Non-Coding RNA Search

Ss1.1-Pig4-TMW8060C22.3

Sequence:


               
               GACAACTTCTCGGCCTACGGCTGGTGCCCCCTGGGACCACGTTGTCCTCGGTCCCATGAT
ATTGACCTTATTATTGACACTGACGAGGCTGTCGTGGAAGACAAGAGGCGTCGACGAAGA
CGTAGGGGAAAACGGCTGAAGGCTTTGTTGAGCCTGCCTGCGAGACAGACCCCTGGGGAA
ACGGAGGGTGGTCCTCCCGCCAAGCAGGTCTGTGGGGAAGGCCTGAAGCCTGAGGAAGGT
GAGCCGGAGGTGGCTGAGGATGAGACTGGGAACCAGCCTGGCTCTGAGCAAGGTCACGAA
AACGACTTGGACATGGAGCTTGAGGCAACAAGGCCTGCACCAGCTGACGTGACCGCCCCA
GAAGCACCAGGGAGTCAAGCCAGTCCTAACCCAGTGCCTGGGGATGGGCTGCATCGGGCT
GGCTTTGATGCCTTCATGACAGGCTACGTGATGGCCTATGTGGGAGTGGGCCAAGGACTC
CAGCCCTGTCGCTCTGGACCATGGCTACCTGAATGCCACAACAAGGTATACCTGAGTGGC
AAGGCTGTCCCCCTCACCGTGGCGAAAAGCCAGTTCTCCCGTTCCTCAAAAGCCCACAAC
CAGAAGATGAAGCTGGCGTGGGGCAGTGGCTGACCCAACTTCTACACAGCACTCAGGGCC
CGGGAACAAAGCTGAGGGTGAAACAGAAGGGTCTGGATCTCTCTCAGCCGTGAGTGCCTG
GCAGACGCTGCCGCGTCACTCCTCGTCCTCTCTCTTTACACCGGAGGTTGGGGAATAAGG
GGCACACACAAGAAGGCTGACCAGCACCTGTAACACCGACTTTATTTATTTTTAAATCTC
AAAGTGTCTTGGGAAAGTTTTACAAAAAAGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAACTTCTCGGCCTACGGCTGGTGCCCCCTGGGACCACGTTGTCCTCGGTCCCATGAT
ATTGACCTTATTATTGACACTGACGAGGCTGTCGTGGAAGACAAGAGGCGTCGACGAAGA
CGTAGGGGAAAACGGCTGAAGGCTTTGTTGAGCCTGCCTGCGAGACAGACCCCTGGGGAA
ACGGAGGGTGGTCCTCCCGCCAAGCAGGTCTGTGGGGAAGGCCTGAAGCCTGAGGAAGGT
GAGCCGGAGGTGGCTGAGGATGAGACTGGGAACCAGCCTGGCTCTGAGCAAGGTCACGAA
AACGACTTGGACATGGAGCTTGAGGCAACAAGGCCTGCACCAGCTGACGTGACCGCCCCA
GAAGCACCAGGGAGTCAAGCCAGTCCTAACCCAGTGCCTGGGGATGGGCTGCATCGGGCT
GGCTTTGATGCCTTCATGACAGGCTACGTGATGGCCTATGTGGGAGTGGGCCAAGGACTC
CAGCCCTGTCGCTCTGGACCATGGCTACCTGAATGCCACAACAAGGTATACCTGAGTGGC
AAGGCTGTCCCCCTCACCGTGGCGAAAAGCCAGTTCTCCCGTTCCTCAAAAGCCCACAAC
CAGAAGATGAAGCTGGCGTGGGGCAGTGGCTGACCCAACTTCTACACAGCACTCAGGGCC
CGGGAACAAAGCTGAGGGTGAAACAGAAGGGTCTGGATCTCTCTCAGCCGTGAGTGCCTG
GCAGACGCTGCCGCGTCACTCCTCGTCCTCTCTCTTTACACCGGAGGTTGGGGAATAAGG
GGCACACACAAGAAGGCTGACCAGCACCTGTAACACCGACTTTATTTATTTTTAAATCTC
AAAGTGTCTTGGGAAAGTTTTACAAAAAAGAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               124-243, + strand, RNAz p=0.908734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-243, + strand, RNAz p=0.908734

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-382, gnl|bosTau2|chr3 (70445341-70444964)
               

               
               5-382, gnl|Hg17|chr1 (45477839-45478183)
               

               
               5-382, gnl|Mm7|chr4 (116181502-116181167)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-382, gnl|bosTau2|chr3 (70445341-70444964)
               

               
               5-382, gnl|Hg17|chr1 (45477839-45478183)
               

               
               5-382, gnl|Mm7|chr4 (116181502-116181167)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	5-382, gnl\|bosTau2\|chr3 (70445341-70444964)
	5-382, gnl\|Hg17\|chr1 (45477839-45478183)
	5-382, gnl\|Mm7\|chr4 (116181502-116181167)