Ss1.1-Pig4-TMW8060C23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAAGCTGGGCCACTGGCTGGCCGTGAGGATTGGAAATGAATTGGAAAAAGGCTTAATT CCCAACAAAAGCAGAGCAGAGCAGATGGCCAGCGTTCAGACTGCCCAAAGAGACAGCGCT GGAGACAGGGCTGATTTCTGGAGGATGCGTGGCCAGAGATCAGGTGTGAAAAAGAATCTA CGGAAGAGTCGAGAAGACCTGACAGCCGTGGTGTCCATCAGCACCAAGTTCCCGGCTTAT GAGAGGGTTTTGCTTCGAGAAGCTGGTTTCAAGAGACCTGTGGTCTTATTCGGACCCATA GCAGACATAGCAATGGAGAAGTTGGCAAATGAGTTGCCTGACTTGTTCCAAACTGCTAAA ACAGAACCAAGAGACGCAGGATCCGAGAAATCTACTGGGGTGGTACGGTTGAATACCGTG AGGCAAATTATTGAACAGGACAAGCATGCACTCTTGGATGTGACTCCCAAAGCCGTGGAC CTCTTGAATTATACTCAGTGGTTCCCAATTGTGATTTTTTTCAACCCAGACTCTAGACAA GGCGTCAAAACCATGAGACAGAGGTTGAACCCATCATCCAACAAAAGTTCTCGGAAGTTA TTTGATCAAGCCAATAAACTTAAAAAAACTTGTGCGCATCTTTTCACAGCTACGATCAAC CTCAATTCAGCCAATGACAGCTGGTTTGGCAGCTTGAAGGACACAATTCAGCATCAGCAA GGGGAAGCAGTTTGGGTCTCTGAAGGAAAGATGGAAGGGATGGATGATGACCCCGAAGAC CGCATGTCCTACTTAACCGCCATGGGCGCAGACTATCTGAGTTGCGACAGCCGCCTCATC AGTGACTTTGAAGACACCGACGGCGAAGGAGGCGCCTACACTGACAATGAGCTGGATGAG CCAGCCGAGGAGCCACTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCATGAG GAGAGCATAAGGAAACCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGA GATCAACTTAGGGACAATAGCCCGCCCCCGGCATTCAAGCCAGAGCCGCCCAAGGCCAAA ACCGCAAACAGAGAAGACTCCTTTGACCTCTCCAGATCCTACGAATACAAATCAAATCCC TCAGCCGTTGCCAGTAATGAAATTCCGGGGACATCCACCAAAGGTTGTCCTCCTCCCATT GCAGCGAAACCCTCCTTTGGACGGCCTATACTGAAGCCCTCCACTCCCGTCCCTCCCCCA GAGAGTGACGAGGTGGGAGAGGGCAGTGAGGAGCAAGATGGCGCTCCCAAGTCTGTCCTG GGCAAAGTAAAAATATTTGAGAAGATGGATCACAAGGCAAGATTACAGAGGATGCAAGAG CTCCAGGAAGCACAGAATGCAAGGATTGAAATTGCTCAGAAACATCCTGATATCTATGCA GTTCCAATCAAAACACACAAGCCAGACTCTGGCCTGCCCCAATATATAAGTTCCAGGCCC CCCGAGCCACAGAGAGGTCCCGCCAGACTTTATCAGGATCCCAGAGGAAGCTATGGCAGT GATGCCGAAGAGGAAGAATACCGGCAGCAGCTGTCAGAACACTCAAAACGTGGTTATTAT GGCCAGCCTTCGCGCTACCGGGACACGGAATTATAGATGTCTGAGGATTGACTCCCCACT GCGGCCACTTAGAGCAGCACTCGCACCGGTGATGGGAGGATGGTTTTTTTCCAGTTTCAG TGCACTGTGGAGGTCTGCTGGGGAGCCCAGGGGCTGGGTCTGGGGAGTTGATGACTTTTT GCTCAGAATTAAGAGAAACACTACAGTCTGATACGGTTACCTGCTTCAGTGGACCAAAAT CTGTATTAATTCTGTTTGCATATTTTTGACATGTATATTAAGAAACGATAACTATTTTTC CTCATTAATAACTGCCTTCCAGGACTGTTTCAATAAAAGAATGAAGAAAAAAAAAAAAAG GAATAAAAATACTGTTGGACTCAAACTAAATTCAAAGTATTTTATTACAGCTCTATAAGT GCCTTTGATGAGAAGTGTCTTAAATTTTCTTCCTTTGAGGCTCTCCACAAAGCCATAATG GACTAAAACACTTTGACTAAATTTTTATACCAGTTTAATAACTACGGTTTTCTCTGTACT GTGTCATCTTTTCAAGGCATTTGTCTTCGTAATATTTTCCATAAATTCTGACTGTATATA TAAGAGCTATCTACCAGTGCTAAACAGCCCGAAGATCAAGAAGTGGGTATAGAAATATTT TGTCTGTCTGTTTGAAACCATGCACTGCACGAAAGCAGATACTCAAGAAAAACACATTTC CCGAGTGTGTATTGACATTAGTCAGTTTTATAATTTAATAAAAAGGAGGATATTGCAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAAGCTGGGCCACTGGCTGGCCGTGAGGATTGGAAATGAATTGGAAAAAGGCTTAATT CCCAACAAAAGCAGAGCAGAGCAGATGGCCAGCGTTCAGACTGCCCAAAGAGACAGCGCT GGAGACAGGGCTGATTTCTGGAGGATGCGTGGCCAGAGATCAGGTGTGAAAAAGAATCTA CGGAAGAGTCGAGAAGACCTGACAGCCGTGGTGTCCATCAGCACCAAGTTCCCGGCTTAT GAGAGGGTTTTGCTTCGAGAAGCTGGTTTCAAGAGACCTGTGGTCTTATTCGGACCCATA GCAGACATAGCAATGGAGAAGTTGGCAAATGAGTTGCCTGACTTGTTCCAAACTGCTAAA ACAGAACCAAGAGACGCAGGATCCGAGAAATCTACTGGGGTGGTACGGTTGAATACCGTG AGGCAAATTATTGAACAGGACAAGCATGCACTCTTGGATGTGACTCCCAAAGCCGTGGAC CTCTTGAATTATACTCAGTGGTTCCCAATTGTGATTTTTTTCAACCCAGACTCTAGACAA GGCGTCAAAACCATGAGACAGAGGTTGAACCCATCATCCAACAAAAGTTCTCGGAAGTTA TTTGATCAAGCCAATAAACTTAAAAAAACTTGTGCGCATCTTTTCACAGCTACGATCAAC CTCAATTCAGCCAATGACAGCTGGTTTGGCAGCTTGAAGGACACAATTCAGCATCAGCAA GGGGAAGCAGTTTGGGTCTCTGAAGGAAAGATGGAAGGGATGGATGATGACCCCGAAGAC CGCATGTCCTACTTAACCGCCATGGGCGCAGACTATCTGAGTTGCGACAGCCGCCTCATC AGTGACTTTGAAGACACCGACGGCGAAGGAGGCGCCTACACTGACAATGAGCTGGATGAG CCAGCCGAGGAGCCACTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCATGAG GAGAGCATAAGGAAACCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGA GATCAACTTAGGGACAATAGCCCGCCCCCGGCATTCAAGCCAGAGCCGCCCAAGGCCAAA ACCGCAAACAGAGAAGACTCCTTTGACCTCTCCAGATCCTACGAATACAAATCAAATCCC TCAGCCGTTGCCAGTAATGAAATTCCGGGGACATCCACCAAAGGTTGTCCTCCTCCCATT GCAGCGAAACCCTCCTTTGGACGGCCTATACTGAAGCCCTCCACTCCCGTCCCTCCCCCA GAGAGTGACGAGGTGGGAGAGGGCAGTGAGGAGCAAGATGGCGCTCCCAAGTCTGTCCTG GGCAAAGTAAAAATATTTGAGAAGATGGATCACAAGGCAAGATTACAGAGGATGCAAGAG CTCCAGGAAGCACAGAATGCAAGGATTGAAATTGCTCAGAAACATCCTGATATCTATGCA GTTCCAATCAAAACACACAAGCCAGACTCTGGCCTGCCCCAATATATAAGTTCCAGGCCC CCCGAGCCACAGAGAGGTCCCGCCAGACTTTATCAGGATCCCAGAGGAAGCTATGGCAGT GATGCCGAAGAGGAAGAATACCGGCAGCAGCTGTCAGAACACTCAAAACGTGGTTATTAT GGCCAGCCTTCGCGCTACCGGGACACGGAATTATAGATGTCTGAGGATTGACTCCCCACT GCGGCCACTTAGAGCAGCACTCGCACCGGTGATGGGAGGATGGTTTTTTTCCAGTTTCAG TGCACTGTGGAGGTCTGCTGGGGAGCCCAGGGGCTGGGTCTGGGGAGTTGATGACTTTTT GCTCAGAATTAAGAGAAACACTACAGTCTGATACGGTTACCTGCTTCAGTGGACCAAAAT CTGTATTAATTCTGTTTGCATATTTTTGACATGTATATTAAGAAACGATAACTATTTTTC CTCATTAATAACTGCCTTCCAGGACTGTTTCAATAAAAGAATGAAGAAAAAAAAAAAAAG GAATAAAAATACTGTTGGACTCAAACTAAATTCAAAGTATTTTATTACAGCTCTATAAGT GCCTTTGATGAGAAGTGTCTTAAATTTTCTTCCTTTGAGGCTCTCCACAAAGCCATAATG GACTAAAACACTTTGACTAAATTTTTATACCAGTTTAATAACTACGGTTTTCTCTGTACT GTGTCATCTTTTCAAGGCATTTGTCTTCGTAATATTTTCCATAAATTCTGACTGTATATA TAAGAGCTATCTACCAGTGCTAAACAGCCCGAAGATCAAGAAGTGGGTATAGAAATATTT TGTCTGTCTGTTTGAAACCATGCACTGCACGAAAGCAGATACTCAAGAAAAACACATTTC CCGAGTGTGTATTGACATTAGTCAGTTTTATAATTTAATAAAAAGGAGGATATTGCAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 846-1404, - strand, RNAz p=0.992618 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 846-1404, - strand, RNAz p=0.992618 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 73-267, gnl|bosTau2|chr21 (3112-3303) | |
| 73-267, gnl|Hg17|chr15 (27812313-27812122) | |
| 73-267, gnl|Mm7|chr7 (61180647-61180456) | |
| 434-652, gnl|bosTau2|chr8 (19675403-19675185) | |
| 434-652, gnl|canFam2|chr1 (91206350-91206072) | |
| 434-652, gnl|danRer3|chr10 (645449-645685) | |
| 434-652, gnl|dasNov1|scaffold_6386 (35325-35048) | |
| 434-652, gnl|echTel1|scaffold_265723 (17884-17626) | |
| 434-652, gnl|fr1|chrUn (135795755-135795504) | |
| 434-652, gnl|galGal2|chrZ (15507730-15508007) | |
| 434-652, gnl|hg17|chr9 (69084354-69084632) | |
| 434-652, gnl|Hg17|chr9 (69084402-69084620) | |
| 434-652, gnl|loxAfr1|scaffold_5473 (28367-28121) | |
| 434-652, gnl|mm7|chr19 (23807037-23806756) | |
| 434-652, gnl|Mm7|chr19 (23806987-23806769) | |
| 434-652, gnl|monDom2|scaffold_17 (20848646-20848363) | |
| 434-652, gnl|oryCun1|scaffold_127481 (54215-53938) | |
| 434-652, gnl|panTro1|chr11 (52861408-52861685) | |
| 434-652, gnl|rheMac2|chr15 (78048760-78049037) | |
| 434-652, gnl|rn3|chr1 (227652389-227652110) | |
| 434-652, gnl|tetNig1|chrUn_random (92105818-92105572) | |
| 434-652, gnl|xenTro1|scaffold_535 (538433-538707) | |
| 436-648, gnl|bosTau2|chr21 (6444-6656) | |
| 436-648, gnl|canFam2|chr3 (41875977-41876245) | |
| 436-648, gnl|danRer3|chrUn (80457478-80457235) | |
| 436-648, gnl|dasNov1|scaffold_6386 (35057-35301) | |
| 436-648, gnl|echTel1|scaffold_265723 (17632-17877) | |
| 436-648, gnl|fr1|chrUn (231063558-231063265) | |
| 436-648, gnl|galGal2|chr10 (6819775-6820021) | |
| 436-648, gnl|hg17|chr15 (27806272-27806555) | |
| 436-648, gnl|Hg17|chr15 (27806490-27806278) | |
| 436-648, gnl|loxAfr1|scaffold_5473 (28127-28375) | |
| 436-648, gnl|mm7|chr7 (61176326-61176572) | |
| 436-648, gnl|Mm7|chr7 (61176544-61176332) | |
| 436-648, gnl|monDom2|scaffold_12 (58181514-58181773) | |
| 436-648, gnl|oryCun1|scaffold_210495 (39699-39980) | |
| 436-648, gnl|panTro1|chr16 (19232799-19232516) | |
| 436-648, gnl|rheMac2|chr7 (8813609-8813892) | |
| 436-648, gnl|rn3|chr1 (119786455-119786721) | |
| 436-648, gnl|tetNig1|chr13 (12182900-12182663) | |
| 436-648, gnl|xenTro1|scaffold_676 (50310-50549) | |
| 749-963, gnl|bosTau2|chr8 (19666730-19666516) | |
| 749-963, gnl|Hg17|chr9 (69092480-69092694) | |
| 749-963, gnl|Mm7|chr19 (23799043-23798829) | |
| 1073-1404, gnl|bosTau2|chr8 (19663973-19663642) | |
| 1073-1404, gnl|Hg17|chr9 (69095503-69095834) | |
| 1073-1404, gnl|Mm7|chr19 (23796444-23796128) | |
| 1489-2400, gnl|bosTau2|chr8 (19660672-19659743) | |
| 1489-2400, gnl|Hg17|chr9 (69098677-69099669) | |
| 1489-2400, gnl|Mm7|chr19 (23793719-23792782) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-267, gnl|bosTau2|chr21 (3112-3303) | |
| 73-267, gnl|Hg17|chr15 (27812313-27812122) | |
| 73-267, gnl|Mm7|chr7 (61180647-61180456) | |
| 434-652, gnl|bosTau2|chr8 (19675403-19675185) | |
| 434-652, gnl|canFam2|chr1 (91206350-91206072) | |
| 434-652, gnl|danRer3|chr10 (645449-645685) | |
| 434-652, gnl|dasNov1|scaffold_6386 (35325-35048) | |
| 434-652, gnl|echTel1|scaffold_265723 (17884-17626) | |
| 434-652, gnl|fr1|chrUn (135795755-135795504) | |
| 434-652, gnl|galGal2|chrZ (15507730-15508007) | |
| 434-652, gnl|hg17|chr9 (69084354-69084632) | |
| 434-652, gnl|Hg17|chr9 (69084402-69084620) | |
| 434-652, gnl|loxAfr1|scaffold_5473 (28367-28121) | |
| 434-652, gnl|mm7|chr19 (23807037-23806756) | |
| 434-652, gnl|Mm7|chr19 (23806987-23806769) | |
| 434-652, gnl|monDom2|scaffold_17 (20848646-20848363) | |
| 434-652, gnl|oryCun1|scaffold_127481 (54215-53938) | |
| 434-652, gnl|panTro1|chr11 (52861408-52861685) | |
| 434-652, gnl|rheMac2|chr15 (78048760-78049037) | |
| 434-652, gnl|rn3|chr1 (227652389-227652110) | |
| 434-652, gnl|tetNig1|chrUn_random (92105818-92105572) | |
| 434-652, gnl|xenTro1|scaffold_535 (538433-538707) | |
| 436-648, gnl|bosTau2|chr21 (6444-6656) | |
| 436-648, gnl|canFam2|chr3 (41875977-41876245) | |
| 436-648, gnl|danRer3|chrUn (80457478-80457235) | |
| 436-648, gnl|dasNov1|scaffold_6386 (35057-35301) | |
| 436-648, gnl|echTel1|scaffold_265723 (17632-17877) | |
| 436-648, gnl|fr1|chrUn (231063558-231063265) | |
| 436-648, gnl|galGal2|chr10 (6819775-6820021) | |
| 436-648, gnl|hg17|chr15 (27806272-27806555) | |
| 436-648, gnl|Hg17|chr15 (27806490-27806278) | |
| 436-648, gnl|loxAfr1|scaffold_5473 (28127-28375) | |
| 436-648, gnl|mm7|chr7 (61176326-61176572) | |
| 436-648, gnl|Mm7|chr7 (61176544-61176332) | |
| 436-648, gnl|monDom2|scaffold_12 (58181514-58181773) | |
| 436-648, gnl|oryCun1|scaffold_210495 (39699-39980) | |
| 436-648, gnl|panTro1|chr16 (19232799-19232516) | |
| 436-648, gnl|rheMac2|chr7 (8813609-8813892) | |
| 436-648, gnl|rn3|chr1 (119786455-119786721) | |
| 436-648, gnl|tetNig1|chr13 (12182900-12182663) | |
| 436-648, gnl|xenTro1|scaffold_676 (50310-50549) | |
| 749-963, gnl|bosTau2|chr8 (19666730-19666516) | |
| 749-963, gnl|Hg17|chr9 (69092480-69092694) | |
| 749-963, gnl|Mm7|chr19 (23799043-23798829) | |
| 1073-1404, gnl|bosTau2|chr8 (19663973-19663642) | |
| 1073-1404, gnl|Hg17|chr9 (69095503-69095834) | |
| 1073-1404, gnl|Mm7|chr19 (23796444-23796128) | |
| 1489-2400, gnl|bosTau2|chr8 (19660672-19659743) | |
| 1489-2400, gnl|Hg17|chr9 (69098677-69099669) | |
| 1489-2400, gnl|Mm7|chr19 (23793719-23792782) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| aor (0.390549) | |
| kid (0.389206) | |
| tra (0.369276) | |
| mgm (0.360685) | |
| jca (0.22792) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| aor (0.390549) | |
| kid (0.389206) | |
| tra (0.369276) | |
| mgm (0.360685) | |
| jca (0.22792) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |