Ss1.1-Pig4-TMW8060A07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATAGATGCAAAGCTTTGTATTTACAGCAACGGATCTTTCCGCTTATGCTCAGCAAAAAT TGTCCAGATAAATTTTCATTCTCAGCTTGCAAGTTTAATATACAGAAGAGCAAAGAAGGA ACAGGAAGAGTGGTAATGTGGAAAATGGGAATCAGGAACAGCTTTACCATGGAGGCCACT TTCTGTGGATCTACCCTGGGTAATAAAAGAGGCACTCACTTCAATACAAAAGACTTGGAG TCGATGGGATATCATTTTTGTGATTCTCTCTTGGACTACTGTGATCCAGACCGAACCAAG TATTATAAATGCCTAAAAGAACTAGAAGAAATGGAAAAACATATAAACTTGGAAAAAGTC CTTGATGATTCAGATACTTCTCTGAAAGAAGTTACATTGGATCTAGAGTCTAGTAGCCAT GGCTCTGACAGTTCAGAATCCAATGACTCTCAGACTTACCTCCTCAAGTTAAGTTCTCAG ATAAAAAACAAGAAAAAACATTTGAAAACAAAGAAGGAAAGAAATTCTACCATAGCAAGC CATCAAAACACCAGAGAAGAGCAAGAGGTTTGTGATAAAGGACGTTTAGCTCAGAGACAC AAAGAATCAGATTCTGATGTGAAAGGTAATGTTCTGCTCCTCCTCTCATCAAGCAATTCG TGTCCTCAACAAATACTTCTTTGTGCTACAACTTTGAGGTTCTCACTGTGCTTTGTGAAG TGCAGTGTTACAGGCGCAATGCCAGTTGTCTAGACAGGGCTCCAAGGGAGCACAGAGAAA GGACAGGTCACTTACATTGGCGGGTTGGACTGAATGGTCCACATTCTTGAGAGAGATCTC GATTAGAAAGATTTTTCCTGGAGTTCCCACTGTGGCGCAGTTGGATTGGCGATGTTTTGT GAGCGCTGGGACACAGGTTCCATCCCCAGCCCAGCACAGTGGGTTAAGGATCTGGCATTG CCACAGCTGCAGCTTAGGTTACAACTGCAGTATAGATCTGATGCTTGGCCTGGGAACTTC CATTTGCTGCAGGGTGGCCAAAAATGGAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAGA TTTTTCCCAAAACAGAATATAGGAGTTTTATGGTTTAAAAAAACATGTTTTGTTTCATAA CTTGATAAAGGACAATGAGCCCAGGAGGGTTAAACTTTGGATTATTCATTTGCTTCTGTA GGAATCTGCTAAGTCTGATATTAATCTCTAACATTTTTGGTATTTTTTTCCTAATTTTTA TCTTGTTATCCTTACTTGGGGTCTTCTGAAAAATTCTCATAATTTAAACAGTATTTTAAT TTTGTCTAAAATAATTATTTAATTTTATGTGTACCTATATTAATTTTTGGTACATTTATA CCACCTTTATTTTCAGAAAAGATTTCAGGTAACCTATTTAAAAATATATATATATGTACA TATATCCATTTAGTTTATGATGCAGCAGGATAATGTAAAATAGAAATGGAATAAGAACAA CACCTAGGAGAGAATTTTATTGTAATTAAGATGGTTAATTCACTTGAAGTCTAAATTATT CTTTCTCATAGTGATAAGCCAAGCAAATCAGTCACTTTTTGTATGTAACTTTTATATATT CTTTTGAAATTTAATGTCAAAAATTAAAAATAAAGGACACATTTTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATAGATGCAAAGCTTTGTATTTACAGCAACGGATCTTTCCGCTTATGCTCAGCAAAAAT TGTCCAGATAAATTTTCATTCTCAGCTTGCAAGTTTAATATACAGAAGAGCAAAGAAGGA ACAGGAAGAGTGGTAATGTGGAAAATGGGAATCAGGAACAGCTTTACCATGGAGGCCACT TTCTGTGGATCTACCCTGGGTAATAAAAGAGGCACTCACTTCAATACAAAAGACTTGGAG TCGATGGGATATCATTTTTGTGATTCTCTCTTGGACTACTGTGATCCAGACCGAACCAAG TATTATAAATGCCTAAAAGAACTAGAAGAAATGGAAAAACATATAAACTTGGAAAAAGTC CTTGATGATTCAGATACTTCTCTGAAAGAAGTTACATTGGATCTAGAGTCTAGTAGCCAT GGCTCTGACAGTTCAGAATCCAATGACTCTCAGACTTACCTCCTCAAGTTAAGTTCTCAG ATAAAAAACAAGAAAAAACATTTGAAAACAAAGAAGGAAAGAAATTCTACCATAGCAAGC CATCAAAACACCAGAGAAGAGCAAGAGGTTTGTGATAAAGGACGTTTAGCTCAGAGACAC AAAGAATCAGATTCTGATGTGAAAGGTAATGTTCTGCTCCTCCTCTCATCAAGCAATTCG TGTCCTCAACAAATACTTCTTTGTGCTACAACTTTGAGGTTCTCACTGTGCTTTGTGAAG TGCAGTGTTACAGGCGCAATGCCAGTTGTCTAGACAGGGCTCCAAGGGAGCACAGAGAAA GGACAGGTCACTTACATTGGCGGGTTGGACTGAATGGTCCACATTCTTGAGAGAGATCTC GATTAGAAAGATTTTTCCTGGAGTTCCCACTGTGGCGCAGTTGGATTGGCGATGTTTTGT GAGCGCTGGGACACAGGTTCCATCCCCAGCCCAGCACAGTGGGTTAAGGATCTGGCATTG CCACAGCTGCAGCTTAGGTTACAACTGCAGTATAGATCTGATGCTTGGCCTGGGAACTTC CATTTGCTGCAGGGTGGCCAAAAATGGAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAGA TTTTTCCCAAAACAGAATATAGGAGTTTTATGGTTTAAAAAAACATGTTTTGTTTCATAA CTTGATAAAGGACAATGAGCCCAGGAGGGTTAAACTTTGGATTATTCATTTGCTTCTGTA GGAATCTGCTAAGTCTGATATTAATCTCTAACATTTTTGGTATTTTTTTCCTAATTTTTA TCTTGTTATCCTTACTTGGGGTCTTCTGAAAAATTCTCATAATTTAAACAGTATTTTAAT TTTGTCTAAAATAATTATTTAATTTTATGTGTACCTATATTAATTTTTGGTACATTTATA CCACCTTTATTTTCAGAAAAGATTTCAGGTAACCTATTTAAAAATATATATATATGTACA TATATCCATTTAGTTTATGATGCAGCAGGATAATGTAAAATAGAAATGGAATAAGAACAA CACCTAGGAGAGAATTTTATTGTAATTAAGATGGTTAATTCACTTGAAGTCTAAATTATT CTTTCTCATAGTGATAAGCCAAGCAAATCAGTCACTTTTTGTATGTAACTTTTATATATT CTTTTGAAATTTAATGTCAAAAATTAAAAATAAAGGACACATTTTATA |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 73-223, gnl|bosTau2|chr4 (54142935-54143084) | |
| 73-223, gnl|canFam2|chr16 (16006217-16006059) | |
| 73-223, gnl|danRer3|chr25 (23972379-23972246) | |
| 73-223, gnl|dasNov1|scaffold_149923 (685-527) | |
| 73-223, gnl|echTel1|scaffold_317307 (46801-46646) | |
| 73-223, gnl|fr1|chrUn (6850926-6850772) | |
| 73-223, gnl|galGal2|chr1 (44694484-44694344) | |
| 73-223, gnl|hg17|chr7 (134186027-134186185) | |
| 73-223, gnl|Hg17|chr7 (134186031-134186180) | |
| 73-223, gnl|loxAfr1|scaffold_15265 (1157-1314) | |
| 73-223, gnl|mm7|chr6 (34744030-34744182) | |
| 73-223, gnl|Mm7|chr6 (34744034-34744177) | |
| 73-223, gnl|monDom2|scaffold_22 (8597564-8597410) | |
| 73-223, gnl|oryCun1|scaffold_197827 (73388-73230) | |
| 73-223, gnl|panTro1|chr6 (136878069-136878227) | |
| 73-223, gnl|rheMac2|chr3 (172536396-172536554) | |
| 73-223, gnl|rn3|chr4 (62470629-62470781) | |
| 73-223, gnl|tetNig1|chr13 (6343679-6343543) | |
| 73-223, gnl|xenTro1|scaffold_332 (123702-123534) | |
| 296-413, gnl|bosTau2|chr4 (54144347-54144464) | |
| 296-413, gnl|canFam2|chr16 (16004410-16004234) | |
| 296-413, gnl|dasNov1|scaffold_196181 (615-784) | |
| 296-413, gnl|echTel1|scaffold_317307 (44611-44428) | |
| 296-413, gnl|galGal2|chr1 (44693584-44693438) | |
| 296-413, gnl|hg17|chr7 (134187777-134187960) | |
| 296-413, gnl|Hg17|chr7 (134187800-134187917) | |
| 296-413, gnl|loxAfr1|scaffold_15265 (5787-5970) | |
| 296-413, gnl|mm7|chr6 (34745886-34746063) | |
| 296-413, gnl|Mm7|chr6 (34745908-34746025) | |
| 296-413, gnl|monDom2|scaffold_22 (8592540-8592384) | |
| 296-413, gnl|oryCun1|scaffold_197827 (71102-70914) | |
| 296-413, gnl|panTro1|chr6 (136879816-136879999) | |
| 296-413, gnl|rheMac2|chr3 (172537754-172537938) | |
| 296-413, gnl|rn3|chr4 (62472302-62472479) | |
| 566-717, gnl|bosTau2|chr4 (54164139-54164286) | |
| 566-717, gnl|canFam2|chr16 (15993025-15992806) | |
| 566-717, gnl|echTel1|scaffold_253656 (5968-5629) | |
| 566-717, gnl|hg17|chr7 (134222164-134222389) | |
| 566-717, gnl|Hg17|chr7 (134222208-134222364) | |
| 566-717, gnl|loxAfr1|scaffold_195567 (569-343) | |
| 566-717, gnl|mm7|chr6 (34759347-34759554) | |
| 566-717, gnl|Mm7|chr6 (34759392-34759543) | |
| 566-717, gnl|panTro1|chr6 (136914151-136914376) | |
| 566-717, gnl|rheMac2|chr3 (172564723-172564948) | |
| 566-717, gnl|rn3|chr4 (62485968-62486158) | |
| 1235-1441, gnl|bosTau2|chr4 (54164680-54164879) | |
| 1235-1441, gnl|Hg17|chr7 (134222752-134222964) | |
| 1459-1666, gnl|bosTau2|chr4 (54165211-54165418) | |
| 1459-1666, gnl|Hg17|chr7 (134222988-134223229) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-223, gnl|bosTau2|chr4 (54142935-54143084) | |
| 73-223, gnl|canFam2|chr16 (16006217-16006059) | |
| 73-223, gnl|danRer3|chr25 (23972379-23972246) | |
| 73-223, gnl|dasNov1|scaffold_149923 (685-527) | |
| 73-223, gnl|echTel1|scaffold_317307 (46801-46646) | |
| 73-223, gnl|fr1|chrUn (6850926-6850772) | |
| 73-223, gnl|galGal2|chr1 (44694484-44694344) | |
| 73-223, gnl|hg17|chr7 (134186027-134186185) | |
| 73-223, gnl|Hg17|chr7 (134186031-134186180) | |
| 73-223, gnl|loxAfr1|scaffold_15265 (1157-1314) | |
| 73-223, gnl|mm7|chr6 (34744030-34744182) | |
| 73-223, gnl|Mm7|chr6 (34744034-34744177) | |
| 73-223, gnl|monDom2|scaffold_22 (8597564-8597410) | |
| 73-223, gnl|oryCun1|scaffold_197827 (73388-73230) | |
| 73-223, gnl|panTro1|chr6 (136878069-136878227) | |
| 73-223, gnl|rheMac2|chr3 (172536396-172536554) | |
| 73-223, gnl|rn3|chr4 (62470629-62470781) | |
| 73-223, gnl|tetNig1|chr13 (6343679-6343543) | |
| 73-223, gnl|xenTro1|scaffold_332 (123702-123534) | |
| 296-413, gnl|bosTau2|chr4 (54144347-54144464) | |
| 296-413, gnl|canFam2|chr16 (16004410-16004234) | |
| 296-413, gnl|dasNov1|scaffold_196181 (615-784) | |
| 296-413, gnl|echTel1|scaffold_317307 (44611-44428) | |
| 296-413, gnl|galGal2|chr1 (44693584-44693438) | |
| 296-413, gnl|hg17|chr7 (134187777-134187960) | |
| 296-413, gnl|Hg17|chr7 (134187800-134187917) | |
| 296-413, gnl|loxAfr1|scaffold_15265 (5787-5970) | |
| 296-413, gnl|mm7|chr6 (34745886-34746063) | |
| 296-413, gnl|Mm7|chr6 (34745908-34746025) | |
| 296-413, gnl|monDom2|scaffold_22 (8592540-8592384) | |
| 296-413, gnl|oryCun1|scaffold_197827 (71102-70914) | |
| 296-413, gnl|panTro1|chr6 (136879816-136879999) | |
| 296-413, gnl|rheMac2|chr3 (172537754-172537938) | |
| 296-413, gnl|rn3|chr4 (62472302-62472479) | |
| 566-717, gnl|bosTau2|chr4 (54164139-54164286) | |
| 566-717, gnl|canFam2|chr16 (15993025-15992806) | |
| 566-717, gnl|echTel1|scaffold_253656 (5968-5629) | |
| 566-717, gnl|hg17|chr7 (134222164-134222389) | |
| 566-717, gnl|Hg17|chr7 (134222208-134222364) | |
| 566-717, gnl|loxAfr1|scaffold_195567 (569-343) | |
| 566-717, gnl|mm7|chr6 (34759347-34759554) | |
| 566-717, gnl|Mm7|chr6 (34759392-34759543) | |
| 566-717, gnl|panTro1|chr6 (136914151-136914376) | |
| 566-717, gnl|rheMac2|chr3 (172564723-172564948) | |
| 566-717, gnl|rn3|chr4 (62485968-62486158) | |
| 1235-1441, gnl|bosTau2|chr4 (54164680-54164879) | |
| 1235-1441, gnl|Hg17|chr7 (134222752-134222964) | |
| 1459-1666, gnl|bosTau2|chr4 (54165211-54165418) | |
| 1459-1666, gnl|Hg17|chr7 (134222988-134223229) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.123092) |