Non-Coding RNA Search

Ss1.1-Pig4-TMW8060C10.3

Sequence:


               
               GGAGCCCCCAGCAGCCAGTGGCACTGTGGGTGCCCAGAGGAGGGGGCTGCAGAGAGTTTC
AGGTTGGCAAAGGCGAGGAATTGGGGGCTCTCGGGCCAGTGACCCCGAGCCCGCATCTCT
ATCCTTGTGTCTGCTTGGGTGAACTCACTTAGTTCTTAATCCCACCACTGACAGCACATG
CTACCCTATTGTGATTAAAATGTGGTTTGTGTCCACATCCCTGGGAGTCAGCTGGAGGCC
AGCCCTGGCTGGGCCCGAAGGCTGACTCTGGCCTGCCAGCAGTGCAGGCAGGAATCTCCC
AGGTGGCCTGGGGCTGCCCCCCAACCCTACCCCTTACCCTCACCCCCGAAGCTCTGGCCT
TCTGGTCAGACTGAAGGCAGCTCGTCTGGCCTCATCCAAATCTCTAAAAAGATGTTGAAC
CAATCTACTTTCTAGAACCCCTAGGAGGGAGCTTAGGGAACACTTATTTTAGCAGCATAC
CCCGAAATTAAGGGTTGACATTAAGTGATGGCTTGGGGGAAGGGGGAGCTAGTTAGGCAA
TCTGAGCTGAAGGCAGGCTTGAGGCCCAGGTGGGCTGCTAAGGCATCCGTGGGAGGCAGC
CAGGTTTTAGTGCAGGGGAGGAAATGCTTCTGGTCCCCACCTGGGGACCAGCAGAGGCCC
AGTGGGCTGGGGTGCCCAGGACCAGGGTGTGGGTGGAAGGAGGGACAGGGGTTCTAAAGG
TGCCAACTGGAAGGCAGAGAGAAAGGGTGCTTTCGAATGAAGGGTGCCCGGAAAACAGGG
AAGATGTAGGCCGTCTGCTCCAGTGCCCTCGCGATTCAGAACCTCAGGCGTTCTACCTCT
CCTTTCTGCAGCCGGCAGCCTACACCTGAGGCTGGCTGTCCTTCACCCGAGGGACCGAGG
AGCTCCTGGGACTGGTGTTTGCAGTCCCCGTGAGTGTGACTCTGACTTGCCTGCCAGACC
CGCCTTGAACTTCTGACCGTGCCAGGGCAGTTTCGGTTTTGAGAAGACGAAGCGTCACTT
TCTCCTTAGTTTCACTCCTGGAGGGTCTTCATCCCACGCCACCTGTGCCACTTGCATCAG
GCCCATCGACACAGCGGCAGTGCGGGCGAGGGTCACGGGCACGGTGGGGGTCTCTGGGGA
AAAGAGAAAGTGCCTGCAGAACTGGTGAACCATACATAATAGCTCTCACTGTTCTTATTT
CTCAATAGCTACTTTTTTTAGCTTAGACACCAGAGCCACACACTCCAATGGCTTAGTTAA
GTTATGACCTCTCATGGAATTCTTTCTGAATAGCCCGACTGTTGCATCCCAGTTTTCTGA
CTCGTCAATCAAGTTAACCTTTCATCACCGCAGAAGCAACAGGAGGGGGGTGGGGAGGGA
ACTCGACACTGAGCCACTAAAATACGGACTAATTTTTCAGACACATCTTCAAATGGACTG
TGCTACTGTTTTTGCCTCAAAGCTACCAAGTTTGTGCAATAAGTGGAAGGGATGTCATCC
CTGTTCAATAAAGGCTGAATGACATTCAAGGTGATTTTCTAGACCACTGAGAAAATCTTT
ATTTACAATAAATTTCAATAAAATTTGCATAAATATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCCCCAGCAGCCAGTGGCACTGTGGGTGCCCAGAGGAGGGGGCTGCAGAGAGTTTC
AGGTTGGCAAAGGCGAGGAATTGGGGGCTCTCGGGCCAGTGACCCCGAGCCCGCATCTCT
ATCCTTGTGTCTGCTTGGGTGAACTCACTTAGTTCTTAATCCCACCACTGACAGCACATG
CTACCCTATTGTGATTAAAATGTGGTTTGTGTCCACATCCCTGGGAGTCAGCTGGAGGCC
AGCCCTGGCTGGGCCCGAAGGCTGACTCTGGCCTGCCAGCAGTGCAGGCAGGAATCTCCC
AGGTGGCCTGGGGCTGCCCCCCAACCCTACCCCTTACCCTCACCCCCGAAGCTCTGGCCT
TCTGGTCAGACTGAAGGCAGCTCGTCTGGCCTCATCCAAATCTCTAAAAAGATGTTGAAC
CAATCTACTTTCTAGAACCCCTAGGAGGGAGCTTAGGGAACACTTATTTTAGCAGCATAC
CCCGAAATTAAGGGTTGACATTAAGTGATGGCTTGGGGGAAGGGGGAGCTAGTTAGGCAA
TCTGAGCTGAAGGCAGGCTTGAGGCCCAGGTGGGCTGCTAAGGCATCCGTGGGAGGCAGC
CAGGTTTTAGTGCAGGGGAGGAAATGCTTCTGGTCCCCACCTGGGGACCAGCAGAGGCCC
AGTGGGCTGGGGTGCCCAGGACCAGGGTGTGGGTGGAAGGAGGGACAGGGGTTCTAAAGG
TGCCAACTGGAAGGCAGAGAGAAAGGGTGCTTTCGAATGAAGGGTGCCCGGAAAACAGGG
AAGATGTAGGCCGTCTGCTCCAGTGCCCTCGCGATTCAGAACCTCAGGCGTTCTACCTCT
CCTTTCTGCAGCCGGCAGCCTACACCTGAGGCTGGCTGTCCTTCACCCGAGGGACCGAGG
AGCTCCTGGGACTGGTGTTTGCAGTCCCCGTGAGTGTGACTCTGACTTGCCTGCCAGACC
CGCCTTGAACTTCTGACCGTGCCAGGGCAGTTTCGGTTTTGAGAAGACGAAGCGTCACTT
TCTCCTTAGTTTCACTCCTGGAGGGTCTTCATCCCACGCCACCTGTGCCACTTGCATCAG
GCCCATCGACACAGCGGCAGTGCGGGCGAGGGTCACGGGCACGGTGGGGGTCTCTGGGGA
AAAGAGAAAGTGCCTGCAGAACTGGTGAACCATACATAATAGCTCTCACTGTTCTTATTT
CTCAATAGCTACTTTTTTTAGCTTAGACACCAGAGCCACACACTCCAATGGCTTAGTTAA
GTTATGACCTCTCATGGAATTCTTTCTGAATAGCCCGACTGTTGCATCCCAGTTTTCTGA
CTCGTCAATCAAGTTAACCTTTCATCACCGCAGAAGCAACAGGAGGGGGGTGGGGAGGGA
ACTCGACACTGAGCCACTAAAATACGGACTAATTTTTCAGACACATCTTCAAATGGACTG
TGCTACTGTTTTTGCCTCAAAGCTACCAAGTTTGTGCAATAAGTGGAAGGGATGTCATCC
CTGTTCAATAAAGGCTGAATGACATTCAAGGTGATTTTCTAGACCACTGAGAAAATCTTT
ATTTACAATAAATTTCAATAAAATTTGCATAAATATAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               199-383, - strand, RNAz p=0.997369
               

               
               1476-1595, - strand, RNAz p=0.732717

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-383, - strand, RNAz p=0.997369
               

               
               1476-1595, - strand, RNAz p=0.732717

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015914, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015914, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               123-1597, gnl|bosTau2|chr25 (9662486-9663992)
               

               
               123-1597, gnl|Hg17|chr16 (11679013-11680502)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-1597, gnl|bosTau2|chr25 (9662486-9663992)
               

               
               123-1597, gnl|Hg17|chr16 (11679013-11680502)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ece (0.687916)
               

               
               fcc (0.39557)
               

               
               sto (0.359648)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               fcc (0.39557)
               

               
               sto (0.359648)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	199-383, - strand, RNAz p=0.997369
	1476-1595, - strand, RNAz p=0.732717

	123-1597, gnl\|bosTau2\|chr25 (9662486-9663992)
	123-1597, gnl\|Hg17\|chr16 (11679013-11680502)

	ece (0.687916)
	fcc (0.39557)
	sto (0.359648)
	ecc (0.345105)
	csp (0.322373)
	cbe (0.239234)
	nlu (0.191681)
	fty (0.17584)
	nje (0.16592)
	lun (0.150489)
	fat (0.147427)
	pty (0.142714)
	ute (0.132784)
	med (0.116252)
	cty (0.10408)