Non-Coding RNA Search

Ss1.1-Pig4-TMW8060C21.3

Sequence:


               
               GACTCACATGAAGAGAAGCAGTTTGGGGGAAAGATTTTTGAATGGTTTTCTTTAAAGATG
TAATGTCCCTTTCAGTGAGAACCGATACTTCATTTAAAAAATCCAAATTTGAACACTGGC
TGCAAATCATTGCTATTTATTTTTGCATGAAGCTTTTTCTTATTTGGGAGTTCTGATGAT
TCCGTTATGTGGCAGCAAATTTTTTTTTTAAAATAACAACATCCTCAGCCCCCCTCCCTC
TGTCTCCCTTAAAATTGGAATGTACCAGTTAAACTATTCATCAGTTTGGTAATCACTCCA
GGTAACTGGGCAAAAATCTGGCATGTATGGGGGGGAGTTTGAATGCTCAGAATTGACCAT
CTAGTTTTTATCAGATTTGTTGAGAAAATTTTTAATTTTCTTTTCACTTCAGGGTGTGTA
GACACAGTCAAAATAATTCTAAATCCTTGGATATTTTTAAAGATCTGTAAGTAACTCGAC
ATAAAAAATAATGAAATAATTTTTAATTTAAAGACTCATTCTATTTGTTTATTTGCCCAA
AGGAAAGTGGTGTTTTTAAAGGAAAGTGCGTATAGAGAAAAGCACCCCGGGGGATGAGTG
AAATGGATACTACATCTTTAAACAGTATTTTTACATTGCCTGTGTATGTGTATGAAACAA
AACCATTTGAAGTGTACCTGTGTACATAACTCTGTAAAGACACTGAAAATTATACTAACT
TATTTATGTTAAAAAGAGATTTTTTTTTTAATCTAGACAATATACAAGCCAAAGTGGCAT
GTTTGTGCATTTGTAAATGCTGTATTGGGTAGAGTAGGTTTTTTCCCCTCTTCTGTTAAA
TAATATGGCTTAAAAGGTTGCATACTGAGCCAAGTATAATTTTTTTTGTAATGTGTGAAA
AAAATGCCAATTATTGTTAAACATCAAGCAATCAATAAAGAAAACTTCCATAGCTAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCACATGAAGAGAAGCAGTTTGGGGGAAAGATTTTTGAATGGTTTTCTTTAAAGATG
TAATGTCCCTTTCAGTGAGAACCGATACTTCATTTAAAAAATCCAAATTTGAACACTGGC
TGCAAATCATTGCTATTTATTTTTGCATGAAGCTTTTTCTTATTTGGGAGTTCTGATGAT
TCCGTTATGTGGCAGCAAATTTTTTTTTTAAAATAACAACATCCTCAGCCCCCCTCCCTC
TGTCTCCCTTAAAATTGGAATGTACCAGTTAAACTATTCATCAGTTTGGTAATCACTCCA
GGTAACTGGGCAAAAATCTGGCATGTATGGGGGGGAGTTTGAATGCTCAGAATTGACCAT
CTAGTTTTTATCAGATTTGTTGAGAAAATTTTTAATTTTCTTTTCACTTCAGGGTGTGTA
GACACAGTCAAAATAATTCTAAATCCTTGGATATTTTTAAAGATCTGTAAGTAACTCGAC
ATAAAAAATAATGAAATAATTTTTAATTTAAAGACTCATTCTATTTGTTTATTTGCCCAA
AGGAAAGTGGTGTTTTTAAAGGAAAGTGCGTATAGAGAAAAGCACCCCGGGGGATGAGTG
AAATGGATACTACATCTTTAAACAGTATTTTTACATTGCCTGTGTATGTGTATGAAACAA
AACCATTTGAAGTGTACCTGTGTACATAACTCTGTAAAGACACTGAAAATTATACTAACT
TATTTATGTTAAAAAGAGATTTTTTTTTTAATCTAGACAATATACAAGCCAAAGTGGCAT
GTTTGTGCATTTGTAAATGCTGTATTGGGTAGAGTAGGTTTTTTCCCCTCTTCTGTTAAA
TAATATGGCTTAAAAGGTTGCATACTGAGCCAAGTATAATTTTTTTTGTAATGTGTGAAA
AAAATGCCAATTATTGTTAAACATCAAGCAATCAATAAAGAAAACTTCCATAGCTAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               277-391, + strand, RNAz p=0.932647
               

               
               706-956, - strand, RNAz p=0.983751

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-391, + strand, RNAz p=0.932647
               

               
               706-956, - strand, RNAz p=0.983751

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004064, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004064, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-956, gnl|bosTau2|chr5 (57815532-57814557)
               

               
               1-956, gnl|Hg17|chr12 (12765610-12766570)
               

               
               1-956, gnl|Mm7|chr6 (134938931-134939835)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-956, gnl|bosTau2|chr5 (57815532-57814557)
               

               
               1-956, gnl|Hg17|chr12 (12765610-12766570)
               

               
               1-956, gnl|Mm7|chr6 (134938931-134939835)

Expressed library(ies): 35 entry(ies)

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Expressed library(ies): 35 entry(ies)

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               pro (1.02407)
               

               
               fco (0.943248)
               

               
               bfe (0.749288)
               

               
               thg (0.633955)
               

               
               sme (0.610874)
               

               
               gul (0.532765)
               

               
               sug (0.509165)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               fco (0.943248)
               

               
               bfe (0.749288)
               

               
               thg (0.633955)
               

               
               sme (0.610874)
               

               
               gul (0.532765)
               

               
               sug (0.509165)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	277-391, + strand, RNAz p=0.932647
	706-956, - strand, RNAz p=0.983751

	1-956, gnl\|bosTau2\|chr5 (57815532-57814557)
	1-956, gnl\|Hg17\|chr12 (12765610-12766570)
	1-956, gnl\|Mm7\|chr6 (134938931-134939835)

	pro (1.02407)
	fco (0.943248)
	bfe (0.749288)
	thg (0.633955)
	sme (0.610874)
	gul (0.532765)
	sug (0.509165)
	mgp (0.461361)
	spc (0.453463)
	lin (0.436808)
	aor (0.390549)
	ret (0.3862)
	vin (0.332557)
	mga (0.32041)
	isp (0.300752)
	fat (0.294855)
	ldo (0.291008)
	spl (0.286369)
	bla (0.248694)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	sag (0.182715)
	ton (0.1755)
	rec (0.17307)
	eye (0.170503)
	cag (0.151194)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	ste (0.135208)
	ova (0.129132)
	tra (0.123092)
	nbm (0.0993246)
	jej (0.0989218)