Non-Coding RNA Search

Ss1.1-Pig4-TMW8059P03.5

Sequence:


               
               GCCTTTGTGAGGGAGATCCTGGGAGAGGACTCGTAGGGGCAGGGCCTTGGGCACCCCCGC
CCCCGGCCCCGCAGCGCCCCCCAGCCTTCTGCTGGGGCAGTGCTTGCCCACACCCGTAAG
CTACTGCCACCCTGGCCTTGGGCGCCCGAGAGGAGTCGAGGGGGCTGCTCCTGCCCGACA
TGCAGCAGGCCGCCGTCGGTCCCAAGTGCCAAAGAACCAGACCTCGGGGCCCCCCAGTGC
CTCTGCCCCTGCTGCTCCCAGGACCCCGAGACCCTGGACTTGGAGGGGCTGACGCCCTCA
CGGAGAAGGCAGCGGGGCCTTGTGCAGGCTGCTGCCTGGGCCCAGCCCTGGACTCCATCC
AAGTTGTATATTTTTTTAACTCTCGACTGAATGGACTTTGCACACCTGGCCCAGGTGGGC
CACACCTCTGTTCCAGCATCGGTGGGGGGACGTCGTAGGGGGATGAGCCACGTGAATCCC
CTGGAGTCCCCCGACAAGGCAGACGCCAAGCCGCCGAGGCCTTCACCCCAGCCCTGGCAG
ACAGGCCCTCGAAGGCCACCGGGGCCTCCTAGCCCCGCCTGCTGCCTCTAGGGTGTTGTT
TCACTTTTATTTTTTTAATTTATCCTGTTGATTTTTTTTTTTTTTTTCTTTTGCTTTGTG
GGTTTGGCTGGTTTTTCTTGCATGGTTTGGAGCCGATCACTTTTCTGTCACCTGCTAGGG
GACCAGCAGGCTAAGACCCGCCCTCTCGCTCAGGCTGGGGTCTAAGGTGATGGGCCCAAG
GTCTCTGCTCAGAGAGGTGCTAGGGGAGCCACCCAGCTCACTCTCCTTGGGGACCGGCTC
GGTAGGGGCTGTGGACTTGCTTTTGGTATTGTTTAAAAAAAAAGAAAATATATTTTTTTG
AAGAAAGGACTGCTGGTCCTGGGTCCTGTCCCTGATGGGTTAGGGCAGTTACCTGATTGC
TGTTTTAATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTGTGAGGGAGATCCTGGGAGAGGACTCGTAGGGGCAGGGCCTTGGGCACCCCCGC
CCCCGGCCCCGCAGCGCCCCCCAGCCTTCTGCTGGGGCAGTGCTTGCCCACACCCGTAAG
CTACTGCCACCCTGGCCTTGGGCGCCCGAGAGGAGTCGAGGGGGCTGCTCCTGCCCGACA
TGCAGCAGGCCGCCGTCGGTCCCAAGTGCCAAAGAACCAGACCTCGGGGCCCCCCAGTGC
CTCTGCCCCTGCTGCTCCCAGGACCCCGAGACCCTGGACTTGGAGGGGCTGACGCCCTCA
CGGAGAAGGCAGCGGGGCCTTGTGCAGGCTGCTGCCTGGGCCCAGCCCTGGACTCCATCC
AAGTTGTATATTTTTTTAACTCTCGACTGAATGGACTTTGCACACCTGGCCCAGGTGGGC
CACACCTCTGTTCCAGCATCGGTGGGGGGACGTCGTAGGGGGATGAGCCACGTGAATCCC
CTGGAGTCCCCCGACAAGGCAGACGCCAAGCCGCCGAGGCCTTCACCCCAGCCCTGGCAG
ACAGGCCCTCGAAGGCCACCGGGGCCTCCTAGCCCCGCCTGCTGCCTCTAGGGTGTTGTT
TCACTTTTATTTTTTTAATTTATCCTGTTGATTTTTTTTTTTTTTTTCTTTTGCTTTGTG
GGTTTGGCTGGTTTTTCTTGCATGGTTTGGAGCCGATCACTTTTCTGTCACCTGCTAGGG
GACCAGCAGGCTAAGACCCGCCCTCTCGCTCAGGCTGGGGTCTAAGGTGATGGGCCCAAG
GTCTCTGCTCAGAGAGGTGCTAGGGGAGCCACCCAGCTCACTCTCCTTGGGGACCGGCTC
GGTAGGGGCTGTGGACTTGCTTTTGGTATTGTTTAAAAAAAAAGAAAATATATTTTTTTG
AAGAAAGGACTGCTGGTCCTGGGTCCTGTCCCTGATGGGTTAGGGCAGTTACCTGATTGC
TGTTTTAATTTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               81-182, + strand, RNAz p=0.583525
               

               
               267-362, - strand, RNAz p=0.725421
               

               
               857-970, - strand, RNAz p=0.826033

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-182, + strand, RNAz p=0.583525
               

               
               267-362, - strand, RNAz p=0.725421
               

               
               857-970, - strand, RNAz p=0.826033

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC032478, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC032478, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               81-970, gnl|bosTau2|chr19 (27694503-27695379)
               

               
               81-970, gnl|Hg17|chr17 (21158166-21159118)
               

               
               81-970, gnl|Mm7|chr11 (61033426-61034337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-970, gnl|bosTau2|chr19 (27694503-27695379)
               

               
               81-970, gnl|Hg17|chr17 (21158166-21159118)
               

               
               81-970, gnl|Mm7|chr11 (61033426-61034337)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ssp (0.542079)
               

               
               cag (0.302389)
               

               
               ldo (0.291008)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.542079)
               

               
               cag (0.302389)
               

               
               ldo (0.291008)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	81-182, + strand, RNAz p=0.583525
	267-362, - strand, RNAz p=0.725421
	857-970, - strand, RNAz p=0.826033

	81-970, gnl\|bosTau2\|chr19 (27694503-27695379)
	81-970, gnl\|Hg17\|chr17 (21158166-21159118)
	81-970, gnl\|Mm7\|chr11 (61033426-61034337)

	ssp (0.542079)
	cag (0.302389)
	ldo (0.291008)
	ece (0.229305)
	mcp (0.170648)
	fhi (0.169578)
	cje (0.165235)
	nco (0.161734)
	eli (0.151814)
	hlv (0.139256)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)