Non-Coding RNA Search

Ss1.1-Pig4-TMW8060B21.3

Sequence:


               
               TTTGTGGTTATTGCCTTCATCTTTTAGTTGGTCAGCTTTTCCCACATCTTCAGGCACTGA
GTTTGAGAGAGGCAGAATGTCATTCTTACAGAAGGAATTTGTGAACATTTCTGTCAAAGG
CTGTGAAACTGCTAGATGTGTATCTTCTGGGCTGACTTTAAAAACTGTCTCCAAGCACTG
AATTGCAACTTCCAAACTTTCCTGCTCATCTGAAGTATAAGCATCCATCTGACTTTGTTC
CCGTAAGAAACGAATAACTGCATAAACTAGGTGCTTAATGGATGACATTTTAAAAGCTTA
AACACTTTTCCAGGCAAGAGGACGCGAGACGGTGGCAACGGGCCCCGGGGGTCTGTAAGC
CGGTCCGCCTGCCCCCTGGTCCTCGGGCTTGAGTCTGGCCACGAATCGCAGCACTGCCCA
CGGTGGCACAAACTTCCCCGGCTCCCAGGCCGCCGCCGCCGCCCCTCAGCCCACCCGGCT
GTGCTCTCCGCTCCCAGACGCCGGGTCTTGACAGAACCGCCCCCCGGGCGGTGCTAGAGG
CACGGGGCGGGGTTCAGGCCTGGGCGGGGCCTGGGCGGGCCTGAAGTGGGCGCCGGCGTG
GGACTGCCGCACGTGGGAAGGCGCGGGCAGAGCGGGCCGCAGCCGCCGCTGTTGCCTCCT
TTGCTAGGCCGCCGCAAGGCTTGCCAGCGCCCCGCATACCCCACCCCCAAACCAGAGGAC
AGCGCGCCCGGAGCCGCCGTCGCCTCTCGGCGCTCCCATGATCGTCCGGTGCCTTTCGGC
TGCGAGACGCCTCCACGGGGTTGGTGGTTCCGGGATTTTATTGAGAATGACTTTAGGGAA
AGAAGCAATGTCTCCTCTTCAGGCAATGTCTTCCTATACTGTGGATGGCAGAAATGTTTT
AAGATGGGATCTTTCACCAGAGCAAATTAAAAGAAGAACTGAGGAGCTGATTGCGCAGAC
CAAACAGGTGTATGATGATATTGGAATGCTTGACATTGAAGAGGTAACTTATGAGAACTG
TTTGCAGGCACTGGCAGATGTGGAAGTGAAGTATATAGTGGAACGAACCATGCTAGACTT
TCCCCAGCATGCCTCCTCTGACAAAGAAGTACGAGCAGCAAGTACAGAAGCAGACAAAAG
ACTTTCTCGTTTTGATATTGAGATGAGCATGAGAGAAGATATCTTTCTGAGAATTGTTCG
TTTAAAGGTTAAGGATCCAGTGTTGTTTCTGCAGCAGTGCAAGTTCCATCCCTGGCCTGG
CACAGCGTGTTAAGAATCTGTCATTGGAGTTCCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTGGTTATTGCCTTCATCTTTTAGTTGGTCAGCTTTTCCCACATCTTCAGGCACTGA
GTTTGAGAGAGGCAGAATGTCATTCTTACAGAAGGAATTTGTGAACATTTCTGTCAAAGG
CTGTGAAACTGCTAGATGTGTATCTTCTGGGCTGACTTTAAAAACTGTCTCCAAGCACTG
AATTGCAACTTCCAAACTTTCCTGCTCATCTGAAGTATAAGCATCCATCTGACTTTGTTC
CCGTAAGAAACGAATAACTGCATAAACTAGGTGCTTAATGGATGACATTTTAAAAGCTTA
AACACTTTTCCAGGCAAGAGGACGCGAGACGGTGGCAACGGGCCCCGGGGGTCTGTAAGC
CGGTCCGCCTGCCCCCTGGTCCTCGGGCTTGAGTCTGGCCACGAATCGCAGCACTGCCCA
CGGTGGCACAAACTTCCCCGGCTCCCAGGCCGCCGCCGCCGCCCCTCAGCCCACCCGGCT
GTGCTCTCCGCTCCCAGACGCCGGGTCTTGACAGAACCGCCCCCCGGGCGGTGCTAGAGG
CACGGGGCGGGGTTCAGGCCTGGGCGGGGCCTGGGCGGGCCTGAAGTGGGCGCCGGCGTG
GGACTGCCGCACGTGGGAAGGCGCGGGCAGAGCGGGCCGCAGCCGCCGCTGTTGCCTCCT
TTGCTAGGCCGCCGCAAGGCTTGCCAGCGCCCCGCATACCCCACCCCCAAACCAGAGGAC
AGCGCGCCCGGAGCCGCCGTCGCCTCTCGGCGCTCCCATGATCGTCCGGTGCCTTTCGGC
TGCGAGACGCCTCCACGGGGTTGGTGGTTCCGGGATTTTATTGAGAATGACTTTAGGGAA
AGAAGCAATGTCTCCTCTTCAGGCAATGTCTTCCTATACTGTGGATGGCAGAAATGTTTT
AAGATGGGATCTTTCACCAGAGCAAATTAAAAGAAGAACTGAGGAGCTGATTGCGCAGAC
CAAACAGGTGTATGATGATATTGGAATGCTTGACATTGAAGAGGTAACTTATGAGAACTG
TTTGCAGGCACTGGCAGATGTGGAAGTGAAGTATATAGTGGAACGAACCATGCTAGACTT
TCCCCAGCATGCCTCCTCTGACAAAGAAGTACGAGCAGCAAGTACAGAAGCAGACAAAAG
ACTTTCTCGTTTTGATATTGAGATGAGCATGAGAGAAGATATCTTTCTGAGAATTGTTCG
TTTAAAGGTTAAGGATCCAGTGTTGTTTCTGCAGCAGTGCAAGTTCCATCCCTGGCCTGG
CACAGCGTGTTAAGAATCTGTCATTGGAGTTCCCGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               300-799, gnl|bosTau2|chr20 (8721084-8720605)
               

               
               300-799, gnl|Hg17|chr5 (65053489-65053998)
               

               
               300-799, gnl|Mm7|chr13 (101247689-101247124)
               


               
               800-1058, gnl|bosTau2|chr20 (8682996-8682738)
               

               
               800-1058, gnl|Hg17|chr5 (65090151-65090409)
               

               
               800-1058, gnl|Mm7|chr13 (101210730-101210472)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               300-799, gnl|bosTau2|chr20 (8721084-8720605)
               

               
               300-799, gnl|Hg17|chr5 (65053489-65053998)
               

               
               300-799, gnl|Mm7|chr13 (101247689-101247124)
               


               
               800-1058, gnl|bosTau2|chr20 (8682996-8682738)
               

               
               800-1058, gnl|Hg17|chr5 (65090151-65090409)
               

               
               800-1058, gnl|Mm7|chr13 (101210730-101210472)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cmu (0.186393)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               lun (0.150489)

	300-799, gnl\|bosTau2\|chr20 (8721084-8720605)
	300-799, gnl\|Hg17\|chr5 (65053489-65053998)
	300-799, gnl\|Mm7\|chr13 (101247689-101247124)

	800-1058, gnl\|bosTau2\|chr20 (8682996-8682738)
	800-1058, gnl\|Hg17\|chr5 (65090151-65090409)
	800-1058, gnl\|Mm7\|chr13 (101210730-101210472)