Non-Coding RNA Search

Ss1.1-Pig4-TMW8059P14.5

Sequence:


               
               CCTGTGGTCTCGCCCGTCTCCGCTGCCATGTTGGATTGTGCGGCCGCCGCCGCCGCCGAA
GGAGGGTTGGAGGAGGAGTTGGGAGTTTAACGCAGTCGCCGGAGTGCAAGGACAACGACC
ATCCGGCCAGACCCTGGCCGGGCGGGAGCAGAGAGCTTCCCTTTCTCAGCGCGGTCCGCC
GACGGCTCCTCCTTCCCTTGGCCTCCTCCCCGTGCCAGAGGAGCTGCGAGATGCTGCGCC
TCTGACTCCCCTCCTCCCGCCCCTGTCACCGAGAAGGGGATCTAGCATTCGCCCACTCGC
CGGAGGAGACGGCCCTGGCCTCCCAACCCTGCCGGCGAAACCATGAGCTCCGGCCCGCAG
CAGCCGCCGCCGCCGCGGAGGGTCACCAACGTGGGGTCCCTGCTGCTCACCCCGCAGGAG
AACGAGTCCCTCTTCACCTTCCTCGGCAAGAAATGTGTGACTATGTCTTCAGCAGTGGTA
CAGTTATATGCAGCAGATCGGAACTGTATGTGGTCAAAGAAGTGTAGTGGTGTTGCTTGT
CTTGTTAAGGACAATCCACAGAGATCTTATTTTTTAAGAATATTTGATATCAAGGATGGG
AAACTATTGTGGGAACAAGAGCTATACAATAACTTTGTATATAATAGTCCTAGAGGATAT
TTTCATACCTTTGCTGGAGATACCTGTCAAGTTGCTCTTAATTTTGCCAATGAAGAAGAA
GCAAAAAAATTCCGAAAAGCAGTTACAGACTTGTTGGGCCGGCGACAGAGGAAATCTGAG
AAAAGACGAGACCCTCCAAATGGTCCTAATCTACCCATGGCAACAGTTGACATAAAAAAC
CCAGAAATCACAACAAATAGGTTTTATGGTCCACAAGTCAACAACATTTCCCATACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTGGTCTCGCCCGTCTCCGCTGCCATGTTGGATTGTGCGGCCGCCGCCGCCGCCGAA
GGAGGGTTGGAGGAGGAGTTGGGAGTTTAACGCAGTCGCCGGAGTGCAAGGACAACGACC
ATCCGGCCAGACCCTGGCCGGGCGGGAGCAGAGAGCTTCCCTTTCTCAGCGCGGTCCGCC
GACGGCTCCTCCTTCCCTTGGCCTCCTCCCCGTGCCAGAGGAGCTGCGAGATGCTGCGCC
TCTGACTCCCCTCCTCCCGCCCCTGTCACCGAGAAGGGGATCTAGCATTCGCCCACTCGC
CGGAGGAGACGGCCCTGGCCTCCCAACCCTGCCGGCGAAACCATGAGCTCCGGCCCGCAG
CAGCCGCCGCCGCCGCGGAGGGTCACCAACGTGGGGTCCCTGCTGCTCACCCCGCAGGAG
AACGAGTCCCTCTTCACCTTCCTCGGCAAGAAATGTGTGACTATGTCTTCAGCAGTGGTA
CAGTTATATGCAGCAGATCGGAACTGTATGTGGTCAAAGAAGTGTAGTGGTGTTGCTTGT
CTTGTTAAGGACAATCCACAGAGATCTTATTTTTTAAGAATATTTGATATCAAGGATGGG
AAACTATTGTGGGAACAAGAGCTATACAATAACTTTGTATATAATAGTCCTAGAGGATAT
TTTCATACCTTTGCTGGAGATACCTGTCAAGTTGCTCTTAATTTTGCCAATGAAGAAGAA
GCAAAAAAATTCCGAAAAGCAGTTACAGACTTGTTGGGCCGGCGACAGAGGAAATCTGAG
AAAAGACGAGACCCTCCAAATGGTCCTAATCTACCCATGGCAACAGTTGACATAAAAAAC
CCAGAAATCACAACAAATAGGTTTTATGGTCCACAAGTCAACAACATTTCCCATACCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PDL3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PDL3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               581-704, + strand, RNAz p=0.77991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               581-704, + strand, RNAz p=0.77991

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR749438, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR749438, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-459, gnl|bosTau2|chr24 (7369395-7368922)
               

               
               1-459, gnl|Hg17|chr7 (122983099-122982623)
               

               
               1-459, gnl|Mm7|chr6 (24608269-24607802)
               


               
               581-704, gnl|bosTau2|chr24 (7318081-7317960)
               

               
               581-704, gnl|Hg17|chr7 (122940845-122940722)
               

               
               581-704, gnl|Mm7|chr6 (24577937-24577820)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-459, gnl|bosTau2|chr24 (7369395-7368922)
               

               
               1-459, gnl|Hg17|chr7 (122983099-122982623)
               

               
               1-459, gnl|Mm7|chr6 (24608269-24607802)
               


               
               581-704, gnl|bosTau2|chr24 (7318081-7317960)
               

               
               581-704, gnl|Hg17|chr7 (122940845-122940722)
               

               
               581-704, gnl|Mm7|chr6 (24577937-24577820)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               jej (0.197844)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	1-459, gnl\|bosTau2\|chr24 (7369395-7368922)
	1-459, gnl\|Hg17\|chr7 (122983099-122982623)
	1-459, gnl\|Mm7\|chr6 (24608269-24607802)

	581-704, gnl\|bosTau2\|chr24 (7318081-7317960)
	581-704, gnl\|Hg17\|chr7 (122940845-122940722)
	581-704, gnl\|Mm7\|chr6 (24577937-24577820)

	jej (0.197844)
	col (0.195008)
	sag (0.182715)
	mcp (0.170648)
	csk (0.140746)
	pla (0.133672)
	pgl (0.118483)
	ebs (0.118301)
	ldo (0.0970026)