Ss1.1-Pig4-TMW8059P08.5
|
CAGGTGTTTGTTTAAAAAAAAAAAAAAATTACCAAGAGTTAATTGTTTGACTGTCACATC
TTTCTTGAACATCCAGCCTCTTAAAGAGACCACCTCTTAAGGAGTGTGTAAACTATGCAT
GATGAAAATTCTTGTATTTTATTAAGGAGTGGGTCGGTTTACTCACCACATCTGTGGAAT
CATTGTTACAAATATAGTTGCTTAGAAAACTCCTTGTGACTTGTAGTTTAACTTCATCTC
ATCTAGTGTAAATATTATAAGATGTATAACATCTTCAGTAGATACAAACTGCTGTCAGTA
TTGACTTCAGAGCAAGTGAGTAATCAAGTAGGTAAGAGCCTGTTCCAAATAAAATACCTA
GTTGGATTTATACTTTATTGTGTACAGATTTAACAACATCCAATATTATTAACTGTGGCT
TGACAGTGCAACTCAGAATGAAAGTAAGTTCTTTGTGTTACCTGACTGTCCAAGATTTAA
AAGATGTGTATTGGTATGAGGTGTTTCAATCTCTGTCCTGCTTATAGTAAGGGGAAGTTT
CATTGATACCGCTTGGACTCCCATGAGCTTTTACATACCATTTGTGTTGTGTTTTTTATT
TACTGTAAACTACCATCCTTTTTATCTTTATTTTATCCTTCCTCTTCAGAAAAGAACAAA
ATCTGAATTAAGTCTCAATATAAGTGTGATAAGACACTACCCTTTGCGGTATGGAGTGAA
CCAGGGAATTTGGAGAGTGTATCGGACCGTCCTCTCTTACCCCCAGCTCCCTAATATGTG
TGAGGCAGTGTGGTGGAGAGTGAAGAGCATGGGCCCTGGGGTCAGCCAGCCAGTGCCCCA
ACCCCTACTCTGCCCTTTACGTGCAAATGACCATGGGCACCTTCTCCAGCTTGTCTGAGC
TTCAGGCTCCTCACTTGTGAGGTGGAAATAATGAAAACAGTACCTGCAGAATCAGAATTA
TTTGGAGGATTGATAATGTGTGTTCATATGTGTAATGCACTTAGAGCGGTGTCCACTGCC
GTTCACTTAATATCTAGGACTTGTGTAAGATAGAATATGCACGTCTTTGATACTCTCTCT
CTTTTCTTTGCAGTCGTTGGTTCCTATAATAAAAGAAATGCGTAGGATATATATTTGTAT
ATTCATGTTGACACGATATTTAAAATAATTGCTACCACTCATTTAATTCAGTATAAGACT
AACAGATGGAAGTCTCTAAATTGCTTAAAGGTATTTTGCAAAATACTAACTTGCTCTGTA
TTTCTTTAGAGAAAGTTTATAATTAGTAATATTGATAGTTCTGATCATATTTCATTCTCA
AGTTGTTAATGAGTCTTTTTTACTATAGATTCATGCCAGCTAACTATTGGAGGTTTCCTT
TCACATCATTTGAAATTATGTAAAGGAATCAGATACAAACTATTGCGGTTAGAAATAAAA
TATGAAATAACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGGTGTTTGTTTAAAAAAAAAAAAAAATTACCAAGAGTTAATTGTTTGACTGTCACATC
TTTCTTGAACATCCAGCCTCTTAAAGAGACCACCTCTTAAGGAGTGTGTAAACTATGCAT
GATGAAAATTCTTGTATTTTATTAAGGAGTGGGTCGGTTTACTCACCACATCTGTGGAAT
CATTGTTACAAATATAGTTGCTTAGAAAACTCCTTGTGACTTGTAGTTTAACTTCATCTC
ATCTAGTGTAAATATTATAAGATGTATAACATCTTCAGTAGATACAAACTGCTGTCAGTA
TTGACTTCAGAGCAAGTGAGTAATCAAGTAGGTAAGAGCCTGTTCCAAATAAAATACCTA
GTTGGATTTATACTTTATTGTGTACAGATTTAACAACATCCAATATTATTAACTGTGGCT
TGACAGTGCAACTCAGAATGAAAGTAAGTTCTTTGTGTTACCTGACTGTCCAAGATTTAA
AAGATGTGTATTGGTATGAGGTGTTTCAATCTCTGTCCTGCTTATAGTAAGGGGAAGTTT
CATTGATACCGCTTGGACTCCCATGAGCTTTTACATACCATTTGTGTTGTGTTTTTTATT
TACTGTAAACTACCATCCTTTTTATCTTTATTTTATCCTTCCTCTTCAGAAAAGAACAAA
ATCTGAATTAAGTCTCAATATAAGTGTGATAAGACACTACCCTTTGCGGTATGGAGTGAA
CCAGGGAATTTGGAGAGTGTATCGGACCGTCCTCTCTTACCCCCAGCTCCCTAATATGTG
TGAGGCAGTGTGGTGGAGAGTGAAGAGCATGGGCCCTGGGGTCAGCCAGCCAGTGCCCCA
ACCCCTACTCTGCCCTTTACGTGCAAATGACCATGGGCACCTTCTCCAGCTTGTCTGAGC
TTCAGGCTCCTCACTTGTGAGGTGGAAATAATGAAAACAGTACCTGCAGAATCAGAATTA
TTTGGAGGATTGATAATGTGTGTTCATATGTGTAATGCACTTAGAGCGGTGTCCACTGCC
GTTCACTTAATATCTAGGACTTGTGTAAGATAGAATATGCACGTCTTTGATACTCTCTCT
CTTTTCTTTGCAGTCGTTGGTTCCTATAATAAAAGAAATGCGTAGGATATATATTTGTAT
ATTCATGTTGACACGATATTTAAAATAATTGCTACCACTCATTTAATTCAGTATAAGACT
AACAGATGGAAGTCTCTAAATTGCTTAAAGGTATTTTGCAAAATACTAACTTGCTCTGTA
TTTCTTTAGAGAAAGTTTATAATTAGTAATATTGATAGTTCTGATCATATTTCATTCTCA
AGTTGTTAATGAGTCTTTTTTACTATAGATTCATGCCAGCTAACTATTGGAGGTTTCCTT
TCACATCATTTGAAATTATGTAAAGGAATCAGATACAAACTATTGCGGTTAGAAATAAAA
TATGAAATAACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
17-195, gnl|bosTau2|chrX (39163650-39163831) |
|
17-195, gnl|canFam2|chrX (15986891-15987068) |
|
17-195, gnl|canFam2|chrX (15986904-15987069) |
|
17-195, gnl|echTel1|scaffold_34805 (3326-3474) |
|
17-195, gnl|echTel1|scaffold_6068 (29-191) |
|
17-195, gnl|hg17|chr1 (16754891-16755066) |
|
17-195, gnl|hg17|chrX (19903571-19903732) |
|
17-195, gnl|Hg17|chrX (19903745-19903570) |
|
17-195, gnl|loxAfr1|scaffold_30166 (15503-15678) |
|
17-195, gnl|loxAfr1|scaffold_30166 (15520-15679) |
|
17-195, gnl|mm7|chrX (154162989-154162819) |
|
17-195, gnl|mm7|chrX (154162978-154162818) |
|
17-195, gnl|Mm7|chrX (154162807-154162975) |
|
17-195, gnl|monDom2|scaffold_48 (13521712-13521526) |
|
17-195, gnl|monDom2|scaffold_48 (13521695-13521525) |
|
17-195, gnl|rheMac2|chrX (17874806-17874979) |
|
17-195, gnl|rheMac2|chrX (17874819-17874980) |
|
17-195, gnl|rn3|chrX (56752657-56752820) |
|
17-195, gnl|rn3|chrX (56752664-56752821) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
17-195, gnl|bosTau2|chrX (39163650-39163831) |
|
17-195, gnl|canFam2|chrX (15986891-15987068) |
|
17-195, gnl|canFam2|chrX (15986904-15987069) |
|
17-195, gnl|echTel1|scaffold_34805 (3326-3474) |
|
17-195, gnl|echTel1|scaffold_6068 (29-191) |
|
17-195, gnl|hg17|chr1 (16754891-16755066) |
|
17-195, gnl|hg17|chrX (19903571-19903732) |
|
17-195, gnl|Hg17|chrX (19903745-19903570) |
|
17-195, gnl|loxAfr1|scaffold_30166 (15503-15678) |
|
17-195, gnl|loxAfr1|scaffold_30166 (15520-15679) |
|
17-195, gnl|mm7|chrX (154162989-154162819) |
|
17-195, gnl|mm7|chrX (154162978-154162818) |
|
17-195, gnl|Mm7|chrX (154162807-154162975) |
|
17-195, gnl|monDom2|scaffold_48 (13521712-13521526) |
|
17-195, gnl|monDom2|scaffold_48 (13521695-13521525) |
|
17-195, gnl|rheMac2|chrX (17874806-17874979) |
|
17-195, gnl|rheMac2|chrX (17874819-17874980) |
|
17-195, gnl|rn3|chrX (56752657-56752820) |
|
17-195, gnl|rn3|chrX (56752664-56752821) |
|
pro (1.02407) |
|
fco (0.943248) |
|
ski (0.586941) |
|
lyg (0.532411) |
|
isp (0.451128) |
|
aor (0.390549) |
|
ldo (0.38801) |
|
tra (0.369276) |
|
gul (0.355177) |
|
vin (0.332557) |
|
cki (0.330469) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
liv (0.292569) |
|
che (0.272628) |
|
fce (0.271592) |
|
ste (0.270416) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ova (0.258264) |
|
sug (0.254582) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
spc (0.226732) |
|
cty (0.20816) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
ret (0.128733) |
|
thg (0.126791) |
|
ese (0.126502) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
pro (1.02407) |
|
fco (0.943248) |
|
ski (0.586941) |
|
lyg (0.532411) |
|
isp (0.451128) |
|
aor (0.390549) |
|
ldo (0.38801) |
|
tra (0.369276) |
|
gul (0.355177) |
|
vin (0.332557) |
|
cki (0.330469) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
liv (0.292569) |
|
che (0.272628) |
|
fce (0.271592) |
|
ste (0.270416) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ova (0.258264) |
|
sug (0.254582) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
spc (0.226732) |
|
cty (0.20816) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
ret (0.128733) |
|
thg (0.126791) |
|
ese (0.126502) |
|
clu (0.119646) |
|
ecc (0.115035) |
