Non-Coding RNA Search

Ss1.1-Pig4-TMW8059P17.5

Sequence:


               
               TTGAGGCAGTTATTGTGAGGTTTAAGACCCTAAAACAAACACGTTTTAGGCGAAAGCTCT
GCAGACGCCATTATCCTCTGTTTCTTCGCTGCACCAACCTCGAAGTCTTGTCTACGTCCC
GCTTATTTGCGGCTGCAGACGCCATGCAGCACCATAGTGTCAGTTGGTCCCGCCCAGAAC
ACTTCAGTTCTGCTCTGCAAGGATATATAACTGATTGGTGTGTCCATTTAATACAAGAAA
ATGGAAACGGAACAACCGGAGGAAACCTTTCCCAACACTGAAACCAATGGCGAATTTGGT
AAACGCCCTGCTGAAGATATGGAAGAAGAACAAGCTTTTAAAAGATCTAGAAACACTGAT
GAGATGGTTGAACTGCGCATCCTGCTTCAGAGCAAGAATGCTGGGGCAGTGATTGGGAAA
GGAGGCAAGAATATTAAGGCTCTCCGTACAGACTACAATGCCAGTGTTTCAGTCCCAGAC
AGCAGTGGCCCCGAGCGCATATTGAGTATCAGTGCCGATATTGAAACAATTGGAGAAATT
CTGAAGAAAATCATCCCTACCTTAGAAGAGGGCCTGCAGTTGCCATCACCCACTGCAACC
AGCCAGCTCCCGCTCGAATCTGATGCTGTGGAATGCTTAAATTACCAGCACTATAAAGGA
AGCGACTTTGACTGCGAGTTGAGATTGTTGATTCATCAGAGTCTGGCAGGAGGAATTATT
GGGGTCAAAGGTGCTAAAATCAAAGAACTTCGGGAGAACACTCAGACAACAATCAAGCTT
TTCCAGGAATGTTGTCCTCAGTCCACTGACAGAGTCGTTCTCATTGGAGGAAAACCTGAT
AGGGTTGTAGAGTGTATAAAGATCATCCTTGATCTCATATCAGAGTCGCCCATTAAAGGA
CGTGCTCAGCCTTATGATCCCAATTTTTATGATGAAACGTATGATTATGGTGGCTTTACA
ATGATGTTTGATGATCGCCGTGGACGTCCTGTGGGATTTCCCATGCGGGGAAGAGGTGGT
TTTGACAGAATGCCTCCTGGTCGAGGAGGGCGTCCCATGCCTCCATCTAGAAGAGATTAT
GACGATATGAGCCCTCGTCGAGGACCTCCTCCCCCTCCTCCTGGACGAGGTGGCCGGGGT
GGTAGCAGAGCTAGGAATCTTCCTCTTCCACCACCACCACCACCTAGAGGAGGAGATCTA
ATGGCTTATGACAGAAGAGGAAGACCTGGAGACCGCTATGATGGCATGGTTGGTTTCAGT
GCTGATGAAACCTGGGACTCTGCAATTGATACATGGAGCCCATCAGAGTGGCAGATGGCT
TATGAACCACAGGGTGGATCTGGATATGATTATTCCTATGCAGGGGGTCGTGGCTCATAC
GGTGATCTTGGTGGACCTATTATTACTACACAAGTAACTATTCCCAAAGATTTGGCTGGA
TCTATTATTGGCAAAGGTGGTCAGCGGATTAAACAAATCCGTCATGAATCAGGAGCTTCG
ATCAAAATTGATGAGCCTTTAGAAGGGTCCGAAGATCGGATCATTACCATTACAGGAACA
CAGGACCAGATACAGAATGCACAGTATTTGCTGCAGAACAGTGTGAAGCAGTATTCTGGA
AAGTTTTTCTAAGACTAGTGAAGAACTGAAGGAGTCCTGCATCTTTTTTTTTTTTATCTG
CTTCTGTTTAAAAAGCCAACATTCCTCTGCTTCATAGGTGTTCTGCATTTGAGGTGTAGT
GAAATCTTTGCTGTTCACCAGATGTAATGTTTTAGTTCTTACAAACAGGGTTGGGGGGTG
GGGGAGGGCGTGCAAAAACTAACATTGAAATTTTGAAACAGCAGCAGAGTGAGTGAATTT
TAATTTTTGTTCATTGTTGGTGGTTTAAAAAAAAATTCCCCCATGTAATTATTGTGAACA
CTTTGCTTTGTGGTCACTATAACATTTGGGGGAGGGGGGGACAGGGAAAAAAAGTAACAA
TAGTCCATATGTCCCTGGCATCTATTCAGAGCAGTGTGCAGAATGTAATGCTCTTTTGTA
AGAAACGTTTTATGATTTTTAAAATAAATTTAGTGAACCTATTTTTGGTGGTCATTTTTT
AATGGTCATTTTTCAGATGGCTGAATTCCCCCCCAGTTTGCCCCCAAACTAAACACTAAG
TTTAATTTTCAGTCCTCTGTTGGATATAAATAAATACATCTCCTCTTGGACATATGCAAA
ATATCTTGACACATTTAGTTCTGGTGATCTCTTAATGGTTTGAAAGTCCATTGCTTGGGA
GAAAATTCCACCATACATTCATGCTTATAGTAAGCGGGGGATTTTTGTTTGTTTTTGCAA
ATGCTTGCCCCTACTTTGCAACAATTTTGTTAGTGATTATGAAGAAGAACCAAAGTGGGG
AGCAATACAGCAGATGGAGTAGTGGTATAAGTATATATACCAGAAGCCTAATGGCAGCAA
GTTTTATTAGTCAGAATATTTGGTTATGGAAGTGACTGATGCTAAATAAATTCTGATTAT
TTTTTATTAGATAATTTCTCACCTATAGACTTAAACTGTCAGCTTGGTAGTGTCTATTAG
TTAAACTTTGTAAAATATATATATATTCTTGTTTTTCCATTGTATGCAAATTGAAAGAAA
AAGATGTACCATTTCTCTGTTGTATGTTGGATTATGTAGGAAATGTTTGTGAACAATTCA
AAAAACATGAAAAAAGTTCCTGTGGATGTTTTGTGTAGTTATCTTGGCATTTGTACTGAT
AGTTAAAAGTTCACTTCCAAATAAGTAAAACTCCCATAATGTTAGATTTGATGTGTGACC
GATTTGAACAAGGGTTGATTGACACCTGTAAAATTTGTTAAAACGTTCCTCTTGTAAGGA
AATACAGTGATCTTAAATTAAAAAAAAAAAAAAAAAAAAAAAGGGGGGAAAAAAAAAAAA
ATTTTCCTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGGCAGTTATTGTGAGGTTTAAGACCCTAAAACAAACACGTTTTAGGCGAAAGCTCT
GCAGACGCCATTATCCTCTGTTTCTTCGCTGCACCAACCTCGAAGTCTTGTCTACGTCCC
GCTTATTTGCGGCTGCAGACGCCATGCAGCACCATAGTGTCAGTTGGTCCCGCCCAGAAC
ACTTCAGTTCTGCTCTGCAAGGATATATAACTGATTGGTGTGTCCATTTAATACAAGAAA
ATGGAAACGGAACAACCGGAGGAAACCTTTCCCAACACTGAAACCAATGGCGAATTTGGT
AAACGCCCTGCTGAAGATATGGAAGAAGAACAAGCTTTTAAAAGATCTAGAAACACTGAT
GAGATGGTTGAACTGCGCATCCTGCTTCAGAGCAAGAATGCTGGGGCAGTGATTGGGAAA
GGAGGCAAGAATATTAAGGCTCTCCGTACAGACTACAATGCCAGTGTTTCAGTCCCAGAC
AGCAGTGGCCCCGAGCGCATATTGAGTATCAGTGCCGATATTGAAACAATTGGAGAAATT
CTGAAGAAAATCATCCCTACCTTAGAAGAGGGCCTGCAGTTGCCATCACCCACTGCAACC
AGCCAGCTCCCGCTCGAATCTGATGCTGTGGAATGCTTAAATTACCAGCACTATAAAGGA
AGCGACTTTGACTGCGAGTTGAGATTGTTGATTCATCAGAGTCTGGCAGGAGGAATTATT
GGGGTCAAAGGTGCTAAAATCAAAGAACTTCGGGAGAACACTCAGACAACAATCAAGCTT
TTCCAGGAATGTTGTCCTCAGTCCACTGACAGAGTCGTTCTCATTGGAGGAAAACCTGAT
AGGGTTGTAGAGTGTATAAAGATCATCCTTGATCTCATATCAGAGTCGCCCATTAAAGGA
CGTGCTCAGCCTTATGATCCCAATTTTTATGATGAAACGTATGATTATGGTGGCTTTACA
ATGATGTTTGATGATCGCCGTGGACGTCCTGTGGGATTTCCCATGCGGGGAAGAGGTGGT
TTTGACAGAATGCCTCCTGGTCGAGGAGGGCGTCCCATGCCTCCATCTAGAAGAGATTAT
GACGATATGAGCCCTCGTCGAGGACCTCCTCCCCCTCCTCCTGGACGAGGTGGCCGGGGT
GGTAGCAGAGCTAGGAATCTTCCTCTTCCACCACCACCACCACCTAGAGGAGGAGATCTA
ATGGCTTATGACAGAAGAGGAAGACCTGGAGACCGCTATGATGGCATGGTTGGTTTCAGT
GCTGATGAAACCTGGGACTCTGCAATTGATACATGGAGCCCATCAGAGTGGCAGATGGCT
TATGAACCACAGGGTGGATCTGGATATGATTATTCCTATGCAGGGGGTCGTGGCTCATAC
GGTGATCTTGGTGGACCTATTATTACTACACAAGTAACTATTCCCAAAGATTTGGCTGGA
TCTATTATTGGCAAAGGTGGTCAGCGGATTAAACAAATCCGTCATGAATCAGGAGCTTCG
ATCAAAATTGATGAGCCTTTAGAAGGGTCCGAAGATCGGATCATTACCATTACAGGAACA
CAGGACCAGATACAGAATGCACAGTATTTGCTGCAGAACAGTGTGAAGCAGTATTCTGGA
AAGTTTTTCTAAGACTAGTGAAGAACTGAAGGAGTCCTGCATCTTTTTTTTTTTTATCTG
CTTCTGTTTAAAAAGCCAACATTCCTCTGCTTCATAGGTGTTCTGCATTTGAGGTGTAGT
GAAATCTTTGCTGTTCACCAGATGTAATGTTTTAGTTCTTACAAACAGGGTTGGGGGGTG
GGGGAGGGCGTGCAAAAACTAACATTGAAATTTTGAAACAGCAGCAGAGTGAGTGAATTT
TAATTTTTGTTCATTGTTGGTGGTTTAAAAAAAAATTCCCCCATGTAATTATTGTGAACA
CTTTGCTTTGTGGTCACTATAACATTTGGGGGAGGGGGGGACAGGGAAAAAAAGTAACAA
TAGTCCATATGTCCCTGGCATCTATTCAGAGCAGTGTGCAGAATGTAATGCTCTTTTGTA
AGAAACGTTTTATGATTTTTAAAATAAATTTAGTGAACCTATTTTTGGTGGTCATTTTTT
AATGGTCATTTTTCAGATGGCTGAATTCCCCCCCAGTTTGCCCCCAAACTAAACACTAAG
TTTAATTTTCAGTCCTCTGTTGGATATAAATAAATACATCTCCTCTTGGACATATGCAAA
ATATCTTGACACATTTAGTTCTGGTGATCTCTTAATGGTTTGAAAGTCCATTGCTTGGGA
GAAAATTCCACCATACATTCATGCTTATAGTAAGCGGGGGATTTTTGTTTGTTTTTGCAA
ATGCTTGCCCCTACTTTGCAACAATTTTGTTAGTGATTATGAAGAAGAACCAAAGTGGGG
AGCAATACAGCAGATGGAGTAGTGGTATAAGTATATATACCAGAAGCCTAATGGCAGCAA
GTTTTATTAGTCAGAATATTTGGTTATGGAAGTGACTGATGCTAAATAAATTCTGATTAT
TTTTTATTAGATAATTTCTCACCTATAGACTTAAACTGTCAGCTTGGTAGTGTCTATTAG
TTAAACTTTGTAAAATATATATATATTCTTGTTTTTCCATTGTATGCAAATTGAAAGAAA
AAGATGTACCATTTCTCTGTTGTATGTTGGATTATGTAGGAAATGTTTGTGAACAATTCA
AAAAACATGAAAAAAGTTCCTGTGGATGTTTTGTGTAGTTATCTTGGCATTTGTACTGAT
AGTTAAAAGTTCACTTCCAAATAAGTAAAACTCCCATAATGTTAGATTTGATGTGTGACC
GATTTGAACAAGGGTTGATTGACACCTGTAAAATTTGTTAAAACGTTCCTCTTGTAAGGA
AATACAGTGATCTTAAATTAAAAAAAAAAAAAAAAAAAAAAAGGGGGGAAAAAAAAAAAA
ATTTTCCTTGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5T6W4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T6W4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               898-1256, + strand, RNAz p=0.993779

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               898-1256, + strand, RNAz p=0.993779

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-1614, gnl|bosTau2|chr13 (22215480-22217053)
               

               
               42-1614, gnl|Hg17|chr3 (97550895-97552462)
               

               
               42-1614, gnl|Mm7|chr13 (57497160-57487138)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-1614, gnl|bosTau2|chr13 (22215480-22217053)
               

               
               42-1614, gnl|Hg17|chr3 (97550895-97552462)
               

               
               42-1614, gnl|Mm7|chr13 (57497160-57487138)

Expressed library(ies): 77 entry(ies)

More info

Expressed library(ies): 77 entry(ies)

Help | Less info


               
               med (1.39502)
               

               
               ret (1.28733)
               

               
               ebs (1.06471)
               

               
               spl (1.00229)
               

               
               tra (0.984737)
               

               
               thg (0.887536)
               

               
               eye (0.852515)
               

               
               mga (0.801025)
               

               
               col (0.780031)
               

               
               elu (0.770713)
               

               
               eli (0.759071)
               

               
               sag (0.730861)
               

               
               eru (0.720288)
               

               
               lnt (0.711541)
               

               
               lyg (0.665513)
               

               
               vin (0.665115)
               

               
               bfe (0.599431)
               

               
               liv (0.585137)
               

               
               ecc (0.575175)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               ese (0.506009)
               

               
               eje (0.494169)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               pla (0.401016)
               

               
               nbm (0.397298)
               

               
               cbr (0.383926)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               eep (0.367692)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               cbl (0.344392)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 77 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (1.39502)
               

               
               ret (1.28733)
               

               
               ebs (1.06471)
               

               
               spl (1.00229)
               

               
               tra (0.984737)
               

               
               thg (0.887536)
               

               
               eye (0.852515)
               

               
               mga (0.801025)
               

               
               col (0.780031)
               

               
               elu (0.770713)
               

               
               eli (0.759071)
               

               
               sag (0.730861)
               

               
               eru (0.720288)
               

               
               lnt (0.711541)
               

               
               lyg (0.665513)
               

               
               vin (0.665115)
               

               
               bfe (0.599431)
               

               
               liv (0.585137)
               

               
               ecc (0.575175)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               ese (0.506009)
               

               
               eje (0.494169)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               pla (0.401016)
               

               
               nbm (0.397298)
               

               
               cbr (0.383926)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               eep (0.367692)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               cbl (0.344392)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	42-1614, gnl\|bosTau2\|chr13 (22215480-22217053)
	42-1614, gnl\|Hg17\|chr3 (97550895-97552462)
	42-1614, gnl\|Mm7\|chr13 (57497160-57487138)

	med (1.39502)
	ret (1.28733)
	ebs (1.06471)
	spl (1.00229)
	tra (0.984737)
	thg (0.887536)
	eye (0.852515)
	mga (0.801025)
	col (0.780031)
	elu (0.770713)
	eli (0.759071)
	sag (0.730861)
	eru (0.720288)
	lnt (0.711541)
	lyg (0.665513)
	vin (0.665115)
	bfe (0.599431)
	liv (0.585137)
	ecc (0.575175)
	nlu (0.575043)
	hyp (0.571347)
	mgm (0.541028)
	nmm (0.531209)
	kid (0.518941)
	fhi (0.508733)
	ese (0.506009)
	eje (0.494169)
	tbr (0.462535)
	mgp (0.461361)
	fat (0.442282)
	nms (0.427716)
	amn (0.417711)
	tes (0.415628)
	nca (0.410621)
	pla (0.401016)
	nbm (0.397298)
	cbr (0.383926)
	sug (0.381874)
	bla (0.373042)
	eep (0.367692)
	pgl (0.35545)
	fty (0.351679)
	sin (0.349895)
	cbl (0.344392)
	nje (0.33184)
	nco (0.323468)
	csp (0.322373)
	fco (0.314416)
	lin (0.291206)
	csk (0.281492)
	hlv (0.278513)
	fce (0.271592)
	ste (0.270416)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	fli (0.202881)
	fcc (0.197785)
	aor (0.195274)
	ldo (0.194005)
	gul (0.177588)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	cut (0.169924)
	cje (0.165235)
	cli (0.152812)
	cag (0.151194)
	lun (0.150489)
	isp (0.150376)
	ski (0.146735)
	pty (0.142714)
	cov (0.132153)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)