl|Hg17|chr11 (781229-780472)
               

               
               367-1116, gnl|Mm7|chr7 (137847686-137847010)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-317, gnl|bosTau2|chr29 (44795622-44795317)
               

               
               3-317, gnl|Hg17|chr11 (781599-781267)
               

               
               3-317, gnl|Mm7|chr7 (137848044-137847706)
               


               
               367-1116, gnl|bosTau2|chr29 (44795294-44794567)
               

               
               367-1116, gnl|Hg17|chr11 (781229-780472)
               

               
               367-1116, gnl|Mm7|chr7 (137847686-137847010)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               amn (0.417711)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	176-293, - strand, RNAz p=0.818371
	367-480, - strand, RNAz p=0.974937
	671-795, - strand, RNAz p=0.998766

	3-317, gnl\|bosTau2\|chr29 (44795622-44795317)
	3-317, gnl\|Hg17\|chr11 (781599-781267)
	3-317, gnl\|Mm7\|chr7 (137848044-137847706)

	367-1116, gnl\|bosTau2\|chr29 (44795294-44794567)
	367-1116, gnl\|Hg17\|chr11 (781229-780472)
	367-1116, gnl\|Mm7\|chr7 (137847686-137847010)

	amn (0.417711)
	ece (0.229305)
	fbs (0.175346)
	nco (0.161734)
	pty (0.142714)
	pla (0.133672)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)