Non-Coding RNA Search

Ss1.1-Pig4-TMW8060D01.5

Sequence:


               
               GAGCTGATACAATAGCTGGGGATCCCATGTGTTCCTTTAACATGACTCCAGTGGGAATTG
GCAAGTGTCTTAAGTACATCCTTCAGTGGCAATTGGCAACACTCATTTTGGGAGGAGGAG
GCTATAACCTTGCCAACACGGCTCGATGCTGGACATACTTGACCGGGGTCATCCTAGGGA
AAACACTATCCTCTGAGATCCCAGATCATGAGTTTTTCACAGCATATGGTCCTGATTATG
TGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAGTCCAGCAAA
TCCTCAACTACATCAAAGGGAATCTGAAGCATGTGGTCTAGCTGACAAAAAGAGATCAGG
TTTCCAGAGCTGAGGAGCAGTGCCTGTAATGAAGACAGCGTGTTTATGCGAGCAGTGTGT
GGAATTTGTGACTGCAGGGGAAATTTGGAAGAAATTACTTCCTGAAAATTTCCAAGGGGC
ACCAAGTGGCAGCTGGCCTCCTGGGGTGAGGTGGGCTGGCACCCCAGAGGCCTCAACTAG
ACCTAGGGGGAGATAAAGATTTCCAACATTTAAAGTGTTTATTTTTAAAAAACACACAAA
TGCCATTTTTAATCTTTGAAAATTATTTTTCAGCAAGTTGGGGAGGGGTATTTTTATTTT
CTTAAAGGAGACAGATCAGAAACTGGAGGAAAATGTGGAGACTTAGCTGCCAGCTTATGG
GGTGAAGGGGGGAGCTAAGAAGCAGGGATTGGGCCTCAGAACCATCCAAGTGAAGCCTTG
CCAGAGAAGGACCGGTCAGCATACTGGGAGGTGGAGAGAAATCCACCTGTGTTTTTAGGA
TTATGGATCTATTTTGTTTTTTTAATAAAATCTTTGAAAACCTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGATACAATAGCTGGGGATCCCATGTGTTCCTTTAACATGACTCCAGTGGGAATTG
GCAAGTGTCTTAAGTACATCCTTCAGTGGCAATTGGCAACACTCATTTTGGGAGGAGGAG
GCTATAACCTTGCCAACACGGCTCGATGCTGGACATACTTGACCGGGGTCATCCTAGGGA
AAACACTATCCTCTGAGATCCCAGATCATGAGTTTTTCACAGCATATGGTCCTGATTATG
TGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAGTCCAGCAAA
TCCTCAACTACATCAAAGGGAATCTGAAGCATGTGGTCTAGCTGACAAAAAGAGATCAGG
TTTCCAGAGCTGAGGAGCAGTGCCTGTAATGAAGACAGCGTGTTTATGCGAGCAGTGTGT
GGAATTTGTGACTGCAGGGGAAATTTGGAAGAAATTACTTCCTGAAAATTTCCAAGGGGC
ACCAAGTGGCAGCTGGCCTCCTGGGGTGAGGTGGGCTGGCACCCCAGAGGCCTCAACTAG
ACCTAGGGGGAGATAAAGATTTCCAACATTTAAAGTGTTTATTTTTAAAAAACACACAAA
TGCCATTTTTAATCTTTGAAAATTATTTTTCAGCAAGTTGGGGAGGGGTATTTTTATTTT
CTTAAAGGAGACAGATCAGAAACTGGAGGAAAATGTGGAGACTTAGCTGCCAGCTTATGG
GGTGAAGGGGGGAGCTAAGAAGCAGGGATTGGGCCTCAGAACCATCCAAGTGAAGCCTTG
CCAGAGAAGGACCGGTCAGCATACTGGGAGGTGGAGAGAAATCCACCTGTGTTTTTAGGA
TTATGGATCTATTTTGTTTTTTTAATAAAATCTTTGAAAACCTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-555, + strand, RNAz p=0.979919

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-555, + strand, RNAz p=0.979919

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018486, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018486, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               317-884, gnl|bosTau2|chrX (23826507-23825948)
               

               
               317-884, gnl|Hg17|chrX (71332949-71332387)
               

               
               317-884, gnl|Mm7|chrX (97612525-97611993)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               317-884, gnl|bosTau2|chrX (23826507-23825948)
               

               
               317-884, gnl|Hg17|chrX (71332949-71332387)
               

               
               317-884, gnl|Mm7|chrX (97612525-97611993)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               pgl (0.236967)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               pgl (0.236967)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	317-884, gnl\|bosTau2\|chrX (23826507-23825948)
	317-884, gnl\|Hg17\|chrX (71332949-71332387)
	317-884, gnl\|Mm7\|chrX (97612525-97611993)