Non-Coding RNA Search

Ss1.1-Pig4-TMW8059O21.3

Sequence:


               
               GCAGGTGGCCTGGGCATTAATTTGACTGCAGCTGATACCGTTATCATTTATGATAGTGAT
TGGAATCCCCAGTCTGATCTTCAGGCCCAGGATAGATGTCATAGAATTGGTCAAACAAAG
CCAGTTGTTGTATATCGTCTTGTTACAGCAAATACTATTGATCAGAAAATTGTGGAAAGA
GCAGCTGCTAAAAGAAAATTGGAAAAGTTGATCATCCACAAAAATCATTTTAAAGGTGGT
CAGTCTGGATTAAATCAATCTAAGAACTTTTTAGACCCTAAGGAATTAATGGAATTATTA
AAATCTAGAGATTATGAAAGGGAAGTAAAAGGATCAAGAGAGAAAGTTATTAGTGATAAA
GATCTGGAGTTGTTGTTAGATCGAAGTGATCTCATTGATCAAATGAATGCCTCGGGACCA
ATTAAAGAGAAGATGGGGATTTTCAAGATACTGGAAAATTCTGAAGATTCCAGTCCTGAT
TGTTTGTTTTAAATTGGAGCTAAAGAATGTCTTCAAAAGGTTCTTGTTTACATCCTGTGA
TTTACCTGTTCTGGTTTTGAAATCCAGACTTTTCAGTCTTCTTTTTTGATTATATCAGTT
TACATAATATAATTTTGTACCATTGCATAATTTTCTGAGCCTTATTAAGAACAAAGATAT
ATTTGTAGGAAATTTAGATTTTCAGTTAATTTTTCAGACTGTAGTACTCTTGGGTACAGA
CTGATGTGTACTTAACCACTACCGGATTTATACAGTCTTCCTGTGGAAGTTTAATATCTT
TCCCCCACCCCGCTTTTAGCAGTACAGTTTATGGGTTTTTGGTACTTCAGTTATGGAGTA
GGCTTTAATGGGGGAAAGATTGGGATTATACTTTCTATTGTTTAATAAAAAATGGTTTGA
TTTTAAGGTCTATTTCTATAAAATAGTTTGCCAAATAAATGTTTGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGTGGCCTGGGCATTAATTTGACTGCAGCTGATACCGTTATCATTTATGATAGTGAT
TGGAATCCCCAGTCTGATCTTCAGGCCCAGGATAGATGTCATAGAATTGGTCAAACAAAG
CCAGTTGTTGTATATCGTCTTGTTACAGCAAATACTATTGATCAGAAAATTGTGGAAAGA
GCAGCTGCTAAAAGAAAATTGGAAAAGTTGATCATCCACAAAAATCATTTTAAAGGTGGT
CAGTCTGGATTAAATCAATCTAAGAACTTTTTAGACCCTAAGGAATTAATGGAATTATTA
AAATCTAGAGATTATGAAAGGGAAGTAAAAGGATCAAGAGAGAAAGTTATTAGTGATAAA
GATCTGGAGTTGTTGTTAGATCGAAGTGATCTCATTGATCAAATGAATGCCTCGGGACCA
ATTAAAGAGAAGATGGGGATTTTCAAGATACTGGAAAATTCTGAAGATTCCAGTCCTGAT
TGTTTGTTTTAAATTGGAGCTAAAGAATGTCTTCAAAAGGTTCTTGTTTACATCCTGTGA
TTTACCTGTTCTGGTTTTGAAATCCAGACTTTTCAGTCTTCTTTTTTGATTATATCAGTT
TACATAATATAATTTTGTACCATTGCATAATTTTCTGAGCCTTATTAAGAACAAAGATAT
ATTTGTAGGAAATTTAGATTTTCAGTTAATTTTTCAGACTGTAGTACTCTTGGGTACAGA
CTGATGTGTACTTAACCACTACCGGATTTATACAGTCTTCCTGTGGAAGTTTAATATCTT
TCCCCCACCCCGCTTTTAGCAGTACAGTTTATGGGTTTTTGGTACTTCAGTTATGGAGTA
GGCTTTAATGGGGGAAAGATTGGGATTATACTTTCTATTGTTTAATAAAAAATGGTTTGA
TTTTAAGGTCTATTTCTATAAAATAGTTTGCCAAATAAATGTTTGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32425420|gb|AAH15477.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32425420|gb|AAH15477.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               102-876, + strand, RNAz p=0.946054

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-876, + strand, RNAz p=0.946054

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB102717, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB102717, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               63-223, gnl|bosTau2|chr18 (24671267-24671427)
               

               
               63-223, gnl|Hg17|chr10 (96344441-96344601)
               

               
               63-223, gnl|Mm7|chr19 (38660352-38660512)
               


               
               390-948, gnl|bosTau2|chr18 (24679811-24680368)
               

               
               390-948, gnl|canFam2|chr28 (11702928-11703542)
               

               
               390-948, gnl|dasNov1|scaffold_23852 (1745-2333)
               

               
               390-948, gnl|echTel1|scaffold_293186 (35859-35281)
               

               
               390-948, gnl|galGal2|chr6 (15724453-15723903)
               

               
               390-948, gnl|hg17|chr10 (96351236-96351834)
               

               
               390-948, gnl|Hg17|chr10 (96351267-96351838)
               

               
               390-948, gnl|loxAfr1|scaffold_16619 (35191-35792)
               

               
               390-948, gnl|mm7|chr19 (38668378-38668953)
               

               
               390-948, gnl|Mm7|chr19 (38668410-38668957)
               

               
               390-948, gnl|monDom2|scaffold_14 (27992928-27992302)
               

               
               390-948, gnl|panTro1|chr8 (98108738-98109336)
               

               
               390-948, gnl|rheMac2|chr9 (94071544-94072123)
               

               
               390-948, gnl|rn3|chr1 (243358320-243358902)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-223, gnl|bosTau2|chr18 (24671267-24671427)
               

               
               63-223, gnl|Hg17|chr10 (96344441-96344601)
               

               
               63-223, gnl|Mm7|chr19 (38660352-38660512)
               


               
               390-948, gnl|bosTau2|chr18 (24679811-24680368)
               

               
               390-948, gnl|canFam2|chr28 (11702928-11703542)
               

               
               390-948, gnl|dasNov1|scaffold_23852 (1745-2333)
               

               
               390-948, gnl|echTel1|scaffold_293186 (35859-35281)
               

               
               390-948, gnl|galGal2|chr6 (15724453-15723903)
               

               
               390-948, gnl|hg17|chr10 (96351236-96351834)
               

               
               390-948, gnl|Hg17|chr10 (96351267-96351838)
               

               
               390-948, gnl|loxAfr1|scaffold_16619 (35191-35792)
               

               
               390-948, gnl|mm7|chr19 (38668378-38668953)
               

               
               390-948, gnl|Mm7|chr19 (38668410-38668957)
               

               
               390-948, gnl|monDom2|scaffold_14 (27992928-27992302)
               

               
               390-948, gnl|panTro1|chr8 (98108738-98109336)
               

               
               390-948, gnl|rheMac2|chr9 (94071544-94072123)
               

               
               390-948, gnl|rn3|chr1 (243358320-243358902)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               amn (0.417711)
               

               
               ill (0.175593)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ill (0.175593)
               

               
               eje (0.0988338)

	63-223, gnl\|bosTau2\|chr18 (24671267-24671427)
	63-223, gnl\|Hg17\|chr10 (96344441-96344601)
	63-223, gnl\|Mm7\|chr19 (38660352-38660512)

	390-948, gnl\|bosTau2\|chr18 (24679811-24680368)
	390-948, gnl\|canFam2\|chr28 (11702928-11703542)
	390-948, gnl\|dasNov1\|scaffold_23852 (1745-2333)
	390-948, gnl\|echTel1\|scaffold_293186 (35859-35281)
	390-948, gnl\|galGal2\|chr6 (15724453-15723903)
	390-948, gnl\|hg17\|chr10 (96351236-96351834)
	390-948, gnl\|Hg17\|chr10 (96351267-96351838)
	390-948, gnl\|loxAfr1\|scaffold_16619 (35191-35792)
	390-948, gnl\|mm7\|chr19 (38668378-38668953)
	390-948, gnl\|Mm7\|chr19 (38668410-38668957)
	390-948, gnl\|monDom2\|scaffold_14 (27992928-27992302)
	390-948, gnl\|panTro1\|chr8 (98108738-98109336)
	390-948, gnl\|rheMac2\|chr9 (94071544-94072123)
	390-948, gnl\|rn3\|chr1 (243358320-243358902)