Non-Coding RNA Search

Ss1.1-Pig4-TMW8060A12.3

Sequence:


               
               GTGCTTATTTCTGGAACAACTTAGGGCAGAGGTTCAATATTCACTGGGGAGAGGAAGGCA
GTAATTAACTTTGTATTTCTTCTTTTCTTCAAAAGAAAAGAAGCTTGACCAGTCTGTCAT
TAATTTCTCAAAATTTGTTATTTGGGTGTCTTCTAAAGGCTCAGAATGTTTTTTTCCTTC
ACTGTGTGGTAAATTTTAGGCATGATCTAAAAGGGTATCCAAATGATGCTTCTTGTTACT
CTGAGCAGTAGTTGCCCATGTTTCGTCTCTTCAGGCTAAATTAATCTGGCCTCCAAATGA
CTGCTCAGTCCAGACAGGTCTGTGCTGAAAGTCTGTGAATTCCCTGGAGGATATTCCAGC
TATTGTAACTCAAAAATTGGTCCTACCCTACACAGAGCTCCTTGACAAAACAGAGGCTTT
CAAAAGACTCAGCACTGTTTGGTCTTTAAAGTGGAGTTTTGTTTATGGGGTTTGTTTATA
GGCCAGTAGCAAATGTTGCTTTAACATTACTGATCAGTTTCACTAATAACACAAAATTCG
CATGTCCTGAAAGTGAGACAAAATCATCCTTGTCTCTTTTGGCCTGCTTTGCTAATGCCT
ATACCTGCAGAAGGTTCACACTGTAAGAATAGTTCTTGTAGGTAGGAGGTTAGAGTCTCC
ACTCTCCCACATAATTTGCTAAACCCTCTGCATACTAAAACCCTTACTTAGCACTCGAAT
ACCTTTAGACTTTACCACAGTTATTAATCTGCTTGATGTGAAACAACTTCCGTATTTTTC
TGGCTAATGTATAAGCATAGGAGAACATCTTGTCAGAAATGTATTGTCTGAAACATATAG
ATAGGAGGAACTGCTTTTTAAAAAGTTTTGTTTTTGTATTCATTTCAGATAGAACAAGTT
GAAGGAATTATTAGTTAAAGTAGAGGTCAAATGATTTAAATCAGAACTTGTGTGTGAATG
CTTTCGTGTGTGTGTATTTATTGAAGAAAATGTGTTTCACTATGAGAATTGGAAAATTGT
ATATTTGATTGTAATTATATTTTTATTTAAAAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTTATTTCTGGAACAACTTAGGGCAGAGGTTCAATATTCACTGGGGAGAGGAAGGCA
GTAATTAACTTTGTATTTCTTCTTTTCTTCAAAAGAAAAGAAGCTTGACCAGTCTGTCAT
TAATTTCTCAAAATTTGTTATTTGGGTGTCTTCTAAAGGCTCAGAATGTTTTTTTCCTTC
ACTGTGTGGTAAATTTTAGGCATGATCTAAAAGGGTATCCAAATGATGCTTCTTGTTACT
CTGAGCAGTAGTTGCCCATGTTTCGTCTCTTCAGGCTAAATTAATCTGGCCTCCAAATGA
CTGCTCAGTCCAGACAGGTCTGTGCTGAAAGTCTGTGAATTCCCTGGAGGATATTCCAGC
TATTGTAACTCAAAAATTGGTCCTACCCTACACAGAGCTCCTTGACAAAACAGAGGCTTT
CAAAAGACTCAGCACTGTTTGGTCTTTAAAGTGGAGTTTTGTTTATGGGGTTTGTTTATA
GGCCAGTAGCAAATGTTGCTTTAACATTACTGATCAGTTTCACTAATAACACAAAATTCG
CATGTCCTGAAAGTGAGACAAAATCATCCTTGTCTCTTTTGGCCTGCTTTGCTAATGCCT
ATACCTGCAGAAGGTTCACACTGTAAGAATAGTTCTTGTAGGTAGGAGGTTAGAGTCTCC
ACTCTCCCACATAATTTGCTAAACCCTCTGCATACTAAAACCCTTACTTAGCACTCGAAT
ACCTTTAGACTTTACCACAGTTATTAATCTGCTTGATGTGAAACAACTTCCGTATTTTTC
TGGCTAATGTATAAGCATAGGAGAACATCTTGTCAGAAATGTATTGTCTGAAACATATAG
ATAGGAGGAACTGCTTTTTAAAAAGTTTTGTTTTTGTATTCATTTCAGATAGAACAAGTT
GAAGGAATTATTAGTTAAAGTAGAGGTCAAATGATTTAAATCAGAACTTGTGTGTGAATG
CTTTCGTGTGTGTGTATTTATTGAAGAAAATGTGTTTCACTATGAGAATTGGAAAATTGT
ATATTTGATTGTAATTATATTTTTATTTAAAAAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               372-490, + strand, RNAz p=0.930035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-490, + strand, RNAz p=0.930035

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               33-346, gnl|bosTau2|chr17 (38775402-38775707)
               

               
               33-346, gnl|Hg17|chr12 (110796582-110796881)
               


               
               372-1049, gnl|bosTau2|chr17 (38775944-38776613)
               

               
               372-1049, gnl|Hg17|chr12 (110796942-110797985)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-346, gnl|bosTau2|chr17 (38775402-38775707)
               

               
               33-346, gnl|Hg17|chr12 (110796582-110796881)
               


               
               372-1049, gnl|bosTau2|chr17 (38775944-38776613)
               

               
               372-1049, gnl|Hg17|chr12 (110796942-110797985)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)

	33-346, gnl\|bosTau2\|chr17 (38775402-38775707)
	33-346, gnl\|Hg17\|chr12 (110796582-110796881)

	372-1049, gnl\|bosTau2\|chr17 (38775944-38776613)
	372-1049, gnl\|Hg17\|chr12 (110796942-110797985)

	lyg (0.266205)
	tra (0.246184)
	pan (0.23596)
	fcc (0.197785)
	mgm (0.180343)
	mga (0.160205)
	fco (0.157208)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	cbl (0.114797)