Non-Coding RNA Search

Ss1.1-Pig4-TMW8060D09.3

Sequence:


               
               TTTTTTAAAGAAAATATAATCAGTGCAAGAGTTAAGAAGGTAAGGAAAGAAGTTTGGAAA
TGCAATTCTTTTGCTCTAGAAAAGCAAAAGAAATTTTCTACTAATACTGGCAAGAAGCAA
TGCGTGCGTATATTCCAGGAAAAATAATGGATGATACTCATGTTTTCATTGCCATCCATG
AAGATAGTAGTGTTTTACTGATGTACTGCAAAGAACAATCTTATAGAGAATTCTTACATC
AAAGGAACTTTTTTGACCTCTGTACTCTGGAAATACTAACGAACAAAGCAAAGCACCACA
AACAGAGAACCAGCTTTTCTTAATCATAATCTGTTATCTCAACCAGAATTCAAATCATGA
TTTTTTACCTCAAGCCAGAATTCAAAGTTGGGCCTGACAAGCATGTACTAAGGAGAGCCT
TATTGTATATCAGCCAACTGTTGTCTGGAATCGCCTGTGTTCAGAAAATCTCATTTAAGG
ACATTGTCATTAAAATGATGATCACCATGAAATACATGAGCATCGTGTCAAGGACCAGAA
TGAAAGCTACAGTTATTACTGAGGGACAGTATAAAAGGTGTTTTCAGATACCACTTCTGA
ACCGATGAAGTATTGGGCTTATTTGAAGGTCTAGGAGATGCCAGGTCCATGTTGGTTTTG
ACTTTAAATTCAGAGACTGAAGAAGTAAACCATTTTTTGAAGAAAGTTGATTGGATGTTG
ACTTTTATATTAATAATGTCATTATTTTATTCAGTGATCCACTATATTAGTTTGGATCTT
ATATTTATTCTTTAGAGAAATGCTCAACTTATTCAGATCTGACTGGAAGCTTGTATTTGG
ATATTTGTTAAACTTAAATTTTTATGTCTTAAAAAAAATCTCATTCTTCAGCCTCAAAGA
AAGAGCTATCACTATTTCACTTGAAAATATTATCTACTTTAAAAATTTTGCACCATTACT
AGTTTTCTGCAACATGAATTTCAGTAATTGTACAGTGTCATCTTTGAAAACCAGTCATCT
CCTGTACAGCTTTGATTCTAGGATTTTAGAGTTGCCATTATTACAAAACAAGTAAATTGA
AGATCTAAAGTGTGTAAAATTATTTTCGGTATAGTTGAGGTAAGATGATCACTAGGTCAG
AAGATCTGTGCTGTGTCAACAAACTGTGTCTAAATTTTTTTGCATTTCTCTTTTCTTTTG
CTTCAGAGGAGTCCCAGGAAGGTGAGAAACCTACAAAGTCTCAAATTCTTGTAGTCTTAA
ACTCTTTAACTTCAGGGCACTCTGAGTCATTCTCCTAACGAATCACTCCATGTTTTAGGT
GTTTTCCAAACTGTTTGAAGTTACTAGACGTCGAATGGTTCATCGTGCTCTTTCATCAGC
ACAGCGACAGAGACTGTCATCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTAAAGAAAATATAATCAGTGCAAGAGTTAAGAAGGTAAGGAAAGAAGTTTGGAAA
TGCAATTCTTTTGCTCTAGAAAAGCAAAAGAAATTTTCTACTAATACTGGCAAGAAGCAA
TGCGTGCGTATATTCCAGGAAAAATAATGGATGATACTCATGTTTTCATTGCCATCCATG
AAGATAGTAGTGTTTTACTGATGTACTGCAAAGAACAATCTTATAGAGAATTCTTACATC
AAAGGAACTTTTTTGACCTCTGTACTCTGGAAATACTAACGAACAAAGCAAAGCACCACA
AACAGAGAACCAGCTTTTCTTAATCATAATCTGTTATCTCAACCAGAATTCAAATCATGA
TTTTTTACCTCAAGCCAGAATTCAAAGTTGGGCCTGACAAGCATGTACTAAGGAGAGCCT
TATTGTATATCAGCCAACTGTTGTCTGGAATCGCCTGTGTTCAGAAAATCTCATTTAAGG
ACATTGTCATTAAAATGATGATCACCATGAAATACATGAGCATCGTGTCAAGGACCAGAA
TGAAAGCTACAGTTATTACTGAGGGACAGTATAAAAGGTGTTTTCAGATACCACTTCTGA
ACCGATGAAGTATTGGGCTTATTTGAAGGTCTAGGAGATGCCAGGTCCATGTTGGTTTTG
ACTTTAAATTCAGAGACTGAAGAAGTAAACCATTTTTTGAAGAAAGTTGATTGGATGTTG
ACTTTTATATTAATAATGTCATTATTTTATTCAGTGATCCACTATATTAGTTTGGATCTT
ATATTTATTCTTTAGAGAAATGCTCAACTTATTCAGATCTGACTGGAAGCTTGTATTTGG
ATATTTGTTAAACTTAAATTTTTATGTCTTAAAAAAAATCTCATTCTTCAGCCTCAAAGA
AAGAGCTATCACTATTTCACTTGAAAATATTATCTACTTTAAAAATTTTGCACCATTACT
AGTTTTCTGCAACATGAATTTCAGTAATTGTACAGTGTCATCTTTGAAAACCAGTCATCT
CCTGTACAGCTTTGATTCTAGGATTTTAGAGTTGCCATTATTACAAAACAAGTAAATTGA
AGATCTAAAGTGTGTAAAATTATTTTCGGTATAGTTGAGGTAAGATGATCACTAGGTCAG
AAGATCTGTGCTGTGTCAACAAACTGTGTCTAAATTTTTTTGCATTTCTCTTTTCTTTTG
CTTCAGAGGAGTCCCAGGAAGGTGAGAAACCTACAAAGTCTCAAATTCTTGTAGTCTTAA
ACTCTTTAACTTCAGGGCACTCTGAGTCATTCTCCTAACGAATCACTCCATGTTTTAGGT
GTTTTCCAAACTGTTTGAAGTTACTAGACGTCGAATGGTTCATCGTGCTCTTTCATCAGC
ACAGCGACAGAGACTGTCATCCAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               90-888, gnl|bosTau2|chr11 (16438340-16439088)
               

               
               90-888, gnl|Hg17|chr2 (38436565-38435833)
               

               
               90-888, gnl|Mm7|chr17 (78147882-78146960)
               


               
               896-1404, gnl|bosTau2|chr11 (16439144-16439653)
               

               
               896-1404, gnl|Hg17|chr2 (38435780-38435298)
               

               
               896-1404, gnl|Mm7|chr17 (78146916-78146421)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-888, gnl|bosTau2|chr11 (16438340-16439088)
               

               
               90-888, gnl|Hg17|chr2 (38436565-38435833)
               

               
               90-888, gnl|Mm7|chr17 (78147882-78146960)
               


               
               896-1404, gnl|bosTau2|chr11 (16439144-16439653)
               

               
               896-1404, gnl|Hg17|chr2 (38435780-38435298)
               

               
               896-1404, gnl|Mm7|chr17 (78146916-78146421)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               liv (0.146284)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               kid (0.129735)

	90-888, gnl\|bosTau2\|chr11 (16438340-16439088)
	90-888, gnl\|Hg17\|chr2 (38436565-38435833)
	90-888, gnl\|Mm7\|chr17 (78147882-78146960)

	896-1404, gnl\|bosTau2\|chr11 (16439144-16439653)
	896-1404, gnl\|Hg17\|chr2 (38435780-38435298)
	896-1404, gnl\|Mm7\|chr17 (78146916-78146421)