Ss1.1-Pig4-TMW8060C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGGGCGGTTGGGGTGCGCGCCGGCCGGAGTGGACGCCGCCGCGGCCGCCATGCAGCTG ACGGTGAAGGCGCTCCAGGGCCGCGAGTGCAGCCTGCAGGTGTCGGAGGACGAGCTGGTG TCCACGCTGAAACATCTGGTCTCCGAGAAGCTAAACGTCCCCGTGCGCCAGCAGCGGCTG CTGTTCAAGGGCAAGGCCCTAGCAGATGGGAAAAGACTCTCCGATTACAGCGTTGGGCCC AATTCCAAGCTCAACCTAGTGGTCAAACCGCTGGAGAAGGTGTTGCTGGAAGAAAGCGCG GCCCGGAGACTGGCTGAGGCCCCGCCCCCGCCCCCAGCCGCCTGGCAGCTGGTCTCCAAG GTCTTGGGCCGCCACTTCAGCGCTGCAGATGCCAGCAGAGTCCTGGATCAACTGCAGAGG GATTACGAGCGGTCCCTGAGCCGGCTGACCCTGGATGACATCGAGCGCTTGGCTAGCCGC TTCCTGCACCCCGAAGTGACTGAAGCTATGGAGAAGGGGTTCTCCAACGTCTGCTTCATC CCAGGCCTCTGCCTCAGGATCAGGAGATGGTTGCCTACAGCTGCCACCACATCCCTCGAT CACAGCCAGCAAGGAGCACCTTCGCGGCCTGTAGTGTAGCCTCTTCCTCAGATGCCCCAG CAAATAAACGCTGTCCTTTCAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGGGCGGTTGGGGTGCGCGCCGGCCGGAGTGGACGCCGCCGCGGCCGCCATGCAGCTG ACGGTGAAGGCGCTCCAGGGCCGCGAGTGCAGCCTGCAGGTGTCGGAGGACGAGCTGGTG TCCACGCTGAAACATCTGGTCTCCGAGAAGCTAAACGTCCCCGTGCGCCAGCAGCGGCTG CTGTTCAAGGGCAAGGCCCTAGCAGATGGGAAAAGACTCTCCGATTACAGCGTTGGGCCC AATTCCAAGCTCAACCTAGTGGTCAAACCGCTGGAGAAGGTGTTGCTGGAAGAAAGCGCG GCCCGGAGACTGGCTGAGGCCCCGCCCCCGCCCCCAGCCGCCTGGCAGCTGGTCTCCAAG GTCTTGGGCCGCCACTTCAGCGCTGCAGATGCCAGCAGAGTCCTGGATCAACTGCAGAGG GATTACGAGCGGTCCCTGAGCCGGCTGACCCTGGATGACATCGAGCGCTTGGCTAGCCGC TTCCTGCACCCCGAAGTGACTGAAGCTATGGAGAAGGGGTTCTCCAACGTCTGCTTCATC CCAGGCCTCTGCCTCAGGATCAGGAGATGGTTGCCTACAGCTGCCACCACATCCCTCGAT CACAGCCAGCAAGGAGCACCTTCGCGGCCTGTAGTGTAGCCTCTTCCTCAGATGCCCCAG CAAATAAACGCTGTCCTTTCAGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 242-361, - strand, RNAz p=0.545574 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 242-361, - strand, RNAz p=0.545574 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 203-421, gnl|bosTau2|chrX (14687044-14687262) | |
| 203-421, gnl|canFam2|chrX (125240486-125240731) | |
| 203-421, gnl|dasNov1|scaffold_83408 (323-56) | |
| 203-421, gnl|echTel1|scaffold_279365 (43689-43419) | |
| 203-421, gnl|hg17|chrX (153277787-153278026) | |
| 203-421, gnl|Hg17|chrX (153278025-153277813) | |
| 203-421, gnl|loxAfr1|scaffold_37247 (69-342) | |
| 203-421, gnl|mm7|chrX (69754321-69754562) | |
| 203-421, gnl|Mm7|chrX (69754561-69754349) | |
| 203-421, gnl|monDom2|scaffold_197 (359901-360142) | |
| 203-421, gnl|panTro1|chrX_random (30060425-30060186) | |
| 203-421, gnl|rheMac2|chrX (152510472-152510711) | |
| 203-421, gnl|rn3|chrX (160315793-160315552) | |
| 521-679, gnl|bosTau2|chrX (14688921-14689079) | |
| 521-679, gnl|canFam2|chrX (125238559-125238845) | |
| 521-679, gnl|hg17|chrX (153275691-153275952) | |
| 521-679, gnl|Hg17|chrX (153275923-153275774) | |
| 521-679, gnl|loxAfr1|scaffold_59604 (13769-14044) | |
| 521-679, gnl|mm7|chrX (69752291-69752561) | |
| 521-679, gnl|Mm7|chrX (69752530-69752375) | |
| 521-679, gnl|oryCun1|scaffold_91913 (1871-1606) | |
| 521-679, gnl|panTro1|chrX (158548096-158548357) | |
| 521-679, gnl|rheMac2|chrX (152508396-152508661) | |
| 521-679, gnl|rn3|chrX (160317840-160317573) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 203-421, gnl|bosTau2|chrX (14687044-14687262) | |
| 203-421, gnl|canFam2|chrX (125240486-125240731) | |
| 203-421, gnl|dasNov1|scaffold_83408 (323-56) | |
| 203-421, gnl|echTel1|scaffold_279365 (43689-43419) | |
| 203-421, gnl|hg17|chrX (153277787-153278026) | |
| 203-421, gnl|Hg17|chrX (153278025-153277813) | |
| 203-421, gnl|loxAfr1|scaffold_37247 (69-342) | |
| 203-421, gnl|mm7|chrX (69754321-69754562) | |
| 203-421, gnl|Mm7|chrX (69754561-69754349) | |
| 203-421, gnl|monDom2|scaffold_197 (359901-360142) | |
| 203-421, gnl|panTro1|chrX_random (30060425-30060186) | |
| 203-421, gnl|rheMac2|chrX (152510472-152510711) | |
| 203-421, gnl|rn3|chrX (160315793-160315552) | |
| 521-679, gnl|bosTau2|chrX (14688921-14689079) | |
| 521-679, gnl|canFam2|chrX (125238559-125238845) | |
| 521-679, gnl|hg17|chrX (153275691-153275952) | |
| 521-679, gnl|Hg17|chrX (153275923-153275774) | |
| 521-679, gnl|loxAfr1|scaffold_59604 (13769-14044) | |
| 521-679, gnl|mm7|chrX (69752291-69752561) | |
| 521-679, gnl|Mm7|chrX (69752530-69752375) | |
| 521-679, gnl|oryCun1|scaffold_91913 (1871-1606) | |
| 521-679, gnl|panTro1|chrX (158548096-158548357) | |
| 521-679, gnl|rheMac2|chrX (152508396-152508661) | |
| 521-679, gnl|rn3|chrX (160317840-160317573) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nca (0.410621) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.410621) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |