Non-Coding RNA Search

Ss1.1-Pig4-TMW8059P02.5

Sequence:


               
               GCCTATTGAGATGACTGTAAAAAAGACCTTATCCAATTTCCGAAGGACGCACCATGACAA
TTGGCAAGAACACAAACAGCAATTCACTGATGACCAGCTGCTTGTTCTCACCGATCTCCT
TGTGTCACCCTGCTATTATGCATAGAAAGATGAGTAGTCCTCACTTCAAGCTCTTTTCAT
CAAAAATTCCAGATCCTCAGGTACCATCTGTGGTGGCTTTCGGCCGGTTTTAAAAGTCTG
CCTCTGTTGAGCTCTCATCATTTTGGTGGTTTCTGTGTTTGGTCTCATTAGTCTGTGTTT
CACAGGTTCTCAGCTGCCATTTGATTTCCTAACTTGTCCGAAAGTGTTTCCAGGATATTG
ATCACTTTTTCTTTGAGGCATCTGACAAAGCCACAATGTCTCAAACTAGAAATAATTACC
CAATATGATCATGGCATCCAAGACCAGACAGAGTCTAGGAACTCATTATGAAACGGTATA
CTTGGAATGGAGATTGCCCATCTGTAATATAGGTCCTGTCATTTCATTCATCTCAGATTG
ATTTGAATTCTTTCCACATGGCTGTTGGGTTTAGAGGGTAGTAGGGCTGTGAGCCATAAA
TCTCAAGCCTTGAGAACCTTGGGTCTGGAGAGCCATGAAGAGGAAAGGAAAAGAGAGCAA
GTCTCAAACCCAGCAAAGGACCTGATGGATTGCTTGACCAAGACACAGAAGTGAAGTCTG
TGTCCACATGTTTCCCACAGACTGGAGTTTTTGGTGCTGAATAGAAGAGCATTTGCTGAA
AAACTGGGGTTTGGTGAATAAATTTTTGATTGATTGTTCTGTGTGTATACAATGTGTGAT
TTTGAAAATAAACAGCAACAACAATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTATTGAGATGACTGTAAAAAAGACCTTATCCAATTTCCGAAGGACGCACCATGACAA
TTGGCAAGAACACAAACAGCAATTCACTGATGACCAGCTGCTTGTTCTCACCGATCTCCT
TGTGTCACCCTGCTATTATGCATAGAAAGATGAGTAGTCCTCACTTCAAGCTCTTTTCAT
CAAAAATTCCAGATCCTCAGGTACCATCTGTGGTGGCTTTCGGCCGGTTTTAAAAGTCTG
CCTCTGTTGAGCTCTCATCATTTTGGTGGTTTCTGTGTTTGGTCTCATTAGTCTGTGTTT
CACAGGTTCTCAGCTGCCATTTGATTTCCTAACTTGTCCGAAAGTGTTTCCAGGATATTG
ATCACTTTTTCTTTGAGGCATCTGACAAAGCCACAATGTCTCAAACTAGAAATAATTACC
CAATATGATCATGGCATCCAAGACCAGACAGAGTCTAGGAACTCATTATGAAACGGTATA
CTTGGAATGGAGATTGCCCATCTGTAATATAGGTCCTGTCATTTCATTCATCTCAGATTG
ATTTGAATTCTTTCCACATGGCTGTTGGGTTTAGAGGGTAGTAGGGCTGTGAGCCATAAA
TCTCAAGCCTTGAGAACCTTGGGTCTGGAGAGCCATGAAGAGGAAAGGAAAAGAGAGCAA
GTCTCAAACCCAGCAAAGGACCTGATGGATTGCTTGACCAAGACACAGAAGTGAAGTCTG
TGTCCACATGTTTCCCACAGACTGGAGTTTTTGGTGCTGAATAGAAGAGCATTTGCTGAA
AAACTGGGGTTTGGTGAATAAATTTTTGATTGATTGTTCTGTGTGTATACAATGTGTGAT
TTTGAAAATAAACAGCAACAACAATAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               9-154, - strand, RNAz p=0.967371

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-154, - strand, RNAz p=0.967371

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-154, gnl|bosTau2|chr11 (25667614-25667469)
               

               
               9-154, gnl|Hg17|chr2 (54005013-54004868)
               

               
               9-154, gnl|Mm7|chr11 (30830383-30830528)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-154, gnl|bosTau2|chr11 (25667614-25667469)
               

               
               9-154, gnl|Hg17|chr2 (54005013-54004868)
               

               
               9-154, gnl|Mm7|chr11 (30830383-30830528)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ski (0.29347)
               

               
               pla (0.267344)
               

               
               tes (0.207814)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               pla (0.267344)
               

               
               tes (0.207814)

	9-154, gnl\|bosTau2\|chr11 (25667614-25667469)
	9-154, gnl\|Hg17\|chr2 (54005013-54004868)
	9-154, gnl\|Mm7\|chr11 (30830383-30830528)