Ss1.1-Pig4-TMW8059P04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGTCCCTCTGTGAGTGCTGTTTCGCGCTCCCGCCGGCACCACCATGCTGAAGAAATTC GACAAGAAGGACGAGGAATCGGGTGGAGGTTCCAACCCATTCCAGCACCTCGAGAAGAGT GCAGTGCTCCAGGAGGCCCGTGTGTTTAATGAAACCCCCGTCAACCCTCGGAAATGTGCC CACATCCTCACCAAGATCCTTTACCTCATAAACCAGGGGGAGCACCTGGGGACCACTGAA GCAACTGAAGCCTTCTTTGCCATGACCAAACTTTTTCAGTCCAATGATCCCACTCTCCGT CGGATGTGCTACTTAACCATCAAGGAGATGTCCTGCATCGCAGAGGATGTCATCATCGTC ACCAGCAGTCTGACCAAGGACATGACTGGGAAGGAAGATAACTACCGTGGTCCAGCCGTG CGTGCCCTCTGCCAGATCACAGACAGCACCATGCTGCAGGCCATCGAGCGCTACATGAAG CAGGCTATTGTGGACAAGGTGCCCAGCGTCTCCAGCTCTGCCCTGGTGTCTTCCCTGCAC CTGCTCAAGTGCAGCTTTGACGTGGTCAAGCGCTGGGTAAATGAGGCCCAGGAGGCGGCT TCCAGTGACAACATCATGGTCCAGTACCATGCACTGGGGCTCCTGTACCACGTGCGGAAG AACGACCGCCTGGCCGTCAGCAAGATGATCAGCAAGTTCACACGGCACGGCCTCAAATCC CCCTTCGCCTACTGCATGATGATCCGAGTGGCTAGCCGGCAGCTGGAGGAGGAGGACGGC AGCCGAGACAGCCCACTGTTCGACTTCATCGAGAGCTGCCTGCGCAACAAGCATGAGATG GTGGTGTATGAAGCTGCCTCAGCCATTGTCAACCTGCCAGGCTGTAGTGCCAAGGAGCTG GCCCCAGCTGTGTCAGTGCTCCAGCTTTTCTGCAGCTCCCCCAAGGCCGCACTCCGTTAC GCTGCTGTCCGCACCCTCAATAAGGTCGCCATGAAGCATCCATCAGCAGTAACAGCCTGC AACCTGGACCTGGAGAATCTGGTTACAGACTCAAACCGCAGCATTGCCACGCTGGCCATC ACCACCCTCCTCAAGACGGGCAGCGAGGGCAGTATCGACCGCCTCATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGTCCCTCTGTGAGTGCTGTTTCGCGCTCCCGCCGGCACCACCATGCTGAAGAAATTC GACAAGAAGGACGAGGAATCGGGTGGAGGTTCCAACCCATTCCAGCACCTCGAGAAGAGT GCAGTGCTCCAGGAGGCCCGTGTGTTTAATGAAACCCCCGTCAACCCTCGGAAATGTGCC CACATCCTCACCAAGATCCTTTACCTCATAAACCAGGGGGAGCACCTGGGGACCACTGAA GCAACTGAAGCCTTCTTTGCCATGACCAAACTTTTTCAGTCCAATGATCCCACTCTCCGT CGGATGTGCTACTTAACCATCAAGGAGATGTCCTGCATCGCAGAGGATGTCATCATCGTC ACCAGCAGTCTGACCAAGGACATGACTGGGAAGGAAGATAACTACCGTGGTCCAGCCGTG CGTGCCCTCTGCCAGATCACAGACAGCACCATGCTGCAGGCCATCGAGCGCTACATGAAG CAGGCTATTGTGGACAAGGTGCCCAGCGTCTCCAGCTCTGCCCTGGTGTCTTCCCTGCAC CTGCTCAAGTGCAGCTTTGACGTGGTCAAGCGCTGGGTAAATGAGGCCCAGGAGGCGGCT TCCAGTGACAACATCATGGTCCAGTACCATGCACTGGGGCTCCTGTACCACGTGCGGAAG AACGACCGCCTGGCCGTCAGCAAGATGATCAGCAAGTTCACACGGCACGGCCTCAAATCC CCCTTCGCCTACTGCATGATGATCCGAGTGGCTAGCCGGCAGCTGGAGGAGGAGGACGGC AGCCGAGACAGCCCACTGTTCGACTTCATCGAGAGCTGCCTGCGCAACAAGCATGAGATG GTGGTGTATGAAGCTGCCTCAGCCATTGTCAACCTGCCAGGCTGTAGTGCCAAGGAGCTG GCCCCAGCTGTGTCAGTGCTCCAGCTTTTCTGCAGCTCCCCCAAGGCCGCACTCCGTTAC GCTGCTGTCCGCACCCTCAATAAGGTCGCCATGAAGCATCCATCAGCAGTAACAGCCTGC AACCTGGACCTGGAGAATCTGGTTACAGACTCAAACCGCAGCATTGCCACGCTGGCCATC ACCACCCTCCTCAAGACGGGCAGCGAGGGCAGTATCGACCGCCTCATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 621-782, gnl|bosTau2|chr22 (47536056-47536217) | |
| 621-782, gnl|canFam2|chr20 (5857546-5857429) | |
| 621-782, gnl|danRer3|chr4 (16066442-16066328) | |
| 621-782, gnl|dasNov1|scaffold_20130 (120-4) | |
| 621-782, gnl|echTel1|scaffold_289484 (534-649) | |
| 621-782, gnl|fr1|chrUn (75912270-75912384) | |
| 621-782, gnl|galGal2|chr12 (9154793-9154896) | |
| 621-782, gnl|hg17|chr3 (130458994-130459111) | |
| 621-782, gnl|Hg17|chr3 (130459007-130459168) | |
| 621-782, gnl|loxAfr1|scaffold_16553 (44323-44438) | |
| 621-782, gnl|mm7|chr6 (87968873-87968989) | |
| 621-782, gnl|Mm7|chr6 (87968885-87969046) | |
| 621-782, gnl|monDom2|scaffold_5 (47703005-47702891) | |
| 621-782, gnl|oryCun1|scaffold_201004 (87020-87137) | |
| 621-782, gnl|panTro1|chr2 (132511868-132511985) | |
| 621-782, gnl|rheMac2|chr3 (167967119-167967002) | |
| 621-782, gnl|rn3|chr4 (122360294-122360410) | |
| 621-782, gnl|tetNig1|chr19 (2573873-2573756) | |
| 621-782, gnl|xenTro1|scaffold_72 (1459302-1459185) | |
| 983-1128, gnl|bosTau2|chr22 (47537013-47537158) | |
| 983-1128, gnl|canFam2|chr20 (5855601-5855501) | |
| 983-1128, gnl|danRer3|chr4 (16064155-16064054) | |
| 983-1128, gnl|dasNov1|scaffold_54445 (1248-1347) | |
| 983-1128, gnl|echTel1|scaffold_289484 (2003-2104) | |
| 983-1128, gnl|fr1|chrUn (75912922-75913022) | |
| 983-1128, gnl|galGal2|chr12 (9156845-9156945) | |
| 983-1128, gnl|hg17|chr3 (130462155-130462256) | |
| 983-1128, gnl|Hg17|chr3 (130462158-130462303) | |
| 983-1128, gnl|mm7|chr6 (87971015-87971116) | |
| 983-1128, gnl|Mm7|chr6 (87971018-87971163) | |
| 983-1128, gnl|monDom2|scaffold_5 (47701145-47701045) | |
| 983-1128, gnl|oryCun1|scaffold_201004 (89406-89507) | |
| 983-1128, gnl|panTro1|chr2 (132515029-132515130) | |
| 983-1128, gnl|rheMac2|chr3 (167922151-167922052) | |
| 983-1128, gnl|rn3|chr4 (122362679-122362780) | |
| 983-1128, gnl|tetNig1|chr19 (2573198-2573100) | |
| 983-1128, gnl|xenTro1|scaffold_72 (1457223-1457124) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 621-782, gnl|bosTau2|chr22 (47536056-47536217) | |
| 621-782, gnl|canFam2|chr20 (5857546-5857429) | |
| 621-782, gnl|danRer3|chr4 (16066442-16066328) | |
| 621-782, gnl|dasNov1|scaffold_20130 (120-4) | |
| 621-782, gnl|echTel1|scaffold_289484 (534-649) | |
| 621-782, gnl|fr1|chrUn (75912270-75912384) | |
| 621-782, gnl|galGal2|chr12 (9154793-9154896) | |
| 621-782, gnl|hg17|chr3 (130458994-130459111) | |
| 621-782, gnl|Hg17|chr3 (130459007-130459168) | |
| 621-782, gnl|loxAfr1|scaffold_16553 (44323-44438) | |
| 621-782, gnl|mm7|chr6 (87968873-87968989) | |
| 621-782, gnl|Mm7|chr6 (87968885-87969046) | |
| 621-782, gnl|monDom2|scaffold_5 (47703005-47702891) | |
| 621-782, gnl|oryCun1|scaffold_201004 (87020-87137) | |
| 621-782, gnl|panTro1|chr2 (132511868-132511985) | |
| 621-782, gnl|rheMac2|chr3 (167967119-167967002) | |
| 621-782, gnl|rn3|chr4 (122360294-122360410) | |
| 621-782, gnl|tetNig1|chr19 (2573873-2573756) | |
| 621-782, gnl|xenTro1|scaffold_72 (1459302-1459185) | |
| 983-1128, gnl|bosTau2|chr22 (47537013-47537158) | |
| 983-1128, gnl|canFam2|chr20 (5855601-5855501) | |
| 983-1128, gnl|danRer3|chr4 (16064155-16064054) | |
| 983-1128, gnl|dasNov1|scaffold_54445 (1248-1347) | |
| 983-1128, gnl|echTel1|scaffold_289484 (2003-2104) | |
| 983-1128, gnl|fr1|chrUn (75912922-75913022) | |
| 983-1128, gnl|galGal2|chr12 (9156845-9156945) | |
| 983-1128, gnl|hg17|chr3 (130462155-130462256) | |
| 983-1128, gnl|Hg17|chr3 (130462158-130462303) | |
| 983-1128, gnl|mm7|chr6 (87971015-87971116) | |
| 983-1128, gnl|Mm7|chr6 (87971018-87971163) | |
| 983-1128, gnl|monDom2|scaffold_5 (47701145-47701045) | |
| 983-1128, gnl|oryCun1|scaffold_201004 (89406-89507) | |
| 983-1128, gnl|panTro1|chr2 (132515029-132515130) | |
| 983-1128, gnl|rheMac2|chr3 (167922151-167922052) | |
| 983-1128, gnl|rn3|chr4 (122362679-122362780) | |
| 983-1128, gnl|tetNig1|chr19 (2573198-2573100) | |
| 983-1128, gnl|xenTro1|scaffold_72 (1457223-1457124) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| eep (0.122564) |