Ss1.1-Pig4-TMW8060D05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAGGTGCAGGCCGTTGGGGCGTCTTGGAAGCAGGTGACTATGAAAGGCTTATATTTT CAACGGAGTTCTACAAGTGAAGAACTAACATTTGTCTTCCAAGAAAGGGAAAATCTTCCT GTTACAGAGGATAACTATGTGAAACTTCAAGTTAAAGCTTGTGCTCTGAGCCAGATAAAT ACAAAGCTCCTGGCAGAAATGAAGATGGAGAAGGATTTCTTTCCTGTTGGGAGAGAAGTT GCTGGAGTTGTGCTAGATGTTGGAAGCAAGGTATCATTCTTCGAACCAGATGATGAAGTA GTTGGAATTTTACCCCTGGATTCTGAAGACCCTGGACTTTGTGAAGTTGTTCGAGTCCAC GAGCATTACTTGGTTCACAAACCAGAAAAAGTTACGTGGACAGAAGCTGCTGGAACCATT CGGGATGGAGTACGAGCCTACACAGCTCTGCATTACCTTTCTCATCTCTCTCCTGGAAAA TCAGTGCTGATCATGGATGGAGCAAGTGCTCTCGGTACGATAGCTATTCAGTTAGCACAC CACAGAGGAGCCAAAGTGCTTTCAACAGTGTGCAGTCTTGAAGACAAGCAGTGTCTTGAA AGATTTAAGCCTCCCATAGCCCGCGTGATCGACGTATCCAATGGGAAAGCCCATGTTGCC GAAAGCTGTTTAGAAGAAACAGGTGGCCTCGGAGTAGATATTGTCCTAGATGCTGGAGTG AGATTATATAGTAAAGATGATGAACCAGCTGTAAAATTACAACTGCTGCCACATAAACAT GATATCATCACCCTTCTTGGTGTTGGAGGCCACTGGGTAACAACAGAAGAAAACCTGCAG CTGGATCCTCCAGATAGCCATTGCCTTTTCCTCAAGGGAGCGACAGTGGCTTTCCTTAAT GATGAAGTTTGGAATTTGTCAAATGTACAACAGGGAAAGTATCTTTGTATCTTAAAAGAT GTGATGGAGAAGTTATCAACTGGTGTTTTTAGACCTCAATTGGATGAACCTATTCCACTA TACGAGGCAAAAGTTACCATGGAAGTTGTTCAGAAAAATCAACGAAGAAAGAAGCAAGTT GTTCAATTTTAATTTTGTTCTTTCTCAGACCTCAGTTGGATGAGCCTATTCCAGTATTTG AAGCCTGAGTTGCCTTGGAAATTGGGAAAAGTTAAGGAAGATAAAAGCAAGTTTTTACAT TTTTTAAGCATATTTCCTGCTGAGACAAGATGCTCAGGGTTATTTGAAGTATTTGAGAAG TACTTGAAAAAATACTCAAGACAATTCTAAAATTAGCATCTAAAGGGAATATTCTAAAAG GCTTTTTAGTTATTGTTTCTATATATTTGCCTCTTCTAAAATTCTTTCCATGATGAAAAC TGCTTTAAGCAGAAGCCATGCTACTATCTATAAAGCTGTTGGAATCTCCTGCTGTATCAA AATAACATTACTTTTGTATTACACTCTCTTCTCAATACCTTCCTTCTTTAACAAGCCTTT GCTGTCCTAACCTAATCATTTGAATATATCTTCAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAGGTGCAGGCCGTTGGGGCGTCTTGGAAGCAGGTGACTATGAAAGGCTTATATTTT CAACGGAGTTCTACAAGTGAAGAACTAACATTTGTCTTCCAAGAAAGGGAAAATCTTCCT GTTACAGAGGATAACTATGTGAAACTTCAAGTTAAAGCTTGTGCTCTGAGCCAGATAAAT ACAAAGCTCCTGGCAGAAATGAAGATGGAGAAGGATTTCTTTCCTGTTGGGAGAGAAGTT GCTGGAGTTGTGCTAGATGTTGGAAGCAAGGTATCATTCTTCGAACCAGATGATGAAGTA GTTGGAATTTTACCCCTGGATTCTGAAGACCCTGGACTTTGTGAAGTTGTTCGAGTCCAC GAGCATTACTTGGTTCACAAACCAGAAAAAGTTACGTGGACAGAAGCTGCTGGAACCATT CGGGATGGAGTACGAGCCTACACAGCTCTGCATTACCTTTCTCATCTCTCTCCTGGAAAA TCAGTGCTGATCATGGATGGAGCAAGTGCTCTCGGTACGATAGCTATTCAGTTAGCACAC CACAGAGGAGCCAAAGTGCTTTCAACAGTGTGCAGTCTTGAAGACAAGCAGTGTCTTGAA AGATTTAAGCCTCCCATAGCCCGCGTGATCGACGTATCCAATGGGAAAGCCCATGTTGCC GAAAGCTGTTTAGAAGAAACAGGTGGCCTCGGAGTAGATATTGTCCTAGATGCTGGAGTG AGATTATATAGTAAAGATGATGAACCAGCTGTAAAATTACAACTGCTGCCACATAAACAT GATATCATCACCCTTCTTGGTGTTGGAGGCCACTGGGTAACAACAGAAGAAAACCTGCAG CTGGATCCTCCAGATAGCCATTGCCTTTTCCTCAAGGGAGCGACAGTGGCTTTCCTTAAT GATGAAGTTTGGAATTTGTCAAATGTACAACAGGGAAAGTATCTTTGTATCTTAAAAGAT GTGATGGAGAAGTTATCAACTGGTGTTTTTAGACCTCAATTGGATGAACCTATTCCACTA TACGAGGCAAAAGTTACCATGGAAGTTGTTCAGAAAAATCAACGAAGAAAGAAGCAAGTT GTTCAATTTTAATTTTGTTCTTTCTCAGACCTCAGTTGGATGAGCCTATTCCAGTATTTG AAGCCTGAGTTGCCTTGGAAATTGGGAAAAGTTAAGGAAGATAAAAGCAAGTTTTTACAT TTTTTAAGCATATTTCCTGCTGAGACAAGATGCTCAGGGTTATTTGAAGTATTTGAGAAG TACTTGAAAAAATACTCAAGACAATTCTAAAATTAGCATCTAAAGGGAATATTCTAAAAG GCTTTTTAGTTATTGTTTCTATATATTTGCCTCTTCTAAAATTCTTTCCATGATGAAAAC TGCTTTAAGCAGAAGCCATGCTACTATCTATAAAGCTGTTGGAATCTCCTGCTGTATCAA AATAACATTACTTTTGTATTACACTCTCTTCTCAATACCTTCCTTCTTTAACAAGCCTTT GCTGTCCTAACCTAATCATTTGAATATATCTTCAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 373-508, gnl|bosTau2|chr1 (1343250-1343115) | |
| 373-508, gnl|Hg17|chr21 (33897714-33897579) | |
| 373-508, gnl|Mm7|chr16 (91751552-91751417) | |
| 717-840, gnl|bosTau2|chr1 (1337869-1337746) | |
| 717-840, gnl|canFam2|chr31 (31232275-31232357) | |
| 717-840, gnl|danRer3|chr1 (47527243-47527165) | |
| 717-840, gnl|dasNov1|scaffold_58725 (8682-8600) | |
| 717-840, gnl|echTel1|scaffold_319055 (85702-85784) | |
| 717-840, gnl|galGal2|chr1 (99172104-99172186) | |
| 717-840, gnl|hg17|chr21 (33891454-33891536) | |
| 717-840, gnl|Hg17|chr21 (33891579-33891456) | |
| 717-840, gnl|loxAfr1|scaffold_810 (23433-23354) | |
| 717-840, gnl|mm7|chr16 (91744526-91744605) | |
| 717-840, gnl|Mm7|chr16 (91744648-91744528) | |
| 717-840, gnl|monDom2|scaffold_29 (14150043-14149961) | |
| 717-840, gnl|oryCun1|scaffold_105004 (4635-4714) | |
| 717-840, gnl|panTro1|chr22 (33879705-33879787) | |
| 717-840, gnl|rheMac2|chr3 (12964760-12964678) | |
| 717-840, gnl|rn3|chr11 (31705521-31705600) | |
| 717-840, gnl|tetNig1|chr17 (8612821-8612740) | |
| 717-840, gnl|xenTro1|scaffold_497 (874353-874435) | |
| 991-1536, gnl|bosTau2|chr1 (1333641-1333094) | |
| 991-1536, gnl|Hg17|chr21 (33884099-33883548) | |
| 991-1536, gnl|Mm7|chr16 (91740263-91739716) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 373-508, gnl|bosTau2|chr1 (1343250-1343115) | |
| 373-508, gnl|Hg17|chr21 (33897714-33897579) | |
| 373-508, gnl|Mm7|chr16 (91751552-91751417) | |
| 717-840, gnl|bosTau2|chr1 (1337869-1337746) | |
| 717-840, gnl|canFam2|chr31 (31232275-31232357) | |
| 717-840, gnl|danRer3|chr1 (47527243-47527165) | |
| 717-840, gnl|dasNov1|scaffold_58725 (8682-8600) | |
| 717-840, gnl|echTel1|scaffold_319055 (85702-85784) | |
| 717-840, gnl|galGal2|chr1 (99172104-99172186) | |
| 717-840, gnl|hg17|chr21 (33891454-33891536) | |
| 717-840, gnl|Hg17|chr21 (33891579-33891456) | |
| 717-840, gnl|loxAfr1|scaffold_810 (23433-23354) | |
| 717-840, gnl|mm7|chr16 (91744526-91744605) | |
| 717-840, gnl|Mm7|chr16 (91744648-91744528) | |
| 717-840, gnl|monDom2|scaffold_29 (14150043-14149961) | |
| 717-840, gnl|oryCun1|scaffold_105004 (4635-4714) | |
| 717-840, gnl|panTro1|chr22 (33879705-33879787) | |
| 717-840, gnl|rheMac2|chr3 (12964760-12964678) | |
| 717-840, gnl|rn3|chr11 (31705521-31705600) | |
| 717-840, gnl|tetNig1|chr17 (8612821-8612740) | |
| 717-840, gnl|xenTro1|scaffold_497 (874353-874435) | |
| 991-1536, gnl|bosTau2|chr1 (1333641-1333094) | |
| 991-1536, gnl|Hg17|chr21 (33884099-33883548) | |
| 991-1536, gnl|Mm7|chr16 (91740263-91739716) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| fce (0.543183) | |
| ece (0.45861) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| med (0.232504) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| ece (0.45861) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| med (0.232504) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| spc (0.113366) | |
| eje (0.0988338) |