Non-Coding RNA Search

Ss1.1-Pig4-TMW8059P06.5

Sequence:


               
               TCCGCTTCAGGCATCGCCCGTGGGATCCGAGGGCCAGAGAAATAGTCCTTCTGAGACTGC
CATCCAAGAAACTCAGGGAGAGGAGCTGACAGTCTCTGCATCCCTCACCCCCACCCTGGG
ACAGGACCCAACAACATGTCTCAGGCCACCAAGAGGAAGCACGTGGTGAAGGAGGTGCTG
GGGGAGCACATGGTGCCCTCCGACCGGCAGCAGATCGTCAGGGTGCTCAGGACCCCAGGG
AACAATCTGCATGAGGTGGAGACAGCCCAGGGGCAGCACTTCCTGGTGAGCATGCCCTCC
AAATACCGCAAGAACATCTGGATCAAGAGAGGGGACTTTCTCATTGTTGACCCTATTGAA
GAGGGAGAGAAAGTGAAGGCCGAGATCTCCTTTGTGCTCTGCAGAAATCATGTGCGCGCT
CTACAGAAGGAAGGGCTCTGGCCACAGGCCTTCTCCGAAGTGGCTGAGAAACACGATGAT
AACAGTAACAGACAGACTCAGCCAGAACTCCCAGCTGAGCCACGGTTGTCAGAAGACAAG
TCCAGCTCTGAAGATGATTCTGACCTTTTTGTTAACACCAACCGCAGACAGTATCATGAG
AGTGAGGAGGAGAGCGAAGAGGAGGAGGCAGCCTGAGACCCCGGACCCACTTCTCCTCTG
GCTGAGACTCGCCCTTGGATCCTCTGAGCTTGGACATTCCCAGGGTGCTTTGCAGATCTT
TCCCCCTGGATGGGGACAAGGCAGGGCCCCTCTCTGAACTGACCTTCTGACATGGGAGAA
TTAAACCCCTGGTGGGTGGTGACTTCGCTGGCATTGACCTTTTAGTCACTGCTCAGACAT
AGAGGTTTACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGCTTCAGGCATCGCCCGTGGGATCCGAGGGCCAGAGAAATAGTCCTTCTGAGACTGC
CATCCAAGAAACTCAGGGAGAGGAGCTGACAGTCTCTGCATCCCTCACCCCCACCCTGGG
ACAGGACCCAACAACATGTCTCAGGCCACCAAGAGGAAGCACGTGGTGAAGGAGGTGCTG
GGGGAGCACATGGTGCCCTCCGACCGGCAGCAGATCGTCAGGGTGCTCAGGACCCCAGGG
AACAATCTGCATGAGGTGGAGACAGCCCAGGGGCAGCACTTCCTGGTGAGCATGCCCTCC
AAATACCGCAAGAACATCTGGATCAAGAGAGGGGACTTTCTCATTGTTGACCCTATTGAA
GAGGGAGAGAAAGTGAAGGCCGAGATCTCCTTTGTGCTCTGCAGAAATCATGTGCGCGCT
CTACAGAAGGAAGGGCTCTGGCCACAGGCCTTCTCCGAAGTGGCTGAGAAACACGATGAT
AACAGTAACAGACAGACTCAGCCAGAACTCCCAGCTGAGCCACGGTTGTCAGAAGACAAG
TCCAGCTCTGAAGATGATTCTGACCTTTTTGTTAACACCAACCGCAGACAGTATCATGAG
AGTGAGGAGGAGAGCGAAGAGGAGGAGGCAGCCTGAGACCCCGGACCCACTTCTCCTCTG
GCTGAGACTCGCCCTTGGATCCTCTGAGCTTGGACATTCCCAGGGTGCTTTGCAGATCTT
TCCCCCTGGATGGGGACAAGGCAGGGCCCCTCTCTGAACTGACCTTCTGACATGGGAGAA
TTAAACCCCTGGTGGGTGGTGACTTCGCTGGCATTGACCTTTTAGTCACTGCTCAGACAT
AGAGGTTTACCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5RD29_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RD29_PONPY

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               222-335, gnl|bosTau2|chr29 (30590600-30590487)
               

               
               222-335, gnl|Hg17|chr11 (65524209-65523822)
               

               
               222-335, gnl|Mm7|chr19 (5263227-5263338)
               


               
               489-804, gnl|bosTau2|chr29 (30589532-30589214)
               

               
               489-804, gnl|Hg17|chr11 (65522793-65522475)
               

               
               489-804, gnl|Mm7|chr19 (5264729-5265052)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-335, gnl|bosTau2|chr29 (30590600-30590487)
               

               
               222-335, gnl|Hg17|chr11 (65524209-65523822)
               

               
               222-335, gnl|Mm7|chr19 (5263227-5263338)
               


               
               489-804, gnl|bosTau2|chr29 (30589532-30589214)
               

               
               489-804, gnl|Hg17|chr11 (65522793-65522475)
               

               
               489-804, gnl|Mm7|chr19 (5264729-5265052)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	222-335, gnl\|bosTau2\|chr29 (30590600-30590487)
	222-335, gnl\|Hg17\|chr11 (65524209-65523822)
	222-335, gnl\|Mm7\|chr19 (5263227-5263338)

	489-804, gnl\|bosTau2\|chr29 (30589532-30589214)
	489-804, gnl\|Hg17\|chr11 (65522793-65522475)
	489-804, gnl\|Mm7\|chr19 (5264729-5265052)

	fce (0.271592)
	ece (0.229305)
	nmm (0.132802)
	ecc (0.115035)
	jca (0.11396)