Non-Coding RNA Search

Ss1.1-Pig4-TMW8059P01.5

Sequence:


               
               CAGAGACGGAGGAGGCAGAGCTCCCACCCAGAGTGCGCGCTTCACTTTTTCGTCCAATCT
TTGTTTTTGATAAGCAGGATTTTCTCCCCCCCAGCTTTTTTTTTTTTTTTTTTTAATGAT
CTTTGTAGTTGATTTGTCTAAACTGTGGCTATTGTGTATTCTTTGAATATAATCACTTGT
AAAAATTGTCACCGCTGCAAGCTATTTCTTTTACCCACGTTGAGGAGACCTTGTGGGTTT
TGGGGTCTCGATAGTGACTCCAAGTGCGGAGTAGAGAAAAGCCCAAGCAGAGGCTTGGGT
GCCACGATGGCCGCAGTCAGTTTTATGATTCTGCTTCTGTGTGTCCTTTGGTAAAGTGAC
TTAACAATATACATTCCTCATAAATAAAAAAAAAAGAAAAATCTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGACGGAGGAGGCAGAGCTCCCACCCAGAGTGCGCGCTTCACTTTTTCGTCCAATCT
TTGTTTTTGATAAGCAGGATTTTCTCCCCCCCAGCTTTTTTTTTTTTTTTTTTTAATGAT
CTTTGTAGTTGATTTGTCTAAACTGTGGCTATTGTGTATTCTTTGAATATAATCACTTGT
AAAAATTGTCACCGCTGCAAGCTATTTCTTTTACCCACGTTGAGGAGACCTTGTGGGTTT
TGGGGTCTCGATAGTGACTCCAAGTGCGGAGTAGAGAAAAGCCCAAGCAGAGGCTTGGGT
GCCACGATGGCCGCAGTCAGTTTTATGATTCTGCTTCTGTGTGTCCTTTGGTAAAGTGAC
TTAACAATATACATTCCTCATAAATAAAAAAAAAAGAAAAATCTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               181-329, - strand, RNAz p=0.979375

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-329, - strand, RNAz p=0.979375

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-398, gnl|bosTau2|chr3 (8643767-8643397)
               

               
               23-398, gnl|Hg17|chr1 (151367988-151367622)
               

               
               23-398, gnl|Mm7|chr3 (89879623-89879943)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-398, gnl|bosTau2|chr3 (8643767-8643397)
               

               
               23-398, gnl|Hg17|chr1 (151367988-151367622)
               

               
               23-398, gnl|Mm7|chr3 (89879623-89879943)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)

	23-398, gnl\|bosTau2\|chr3 (8643767-8643397)
	23-398, gnl\|Hg17\|chr1 (151367988-151367622)
	23-398, gnl\|Mm7\|chr3 (89879623-89879943)

	elu (0.385356)
	fce (0.271592)
	cbe (0.239234)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)